View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19520_high_32 (Length: 416)
Name: NF19520_high_32
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_high_32 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 104 - 181
Target Start/End: Original strand, 11625620 - 11625697
Alignment:
| Q |
104 |
ttaatcaactctgtttcggaagtaagtaagaaaattgaactagaaccagaaagcacgatcctaaattttttgaatcag |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11625620 |
ttaatcaactctgtttcggaagtaagtaagaaaattgaactagaactagaaagcacgatcctaaattttttgaatcag |
11625697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 359
Target Start/End: Original strand, 11625834 - 11625877
Alignment:
| Q |
316 |
ccaatccattacctcatgctcaaatttatttaattttgacatct |
359 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11625834 |
ccaatccattacctcatggtcaaatttatttaattttgacatct |
11625877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 84
Target Start/End: Original strand, 11625572 - 11625601
Alignment:
| Q |
55 |
ctttatttcgagtccttaccaacttcatgt |
84 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
11625572 |
ctttatttcgagtccttaccaacttcatgt |
11625601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University