View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_high_45 (Length: 377)
Name: NF19520_high_45
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_high_45 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 361
Target Start/End: Complemental strand, 19887680 - 19887338
Alignment:
| Q |
19 |
gaaagccctgcttgaactcggtgctgcggatgttaactacccggctggacctgccgggaaaacttcccttcatgtggctgccgaaatggtgtcgccggag |
118 |
Q |
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| T |
19887680 |
gaaagccctgcttgaactcggggctgcggatgttaactacccggctggacctgccgggaaaacttcccttcatgtggctgccgagatggtgtcgccggag |
19887581 |
T |
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| Q |
119 |
atggtggcagttttgcttgaccaccatgcagatcctacagttagaaccgttgacggtgtcacacctttggatatacttagaaccctaacctctgattttc |
218 |
Q |
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| T |
19887580 |
atggtggcagttttgcttgaccaccatgcagatcccacagttagaaccgttgacggtgtcacacctttggatatacttagaaccctaacctctgattttc |
19887481 |
T |
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| Q |
219 |
tcttcaaaggtgctgttcctggattaaaccacattgaaccaaacaagttaagattgtgtttggaacttgttcaatctgcagctcttgttctgtcacgtga |
318 |
Q |
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| T |
19887480 |
tcttcaaaggtgctgttcctggattaaaccacattgaaccaaacaagttaagattgtgtttggaacttgttcaatctgcagctcttgttctgtcacgtga |
19887381 |
T |
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| Q |
319 |
agaaaacaatgctagtaacaataataacaacaacaacaatgct |
361 |
Q |
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| T |
19887380 |
agaaaacaatgctagtaacaataataacaacaacaacaatgct |
19887338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 32 - 312
Target Start/End: Original strand, 35319470 - 35319750
Alignment:
| Q |
32 |
gaactcggtgctgcggatgttaactacccggctggacctgccgggaaaacttcccttcatgtggctgccgaaatggtgtcgccggagatggtggcagttt |
131 |
Q |
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||||||||||| || |||||||||| ||||||||| || |||| ||||| | ||||| | || || || ||||| || ||||| |||||||| |||| |
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| T |
35319470 |
gaactcggtgcagccgatgttaacttcccggctggtccaaccggtaaaaccccgcttcacattgcagcggagatggtctcaccggatatggtggctgttt |
35319569 |
T |
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| Q |
132 |
tgcttgaccaccatgcagatcctacagttagaaccgttgacggtgtcacacctttggatatacttagaaccctaacctctgattttctcttcaaaggtgc |
231 |
Q |
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|||| |||||||| || || || | || ||||| ||||| ||||| ||||| ||||| || || ||||||||||| || |||||||| ||||||||||| |
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| T |
35319570 |
tgctcgaccaccacgctgacccaaatgtgagaacagttgatggtgttacaccattggacattctaagaaccctaacttcggattttctattcaaaggtgc |
35319669 |
T |
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| Q |
232 |
tgttcctggattaaaccacattgaaccaaacaagttaagattgtgtttggaacttgttcaatctgcagctcttgttctgtc |
312 |
Q |
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||| |||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
35319670 |
tgtccctggattaactcacattgaaccaaacaaactaaggttgtgtttggaacttgttcaatctgcagctcttgttatgtc |
35319750 |
T |
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