View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_high_52 (Length: 330)
Name: NF19520_high_52
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_high_52 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 13 - 315
Target Start/End: Original strand, 52699653 - 52699955
Alignment:
| Q |
13 |
aaaatgctaggtaaattcgaaatcccaaatggatctgttaccgtgtttgctgccagcagcagtctcatacttatacccttatatgagagatttataatcc |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52699653 |
aaaaagctaggtaaattcgaaatcccaaatggatctgttaccgtgtttgctgccagcagcagtctcatacttatacccttatatgagagatttataatcc |
52699752 |
T |
|
| Q |
113 |
caattctccgaaaatttaccggccacagccgcggcatcacatccttacaacgaatgggagttggactttttgtctcaatcatcgctatggcttcagcagc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52699753 |
caattctccgaaaatttaccggccacagccgcggcatcacatccttacaacgaatgggagttggactttttgtctcaatcatcgctatggcttcagcagc |
52699852 |
T |
|
| Q |
213 |
attggttgaaaagacgagacgggaacactacccaggagagaacagcatgagtgtgttttggttgttacctcaattctttctaatgggtagtgctgaagtt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52699853 |
attggttgaaaagacgagacgggaacactacccaggagagaacagcatgagtgtgttttggttgttacctcaattctttctaatgggtagtgctgaagtt |
52699952 |
T |
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| Q |
313 |
ttt |
315 |
Q |
| |
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||| |
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| T |
52699953 |
ttt |
52699955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 28 - 315
Target Start/End: Original strand, 52722967 - 52723254
Alignment:
| Q |
28 |
ttcgaaatcccaaatggatctgttaccgtgtttgctgccagcagcagtctcatacttatacccttatatgagagatttataatcccaattctccgaaaat |
127 |
Q |
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||||||||||||| || ||||| | || |||||||||| || | | ||||||||| |||| | || |||||||| ||||||||| ||||||| |||| |
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| T |
52722967 |
ttcgaaatcccaacaggttctgtccctgtctttgctgccatcaacggcctcatacttgtacctctctacgagagattaataatcccatttctccgcaaat |
52723066 |
T |
|
| Q |
128 |
ttaccggccacagccgcggcatcacatccttacaacgaatgggagttggactttttgtctcaatcatcgctatggcttcagcagcattggttgaaaagac |
227 |
Q |
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|||| ||||| ||| ||||||||||| |||||||||||||| ||||| |||||| ||||||||||||||||||||||||| ||||| |||||||| | |
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| T |
52723067 |
ttacaggccatcaccgtggcatcacatcgttacaacgaatgggtgttgggctttttatctcaatcatcgctatggcttcagctgcattagttgaaaaaag |
52723166 |
T |
|
| Q |
228 |
gagacgggaacactacccaggagagaacagcatgagtgtgttttggttgttacctcaattctttctaatgggtagtgctgaagttttt |
315 |
Q |
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|||||| || |||||||| | || ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
52723167 |
gagacgcgatcactacccgcaaccaaatagcatgagtgtgttttggttgttacctcaattctttctaattggtactgctgaagttttt |
52723254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 28 - 315
Target Start/End: Original strand, 52713945 - 52714232
Alignment:
| Q |
28 |
ttcgaaatcccaaatggatctgttaccgtgtttgctgccagcagcagtctcatacttatacccttatatgagagatttataatcccaattctccgaaaat |
127 |
Q |
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||||||||||| | || ||||| |||| |||| ||||| || | | ||||||||| |||| || || |||||||| ||||||||| ||||||| || | |
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| T |
52713945 |
ttcgaaatcccgacaggttctgtccccgtctttggtgccatcaacggcctcatacttgtacctttctacgagagattcataatcccatttctccgtaagt |
52714044 |
T |
|
| Q |
128 |
ttaccggccacagccgcggcatcacatccttacaacgaatgggagttggactttttgtctcaatcatcgctatggcttcagcagcattggttgaaaagac |
227 |
Q |
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||||||||||| ||| ||||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||||||||||| ||||| |||||||| | |
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| T |
52714045 |
ttaccggccaccaccgtggcatcacatcgttacaacgaatgggtgttgggcttttcatctcaatcatcgctatggcttcagctgcattagttgaaaaaag |
52714144 |
T |
|
| Q |
228 |
gagacgggaacactacccaggagagaacagcatgagtgtgttttggttgttacctcaattctttctaatgggtagtgctgaagttttt |
315 |
Q |
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|||||| || ||| |||| | || ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
52714145 |
gagacgcgatcaccacccgcaaccaaatagcatgagtgtgttttggttgttacctcaattctttctaattggtactgctgaagttttt |
52714232 |
T |
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