View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_high_41 (Length: 397)
Name: NF19520_high_41
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_high_41 |
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| [»] scaffold0727 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 387
Target Start/End: Original strand, 47900666 - 47901034
Alignment:
| Q |
19 |
ggacacacctaacggtcaaacaaacctcgttcccgccaccaccggaacaaggtttctccggcagagagaggtgnnnnnnntgattggtgtggaagtgttg |
118 |
Q |
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| T |
47900666 |
ggacacacctaacggtcaaacaaacctcgttcccgccaccaccggaacaaggtttctccggcagagagaggtgaaaaaaatgattggtgtggaagtgttg |
47900765 |
T |
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| Q |
119 |
tcgaaatacgaggaagaattagagagaagaagttaacaagaacaacgtttgttttaatgttgtggtgatgctggaataatgctatggaatttttgttgaa |
218 |
Q |
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| T |
47900766 |
tcgaaatacgaggaagaattagagagaagaagttagcaagaacaacgtttgttttaatgttgtggtgatgctggaattatgctatggaatttttgttgaa |
47900865 |
T |
|
| Q |
219 |
gcttagttggattttgaaccgttagattgttacttgtgatggaatgttctaaacggaagattcgaatctttgcgttgttgttattttgtttgaaaattga |
318 |
Q |
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| T |
47900866 |
gcttagttggattttgaaccgttagattgttacttgtgatggaatgttctaaacggaagattcgaatctttgcgttgttgttattttgtttgaaaattga |
47900965 |
T |
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| Q |
319 |
aagtgttagttgctttgctgagttgtttaatcattcgtggggttccagttttgctgttgtgtccctttg |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47900966 |
aagtgttagttgctttgctgagttgtttaatcattcgtggggttccagttttgctgttgtgtccttttg |
47901034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 23554474 - 23554415
Alignment:
| Q |
19 |
ggacacacctaacggtcaaacaaacctcgttcccgccaccaccggaacaaggtttctccg |
78 |
Q |
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| T |
23554474 |
ggacacacctaacagtcaaacaaaccttgttgccgccaccatcggaacaagatttctccg |
23554415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0727 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0727
Description:
Target: scaffold0727; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 6595 - 6536
Alignment:
| Q |
19 |
ggacacacctaacggtcaaacaaacctcgttcccgccaccaccggaacaaggtttctccg |
78 |
Q |
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||||||||||||| ||||||||||||| ||| ||||||||| ||||||||| |||||||| |
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| T |
6595 |
ggacacacctaacagtcaaacaaaccttgttgccgccaccatcggaacaagatttctccg |
6536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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