View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_high_47 (Length: 374)
Name: NF19520_high_47
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_high_47 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 363
Target Start/End: Complemental strand, 18647466 - 18647123
Alignment:
| Q |
16 |
aaaaatacaggtggaatgccattagtgcgaaattggtcaacaggatcttcattaaggtcaggctcaacaagattgaaaccagcattcaacaagaattttg |
115 |
Q |
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| T |
18647466 |
aaaaatacaggtggaatgccattagtgcgaaattggtcaacaggatcttcattaaggtcaggctcaacaagattgaaaccagcattcaacaagaattttg |
18647367 |
T |
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| Q |
116 |
ttgagttattactactcttggtgaatatgccatgaaaattgagtggtgttggagaagagaaggattttgaagtgagttttgatggagtgatgataggagg |
215 |
Q |
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| T |
18647366 |
ttgagttattattactcttggtgaatatgccatgaaagttgagtggtgttggtgaagagaaggattttgaagtgagttttgatggagtgatgataggagg |
18647267 |
T |
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| Q |
216 |
gacaagtgaaagtgaggaacatagcgccatgtgtcagacttggttggttggttctctttcatatgttatctccacttttatcacccagcaactannnnnn |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
18647266 |
gacaagtgaaagtgaggaacatagcgccatgtgtcagacttggttggttggttctctttcatatgttatctccacttttatca-acagcaactatttttt |
18647168 |
T |
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| Q |
316 |
ngagaggattcacctaataaattttatctacttagattattagatatt |
363 |
Q |
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||||| ||||| || |||||||||||||||||||||||||||||| |
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| T |
18647167 |
t--gaggaatcacc-aacaaattttatctacttagattattagatatt |
18647123 |
T |
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