View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_high_50 (Length: 352)
Name: NF19520_high_50
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_high_50 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 41945749 - 41946084
Alignment:
| Q |
1 |
aagaaattatatagaaaaaa-tcctgaattttgtggttgaactttcctaggaactttgtccttggaagcacatattttcaaaaaattaaatttcttaaaa |
99 |
Q |
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| T |
41945749 |
aagaaattatatagaaaaaaatcatgaattttgtggttgaactttcctaggaactttgtccttggaagcacatattttcaaaaaattaaatttcttaaaa |
41945848 |
T |
|
| Q |
100 |
gttttcctcttgttggtttgattccaactccaagaccacgatataccctaatctttttctacaattgattgaaaagcttcattaagagccatttgccata |
199 |
Q |
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| T |
41945849 |
gttttcctcttgttggtttgattccaactccaagaccacgatataccctaatctttttctacaattgattgaaaagcttcattaagagccatttgccata |
41945948 |
T |
|
| Q |
200 |
actatagaaaattgtgctcttt-cccaacatcaggatctctctaagaatannnnnnnagatccacaaaacattacattaacactttttaaaactaaatat |
298 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41945949 |
actatagaaaattgtgctctttccccaacatcaggatctctctaagaatatttttttagatccacaaaacattacattaacactttttaaaactaaatat |
41946048 |
T |
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| Q |
299 |
ttcaatatattatcacgtcttaactaatgacatgaa |
334 |
Q |
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||||||||||||||||||||||||||| |||||||| |
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| T |
41946049 |
ttcaatatattatcacgtcttaactaacgacatgaa |
41946084 |
T |
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