View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19520_high_58 (Length: 295)

Name: NF19520_high_58
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19520_high_58
NF19520_high_58
[»] chr8 (3 HSPs)
chr8 (22-286)||(12833180-12833444)
chr8 (149-198)||(29342175-29342224)
chr8 (24-90)||(7918447-7918510)
[»] chr2 (3 HSPs)
chr2 (158-216)||(39567774-39567832)
chr2 (133-180)||(43965245-43965292)
chr2 (131-179)||(43808485-43808533)
[»] chr3 (2 HSPs)
chr3 (22-89)||(40665436-40665500)
chr3 (161-206)||(36587873-36587918)
[»] chr5 (7 HSPs)
chr5 (153-206)||(6938850-6938903)
chr5 (23-92)||(37611215-37611281)
chr5 (23-92)||(37787945-37788011)
chr5 (145-211)||(26516175-26516241)
chr5 (129-182)||(4991054-4991107)
chr5 (22-92)||(11457103-11457169)
chr5 (145-181)||(20982262-20982298)
[»] chr7 (2 HSPs)
chr7 (145-180)||(1431435-1431470)
chr7 (48-92)||(35267366-35267410)
[»] chr4 (3 HSPs)
chr4 (155-206)||(17823020-17823071)
chr4 (48-89)||(18628565-18628606)
chr4 (129-181)||(32920509-32920561)
[»] chr1 (2 HSPs)
chr1 (142-193)||(47885132-47885183)
chr1 (145-201)||(24263266-24263322)
[»] chr6 (2 HSPs)
chr6 (48-92)||(2205612-2205656)
chr6 (22-76)||(4420663-4420714)


Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 22 - 286
Target Start/End: Complemental strand, 12833444 - 12833180
Alignment:
Q  22 atgacatgttcataagctgtttacaacagcttatttctataagctctcctagataactaatgaaaacaattatacgtaaacaatttaacttaatttgatc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12833444 atgacatgttcataagctgtttacaacagcttatttctataagctctcctagataactaatgaaaacaattatacgtaaacaatttaacttaatttgatc 12833345  T
Q  122 ttgcatgataaaaattgctcattcataaacacttatatgataagcccttatgctataagctgtgaattaaactgtttatcaaaaccgggctttatatagc 221  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12833344 ttgcgtgataaaaattgctcattcataaacacttatatgataagcccttatgctataagctgtgaattaaactgtttatcaaaaccgggctttatatagc 12833245  T
Q  222 aaattctatcaaggtaagtactaacggttacaatcaatcactaactaacataacagaaagtataa 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12833244 aaattctatcaaggtaagtactaacggttacaatcaatcactaactaacataacagaaagtataa 12833180  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 29342224 - 29342175
Alignment:
Q  149 aacacttatatgataagcccttatgctataagctgtgaattaaactgttt 198  Q
    ||||||||||||||||| | ||||||||||||  || |||||||||||||    
T  29342224 aacacttatatgataagtcattatgctataagtagttaattaaactgttt 29342175  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 7918447 - 7918510
Alignment:
Q  24 gacatgttcataagctgtttacaacagcttatttctataagctctcctagataactaatgaaaacaa 90  Q
    |||||||||||||||||||| |||   |||||||| ||||||||||| ||||| || | ||||||||    
T  7918447 gacatgttcataagctgtttccaa---cttatttcaataagctctccaagatagcttacgaaaacaa 7918510  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 39567832 - 39567774
Alignment:
Q  158 atgataagcccttatgctataagctgtgaattaaactgtttatcaaaaccgggctttat 216  Q
    ||||||||| ||||||| |||||||||||||||| ||||||||| ||||||||| ||||    
T  39567832 atgataagcgcttatgcaataagctgtgaattaagctgtttatccaaaccgggccttat 39567774  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 43965245 - 43965292
Alignment:
Q  133 aaattgctcattcataaacacttatatgataagcccttatgctataag 180  Q
    |||| ||| ||||||||||||||||||||||||  |||||||||||||    
T  43965245 aaatagcttattcataaacacttatatgataagtgcttatgctataag 43965292  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 43808533 - 43808485
Alignment:
Q  131 aaaaattgctcattcataaacacttatatgataagcccttatgctataa 179  Q
    |||||| ||| || ||||||||||||||||||| || ||||||||||||    
T  43808533 aaaaatagcttatacataaacacttatatgatacgcgcttatgctataa 43808485  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 40665500 - 40665436
Alignment:
Q  22 atgacatgttcataagctgtttacaacagcttatttctataagctctcctagataactaatgaaaaca 89  Q
    |||||||||||||||||||||| ||   |||||||| |||||||||||| |||||||| |||||||||    
T  40665500 atgacatgttcataagctgttttca---gcttatttttataagctctccaagataacttatgaaaaca 40665436  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 36587918 - 36587873
Alignment:
Q  161 ataagcccttatgctataagctgtgaattaaactgtttatcaaaac 206  Q
    |||||| ||||||||||||||||| ||||||| |||||||| ||||    
T  36587918 ataagcgcttatgctataagctgtaaattaaattgtttatcgaaac 36587873  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 6938850 - 6938903
Alignment:
Q  153 cttatatgataagcccttatgctataagctgtgaattaaactgtttatcaaaac 206  Q
    ||||||||||||||  |||||||||||||||  |||||||||||||||| ||||    
T  6938850 cttatatgataagcgtttatgctataagctgataattaaactgtttatccaaac 6938903  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 37611215 - 37611281
Alignment:
Q  23 tgacatgttcataagctgtttacaacagcttatttctataagctctcctagataactaatgaaaacaatt 92  Q
    ||||||||||||||||||||| ||   | ||||||| ||||||||||| ||||| || ||||||||||||    
T  37611215 tgacatgttcataagctgttttca---ggttatttccataagctctccaagatagcttatgaaaacaatt 37611281  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 37787945 - 37788011
Alignment:
Q  23 tgacatgttcataagctgtttacaacagcttatttctataagctctcctagataactaatgaaaacaatt 92  Q
    ||||||||||||||||||||| ||   | ||||||| ||||||||||| ||||| || ||||||||||||    
T  37787945 tgacatgttcataagctgttttca---ggttatttccataagctctccaagatagcttatgaaaacaatt 37788011  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 26516241 - 26516175
Alignment:
Q  145 cataaacacttatatgataagcccttatgctataagctgtgaattaaactgtttatcaaaaccgggc 211  Q
    ||||| |||||||||||||||| ||||||||||||||  | ||||||  |||||||| |||| ||||    
T  26516241 cataagcacttatatgataagcgcttatgctataagcgcttaattaagttgtttatccaaactgggc 26516175  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 4991054 - 4991107
Alignment:
Q  129 ataaaaattgctcattcataaacacttatatgataagcccttatgctataagct 182  Q
    |||||||| ||| || || ||||||||||||||||| | |||||||||||||||    
T  4991054 ataaaaatagcttatacacaaacacttatatgataatcgcttatgctataagct 4991107  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 11457169 - 11457103
Alignment:
Q  22 atgacatgttcataagctgtttacaacagcttatttctataagctctcctagataactaatgaaaacaatt 92  Q
    ||||||||| ||||||||||||    ||  ||||||||||||||||||| ||||||||  |||||||||||    
T  11457169 atgacatgtccataagctgttt----catattatttctataagctctccaagataacttttgaaaacaatt 11457103  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 20982262 - 20982298
Alignment:
Q  145 cataaacacttatatgataagcccttatgctataagc 181  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  20982262 cataagcacttatatgataagcacttatgctataagc 20982298  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 180
Target Start/End: Original strand, 1431435 - 1431470
Alignment:
Q  145 cataaacacttatatgataagcccttatgctataag 180  Q
    |||||||||||||||||||||| |||||||||||||    
T  1431435 cataaacacttatatgataagcacttatgctataag 1431470  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 35267410 - 35267366
Alignment:
Q  48 cagcttatttctataagctctcctagataactaatgaaaacaatt 92  Q
    ||||||||||||||||||||||| |||||||| |  |||||||||    
T  35267410 cagcttatttctataagctctccaagataacttaaaaaaacaatt 35267366  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 17823071 - 17823020
Alignment:
Q  155 tatatgataagcccttatgctataagctgtgaattaaactgtttatcaaaac 206  Q
    ||||||||||||||||||||||| |||||  |||||| ||||||||| ||||    
T  17823071 tatatgataagcccttatgctatgagctgcaaattaagctgtttatccaaac 17823020  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 18628565 - 18628606
Alignment:
Q  48 cagcttatttctataagctctcctagataactaatgaaaaca 89  Q
    ||||||||||| ||||||||||| |||||||| |||||||||    
T  18628565 cagcttatttccataagctctccaagataacttatgaaaaca 18628606  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 32920509 - 32920561
Alignment:
Q  129 ataaaaattgctcattcataaacacttatatgataagcccttatgctataagc 181  Q
    |||||||| ||| || |||||||||||||||||||  |||| |||||||||||    
T  32920509 ataaaaatagcttatccataaacacttatatgatataccctgatgctataagc 32920561  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 47885132 - 47885183
Alignment:
Q  142 attcataaacacttatatgataagcccttatgctataagctgtgaattaaac 193  Q
    |||||||| || ||||||||||||| ||||||||||||||||  ||||||||    
T  47885132 attcataagcaattatatgataagcgcttatgctataagctgcaaattaaac 47885183  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 24263266 - 24263322
Alignment:
Q  145 cataaacacttatatgataagcccttatgctataagctgtgaattaaactgtttatc 201  Q
    |||||||||||||||| ||| |  |||||||||||||  | ||||||||||||||||    
T  24263266 cataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatc 24263322  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 2205612 - 2205656
Alignment:
Q  48 cagcttatttctataagctctcctagataactaatgaaaacaatt 92  Q
    ||||||||||| ||||||||||| ||||| || ||||||||||||    
T  2205612 cagcttatttccataagctctccaagatagcttatgaaaacaatt 2205656  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 4420714 - 4420663
Alignment:
Q  22 atgacatgttcataagctgtttacaacagcttatttctataagctctcctagata 76  Q
    ||||||||||||||||||||||    ||||||||||| ||||||||||| |||||    
T  4420714 atgacatgttcataagctgttt---tcagcttatttccataagctctccaagata 4420663  T

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