View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_high_43 (Length: 386)
Name: NF19520_high_43
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_high_43 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 371
Target Start/End: Complemental strand, 43666433 - 43666078
Alignment:
| Q |
19 |
atttacctcatccgtaattatccaatctctctccaaaactcacatcactcatagattcttccattacat-----gcaacaactctctccctccatttcat |
113 |
Q |
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| T |
43666433 |
atttacctcatccgtaattatccaatctctctctaaaactcacatcactcatagattcttccattacattacatgcaacaactctc--cctccattccat |
43666336 |
T |
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| Q |
114 |
tataaataacttccatcacaacacaatctaaaacgcaaac------acaaacacacactcgttgtgtcatcactatggagcctctctcttccactaaaca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
43666335 |
tataaataacttccatcacaacacaatctaaaacgcaaactcaaacacaaacacacactcattgtgtcatcactatggagcctttctcttccactaaaca |
43666236 |
T |
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| Q |
208 |
aaatcatnnnnnnnnnnnnnnnnnnnctctaactaaaccttctcttcatgttgaatctccaccacttgaaccaagtcctctccgtaagatcatagtcgtt |
307 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43666235 |
aaatcataacaacaacaaca------ctctaactaaaccttctcttcatgttgaatctccaccacttgaacctagtcctctccgtaagatcatagtcgtt |
43666142 |
T |
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| Q |
308 |
gcttccatagcagcaggtgttcagtttggctgggccctacagctttcacttttaactccctatg |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43666141 |
gcttccatagcagcaggtgttcagtttggctgggccctacagctttcacttttaactccctatg |
43666078 |
T |
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