View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19520_high_7 (Length: 769)

Name: NF19520_high_7
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19520_high_7
NF19520_high_7
[»] chr4 (51 HSPs)
chr4 (93-750)||(50668544-50669202)
chr4 (459-661)||(50250804-50251006)
chr4 (459-647)||(37827022-37827210)
chr4 (408-722)||(7877534-7877847)
chr4 (471-729)||(48852534-48852792)
chr4 (603-729)||(7908325-7908445)
chr4 (408-563)||(7773938-7774093)
chr4 (459-561)||(48870401-48870503)
chr4 (459-561)||(48886087-48886189)
chr4 (208-277)||(7822585-7822654)
chr4 (208-272)||(7813096-7813160)
chr4 (184-300)||(45372427-45372543)
chr4 (184-300)||(48156797-48156913)
chr4 (459-563)||(48875705-48875809)
chr4 (208-572)||(7771020-7771379)
chr4 (208-266)||(7800253-7800311)
chr4 (171-572)||(7789668-7790064)
chr4 (173-329)||(48870123-48870279)
chr4 (173-329)||(48885809-48885965)
chr4 (211-307)||(49041501-49041597)
chr4 (466-565)||(48170690-48170789)
chr4 (206-272)||(45366619-45366685)
chr4 (595-665)||(48170581-48170651)
chr4 (225-307)||(48891042-48891124)
chr4 (171-277)||(50251201-50251307)
chr4 (590-635)||(7813464-7813509)
chr4 (590-635)||(7822953-7822998)
chr4 (601-640)||(7237767-7237806)
chr4 (601-640)||(7771396-7771435)
chr4 (601-640)||(7790081-7790120)
chr4 (225-307)||(47207567-47207649)
chr4 (163-272)||(7238118-7238227)
chr4 (184-277)||(7904624-7904717)
chr4 (600-657)||(48147744-48147801)
chr4 (601-662)||(48705381-48705442)
chr4 (232-305)||(48875486-48875559)
chr4 (504-572)||(7237823-7237891)
chr4 (225-305)||(7877353-7877433)
chr4 (408-572)||(7908142-7908306)
chr4 (184-272)||(48862833-48862921)
chr4 (601-656)||(7773845-7773900)
chr4 (208-307)||(7907941-7908040)
chr4 (229-276)||(45385181-45385228)
chr4 (151-266)||(48902509-48902624)
chr4 (514-561)||(49044310-49044357)
chr4 (687-729)||(48705332-48705374)
chr4 (13-86)||(49048505-49048579)
chr4 (233-287)||(50672161-50672215)
chr4 (598-631)||(7800629-7800662)
chr4 (514-559)||(33133930-33133975)
chr4 (208-273)||(48735712-48735777)
[»] chr7 (1 HSPs)
chr7 (459-658)||(48883657-48883856)
[»] chr8 (10 HSPs)
chr8 (459-653)||(12200163-12200357)
chr8 (459-653)||(12444591-12444785)
chr8 (208-335)||(15348478-15348605)
chr8 (603-665)||(12195300-12195362)
chr8 (603-665)||(12439728-12439790)
chr8 (459-564)||(12195156-12195261)
chr8 (459-564)||(12439584-12439689)
chr8 (225-260)||(4032326-4032361)
chr8 (184-277)||(12199899-12199992)
chr8 (184-277)||(12444327-12444420)
[»] chr3 (8 HSPs)
chr3 (417-564)||(47452018-47452165)
chr3 (596-659)||(11005978-11006041)
chr3 (596-659)||(11024553-11024616)
chr3 (171-277)||(11006355-11006461)
chr3 (184-306)||(11024901-11025023)
chr3 (409-533)||(11024673-11024797)
chr3 (440-550)||(11015644-11015754)
chr3 (184-277)||(47452300-47452393)
[»] chr6 (5 HSPs)
chr6 (231-302)||(21980012-21980083)
chr6 (466-560)||(21015672-21015766)
chr6 (595-640)||(21979682-21979727)
chr6 (20-86)||(21979564-21979631)
chr6 (457-572)||(21979753-21979868)
[»] chr5 (6 HSPs)
chr5 (455-550)||(29696067-29696162)
chr5 (184-269)||(29687643-29687728)
chr5 (188-307)||(1812021-1812140)
chr5 (225-272)||(42562729-42562776)
chr5 (600-658)||(29696203-29696261)
chr5 (20-68)||(179113-179162)
[»] chr1 (4 HSPs)
chr1 (600-659)||(24310168-24310227)
chr1 (464-550)||(24310047-24310133)
chr1 (206-272)||(24322076-24322142)
chr1 (600-659)||(24367144-24367203)


Alignment Details
Target: chr4 (Bit Score: 615; Significance: 0; HSPs: 51)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 93 - 750
Target Start/End: Original strand, 50668544 - 50669202
Alignment:
Q  93 tcggtgtgaccattttctattatccccttttccatacgtcattgtctcagagatggagatggagaagacaacactgtcgtatctgcattacgaattgatc 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||| ||| ||||||||||||||||||||||    
T  50668544 tcggtgtgaccattttctattatccccttttccatacgtcattgtctcagagatggagacggagaagatgacaatgtagtatctgcattacgaattgatc 50668643  T
Q  193 attcaaattttggtaaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatctccgatcacaattttgctaatt 292  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50668644 attcaaattttggtgaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatctccgatcacaattttgctaatt 50668743  T
Q  293 ctcattttgaacttagtgccgaatcacacactcgtagaattttatccatatcatcacattcacctcttgagtttcgatctatagattttgagtcatcatc 392  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50668744 ctcattttgaacttactgccgaatcacacactcgtagaattttatccatatcatcacattcacctcttgagtttcgatctatagattttgagtcatcatc 50668843  T
Q  393 gct-aacaatcattgggcttcactcaaccttaatttttcacttcctcgatcttattttactcctgatattagaggttcgtgtagaggctttatatttttg 491  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50668844 gcttaacaatcattgggcttcactcaaccttaatttttcacttcctcaatcttattttactcctgatattagaggttcgtgtagaggctttatatttttg 50668943  T
Q  492 cattgttcttccaacatctgcatatggaatccatccaccagatttcataaacaaataccattgtctccttttgataccaaactaaaggaatatcattttg 591  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  50668944 cattgttcttccaacatctgcatatggaatccatccaccagatttcataaacagataccattgtctccttttgataccaaactaaaggaatatcattttg 50669043  T
Q  592 atcatctatatggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcctatgatccaaccatggatgatatttcaccaaattttga 691  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50669044 atcatctatatggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcctatgatccaaccatggatgatatttcaccaaattttga 50669143  T
Q  692 gtttttctcagtgagagataatacatggaaacaaattgggatggaggatactcacttcg 750  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50669144 gtttttctcagtgagagataatacatggaaacaaattgggatggaggatactcacttcg 50669202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 459 - 661
Target Start/End: Complemental strand, 50251006 - 50250804
Alignment:
Q  459 attagaggttcgtgtagaggctttatatttttgcattgttcttccaacatctgcatatggaatccatccaccagatttcataaacaaataccattgtctc 558  Q
    |||| |||||| |||||||| ||||||||||| || |||| ||| | | ||| | ||||||||||||||||| |  |||| | ||||||||| |||||||    
T  50251006 attaaaggttcatgtagaggatttatatttttccactgtttttcaagcctctacctatggaatccatccaccgggcttcacatacaaatacctttgtctc 50250907  T
Q  559 cttttgataccaaactaaaggaatatcattttgatcatctatatggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcctatga 658  Q
     ||||||| ||||| ||||| |||||||||   |||||||||||||||||||||||||||  |||| ||||||||| ||||| |||||| | |||||| |    
T  50250906 attttgattccaaattaaagaaatatcattccaatcatctatatggttttggttatgaccactcaacagatgattatttggtggtttcaatatcctatca 50250807  T
Q  659 tcc 661  Q
    |||    
T  50250806 tcc 50250804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 459 - 647
Target Start/End: Complemental strand, 37827210 - 37827022
Alignment:
Q  459 attagaggttcgtgtagaggctttatatttttgcattgttcttccaacatctgcatatggaatccatccaccagatttcataaacaaataccattgtctc 558  Q
    |||| ||||||  ||||||| ||| ||||||||||  ||||||  ||||||| ||||||||||||||||||  ||||||| ||||||||||| |||||||    
T  37827210 attaaaggttcaggtagagggtttgtatttttgcaccgttctttaaacatctacatatggaatccatccactggatttcacaaacaaatacccttgtctc 37827111  T
Q  559 cttttgataccaaactaaaggaatatcattttgatcatctatatggttttggttatgaccggtcaagagatgattacttggttgtttca 647  Q
    ||||| |  ||||  |  | |||||| |||| | |  ||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  37827110 cttttaactccaatttggaagaatattatttcggttctctatatggttttggttatgaccagtctagagatgattacttggttgtttca 37827022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 408 - 722
Target Start/End: Original strand, 7877534 - 7877847
Alignment:
Q  408 gcttcactcaaccttaatttttcacttcctcgatcttattttactcctgatattagaggttcgtgtagaggctttatatttttgcattgttcttccaa-c 506  Q
    |||||||| ||| ||||||||||||||| | || |||||||| |   ||| ||||||||||| || ||||| |||||| ||||| | ||| | ||||| |    
T  7877534 gcttcactgaacattaatttttcacttcgtggaccttattttccggttgaaattagaggttcatgcagagggtttatacttttgtactgt-catccaatc 7877632  T
Q  507 atctgcatatggaatccatccaccagatttcataaacaaataccattgtctccttttgataccaaactaaaggaatatcattttgatcatctatatggtt 606  Q
    |||| ||||||||||||||||||  ||||| | |||||||||||  |||||||||||  | ||||| ||   | ||||  |     | || || ||||||    
T  7877633 atctacatatggaatccatccactggatttaaaaaacaaatacctgtgtctccttttcgttccaaattagcagcatattgtcgcattgatatacatggtt 7877732  T
Q  607 ttggttatgaccggtcaagagatgattacttggttgtttcattgtcctatgatccaaccatggatgatatttcaccaaattttgagtttttctcagtgag 706  Q
    ||||||||||||  |||||||||||||||||||| ||||||||||||||| |||||||||| | | || ||||| || ||||  ||||||||||| | ||    
T  7877733 ttggttatgaccaatcaagagatgattacttggtggtttcattgtcctataatccaaccatagttaat-tttcaacacatttgaagtttttctcatttag 7877831  T
Q  707 agataatacatggaaa 722  Q
    ||||||||||||||||    
T  7877832 agataatacatggaaa 7877847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 471 - 729
Target Start/End: Original strand, 48852534 - 48852792
Alignment:
Q  471 tgtagaggctttatatttttgcattgttcttccaacatctgcatatggaatccatccaccagatttcataaacaaataccattgtctccttttgatacca 570  Q
    |||||||||||||||||||||||  |||||||  | || |   ||||||||||||||||| || |||| ||||||||||| ||||||||  ||||| | |    
T  48852534 tgtagaggctttatatttttgcaccgttcttcagagatttatctatggaatccatccaccggagttcacaaacaaatacctttgtctcccattgattcga 48852633  T
Q  571 aactaaa-ggaatatcattttgatcatctatatggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcctatgatccaaccatgg 669  Q
       || | || | ||  || || | |||||||||||||||| ||||||| |||||  |||||||||||||| |||| | ||||||||||| ||||| | |    
T  48852634 ggttagatggcacatatttctgtt-atctatatggttttgggtatgacccgtcaaccgatgattacttggtagttttaatgtcctatgatacaaccttag 48852732  T
Q  670 atgatatttcaccaaattttgagtttttctcagtgagagataatacatggaaacaaattg 729  Q
     | || ||||| || |||| |||||||||||| |||||| |||| |||||||| ||||||    
T  48852733 ctaatgtttcatcacatttagagtttttctcattgagagctaatgcatggaaagaaattg 48852792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 603 - 729
Target Start/End: Original strand, 7908325 - 7908445
Alignment:
Q  603 ggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcctatgatccaaccatggatgatatttcaccaaattttgagtttttctcag 702  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||| ||  | ||    ||||| || ||||  ||||||||||||    
T  7908325 ggttttggttatgaccagtcaagagatgattacttggtggtttcattgtcctataatccatcc--gcat----tttcaacacatttgaagtttttctcag 7908418  T
Q  703 tgagagataatacatggaaacaaattg 729  Q
    | |||||||||||||||||| ||||||    
T  7908419 ttagagataatacatggaaagaaattg 7908445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 408 - 563
Target Start/End: Complemental strand, 7774093 - 7773938
Alignment:
Q  408 gcttcactcaaccttaatttttcacttcctcgatcttattttactcctgatattagaggttcgtgtagaggctttatatttttgcattgttcttccaaca 507  Q
    |||||| | |||||||||||||| |||||   |||||||||| |  |||| |||||||||||||||||||| |||||| ||||| || ||    | ||||    
T  7774093 gcttcagtgaaccttaatttttcgcttccagaatcttattttccggctgaaattagaggttcgtgtagagggtttatacttttgtatcgtgacccaaaca 7773994  T
Q  508 tctgcatatggaatccatccaccagatttcataaacaaataccattgtctcctttt 563  Q
    ||| ||||||||||||||||||  ||||| | |||||||||||   ||||||||||    
T  7773993 tctacatatggaatccatccactggatttaaaaaacaaatacctgggtctcctttt 7773938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 459 - 561
Target Start/End: Original strand, 48870401 - 48870503
Alignment:
Q  459 attagaggttcgtgtagaggctttatatttttgcattgttcttccaacatctgcatatggaatccatccaccagatttcataaacaaataccattgtctc 558  Q
    |||| |||||| ||||||||||||||||| ||||||||| || | | | ||| | ||||||||||||||||| ||||||| ||||||||||| |||| ||    
T  48870401 attaaaggttcatgtagaggctttatattattgcattgtgctccaaccctctacctatggaatccatccaccggatttcacaaacaaatacctttgtgtc 48870500  T
Q  559 ctt 561  Q
    |||    
T  48870501 ctt 48870503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 459 - 561
Target Start/End: Original strand, 48886087 - 48886189
Alignment:
Q  459 attagaggttcgtgtagaggctttatatttttgcattgttcttccaacatctgcatatggaatccatccaccagatttcataaacaaataccattgtctc 558  Q
    |||| |||||| ||||||||||||||||| ||||||||| || | | | ||| | ||||||||||||||||| ||||||| ||||||||||| |||| ||    
T  48886087 attaaaggttcatgtagaggctttatattattgcattgtgctccaaccctctacctatggaatccatccaccggatttcacaaacaaatacctttgtgtc 48886186  T
Q  559 ctt 561  Q
    |||    
T  48886187 ctt 48886189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 208 - 277
Target Start/End: Original strand, 7822585 - 7822654
Alignment:
Q  208 aggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatctccgatc 277  Q
    |||||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||    
T  7822585 aggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctctgatc 7822654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 7813096 - 7813160
Alignment:
Q  208 aggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatctc 272  Q
    |||||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||    
T  7813096 aggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctc 7813160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 184 - 300
Target Start/End: Complemental strand, 45372543 - 45372427
Alignment:
Q  184 gaattgatcattcaaattttggtaaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatctccgatcacaatt 283  Q
    |||||||| ||||||||| |  |||||||||| ||||| | ||||||||||||||| || |||||||| |||||||||||| | ||||| ||||   |||    
T  45372543 gaattgatgattcaaattctactaaggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggttttctattatctctgatcctcatt 45372444  T
Q  284 ttgctaattctcatttt 300  Q
    |||| ||||| ||||||    
T  45372443 ttgcaaattcacatttt 45372427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 184 - 300
Target Start/End: Complemental strand, 48156913 - 48156797
Alignment:
Q  184 gaattgatcattcaaattttggtaaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatctccgatcacaatt 283  Q
    |||||||| ||||||||  |  || |||| || ||||| | |||| |||||||||||||||||||||| |||||||||||||| |||||||||    |||    
T  48156913 gaattgataattcaaatccttttatggttaccggtgaagtctcttctacgtttcaagtgcgtttgtaagtcttggttttctcttatctccgatactcatt 48156814  T
Q  284 ttgctaattctcatttt 300  Q
    |||| ||||||||||||    
T  48156813 ttgcaaattctcatttt 48156797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 459 - 563
Target Start/End: Original strand, 48875705 - 48875809
Alignment:
Q  459 attagaggttcgtgtagaggctttatatttttgcattgttcttccaacatctgcatatggaatccatccaccagatttcataaacaaataccattgtctc 558  Q
    |||| |||||| || |||||||||||| | |||||||||| ||| | | ||| | ||||||||||||||||| ||||||| |||||||||||  ||||||    
T  48875705 attaaaggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccaccggatttcacaaacaaatacctatgtctc 48875804  T
Q  559 ctttt 563  Q
    |||||    
T  48875805 ctttt 48875809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 208 - 572
Target Start/End: Original strand, 7771020 - 7771379
Alignment:
Q  208 aggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatctccgatcacaattttgctaattctcattttgaactta 307  Q
    |||||||| ||||| | ||||||| ||||||| ||||||||||| |||||||||||||| ||||| ||||   | ||||  ||||| |||||| |||||     
T  7771020 aggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatcctcactttgaaaattcacattttcaacttg 7771119  T
Q  308 gtgccgaatcacacactcgtagaattttatccatatcatcacattcacctcttgagtttcgatctatagattttgagtcatcatcgctaacaatcattgg 407  Q
       | | | |||||||| ||||| |||||| ||||||| | ||   | ||| |||  |||||||||||||||||||  |||  |   |||| || ||       
T  7771120 cctctgcaacacacacttgtagatttttatgcatatcaactca---atctcatgaaattcgatctatagattttgaagcat--ttcttaacgatgatcct 7771214  T
Q  408 gcttcactcaaccttaatttttcacttcctcgatcttattttactcctgatattagaggttcgtgtagaggctttatatttttgcattgttcttccaaca 507  Q
    |||||| | |||||||||||||| |||||   |||||||||| ||  ||| |||||||||||||||||||| |||||| ||||| |  |  || | ||||    
T  7771215 gcttcagtgaaccttaatttttcgcttccagaatcttattttcctgttgaaattagaggttcgtgtagagggtttatacttttgtaccgacctccaaaca 7771314  T
Q  508 tctgcatatggaatccatccaccagatttcataaacaaataccattgtctccttttgataccaaa 572  Q
    ||  | |||||||||||||||   ||||| | | |||||||||  ||||||| |||||| |||||    
T  7771315 tccacttatggaatccatccattggatttaaaacacaaataccggtgtctccctttgattccaaa 7771379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 7800253 - 7800311
Alignment:
Q  208 aggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctct 266  Q
    |||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||||||    
T  7800253 aggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctct 7800311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 171 - 572
Target Start/End: Original strand, 7789668 - 7790064
Alignment:
Q  171 gtatctgcattacgaattgatcattcaaattttggtaaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatc 270  Q
    |||||||| | | ||| |||| || |||||| || | |||||||| ||||| | ||||||| ||||||| ||||||||||| |||||||||||| | |||    
T  7789668 gtatctgcctcatgaactgataatccaaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttcttttatc 7789767  T
Q  271 tccgatcacaattttgctaattctcattttgaacttagtgccgaatcacacactcgtagaattttatccatatcatcacattcacctcttgagtttcgat 370  Q
    |||||||   | ||||  ||||| |||||| |||||    ||| | |||||||| ||||| ||||||  |||||| | ||   | ||| |||  || |||    
T  7789768 tccgatcctcactttgaaaattcacattttcaacttgcctccgcaacacacacttgtagatttttatgtatatcaactca---atctcatgaaatttgat 7789864  T
Q  371 ctatagattttgagtcatcatcgctaacaatcattgggcttcactcaaccttaatttttcacttcctcgatcttattttactcctgatattagaggttcg 470  Q
    |||||||||||||  |||  |   |||| || ||   |||||| | |||||||||||||| |||||   |||||||||| ||  | | ||||||||||||    
T  7789865 ctatagattttgaagcat--ttcttaacgatgatcctgcttcagtgaaccttaatttttcgcttccagaatcttattttcctgtttaaattagaggttcg 7789962  T
Q  471 tgtagaggctttatatttttgcattgttcttccaacatctgcatatggaatccatccaccagatttcataaacaaataccattgtctccttttgatacca 570  Q
    |||||||| |||||| ||||| |  |  || | ||||||  | ||||||||||||||||  ||||| | | |||||||||  ||||||| |||||| |||    
T  7789963 tgtagagggtttatacttttgtaccgacctccaaacatccacttatggaatccatccactggatttaaaacacaaataccggtgtctccctttgattcca 7790062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 173 - 329
Target Start/End: Original strand, 48870123 - 48870279
Alignment:
Q  173 atctgcattacgaattgatcattcaaattttggtaaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatctc 272  Q
    |||||||| | ||||||||  |||||||| || | ||| | || ||||| | |||||| |||||||| ||||||||||| |||||||||| ||| |||||    
T  48870123 atctgcatcatgaattgatagttcaaattctgctgaggctaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatctc 48870222  T
Q  273 cgatcacaattttgctaattctcattttgaacttagtgccgaatcacacactcgtag 329  Q
    ||||| |  |||||| ||||| |||||| | || |  |||| | |||||||||||||    
T  48870223 cgatcccctttttgcaaattcacattttcatctcacagccgcaacacacactcgtag 48870279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 173 - 329
Target Start/End: Original strand, 48885809 - 48885965
Alignment:
Q  173 atctgcattacgaattgatcattcaaattttggtaaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatctc 272  Q
    |||||||| | ||||||||  |||||||| || | ||| | || ||||| | |||||| |||||||| ||||||||||| |||||||||| ||| |||||    
T  48885809 atctgcatcatgaattgatagttcaaattctgctgaggctaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatctc 48885908  T
Q  273 cgatcacaattttgctaattctcattttgaacttagtgccgaatcacacactcgtag 329  Q
    ||||| |  |||||| ||||| |||||| | || |  |||| | |||||||||||||    
T  48885909 cgatcccctttttgcaaattcacattttcatctcacagccgcaacacacactcgtag 48885965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 211 - 307
Target Start/End: Complemental strand, 49041597 - 49041501
Alignment:
Q  211 ttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatctccgatcacaattttgctaattctcattttgaactta 307  Q
    ||||| ||||| | ||||||  ||||||| |||||||| || |||||||||||||| ||||| |||| | ||||||| |||||||||||| ||||||    
T  49041597 ttgccagtgaagtctcttatttgtttcaaatgcgtttgcaagtcttggttttctcttatctctgatccccattttgcaaattctcatttttaactta 49041501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 466 - 565
Target Start/End: Complemental strand, 48170789 - 48170690
Alignment:
Q  466 gttcgtgtagaggctttatatttttgcattgttcttccaacatctgcatatggaatccatccaccagatttcataaacaaataccattgtctccttttga 565  Q
    |||| ||||||||||||||||||||||||  |  ||| |   ||| | ||||||||||||||||| || |||||||||||||||| ||||||||| ||||    
T  48170789 gttcctgtagaggctttatatttttgcatcataattcaagtttctacctatggaatccatccacccgagttcataaacaaatacctttgtctcctattga 48170690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 206 - 272
Target Start/End: Complemental strand, 45366685 - 45366619
Alignment:
Q  206 taaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatctc 272  Q
    ||||||| || ||||| | ||||||||||||||||||||||||||| | |||||||||||| |||||    
T  45366685 taaggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagtattggttttctcttatctc 45366619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 595 - 665
Target Start/End: Complemental strand, 48170651 - 48170581
Alignment:
Q  595 atctatatggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcctatgatccaacc 665  Q
    |||||||||||||||| ||||| | || ||||||||||||||| || |||||| |||||| ||||||||||    
T  48170651 atctatatggttttgggtatgatcagttaagagatgattacttagtggtttcagtgtcctgtgatccaacc 48170581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 225 - 307
Target Start/End: Original strand, 48891042 - 48891124
Alignment:
Q  225 tcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatctccgatcacaattttgctaattctcattttgaactta 307  Q
    ||||||||||||||| ||||||||||| ||||||||||||||  |||| ||||   ||||||| ||||| |||||| ||||||    
T  48891042 tcttatacgtttcaaatgcgtttgtaagtcttggttttctcttgtctcagatcctcattttgcaaattcgcattttcaactta 48891124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 277
Target Start/End: Complemental strand, 50251307 - 50251201
Alignment:
Q  171 gtatctgcattacgaattgatcattcaaattttggtaaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatc 270  Q
    |||||||| | |||||||||||| ||||||||| || |||||||| |||||   ||||||||  || ||||| |||| ||| |||||||||||||| |||    
T  50251307 gtatctgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctcttatacaattaaagtgggtttctaagtcttggttttctcttatc 50251208  T
Q  271 tccgatc 277  Q
    || ||||    
T  50251207 tctgatc 50251201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 590 - 635
Target Start/End: Original strand, 7813464 - 7813509
Alignment:
Q  590 tgatcatctatatggttttggttatgaccggtcaagagatgattac 635  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||    
T  7813464 tgataatctatatggttttggttatgaccagtcaagagatgattac 7813509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 590 - 635
Target Start/End: Original strand, 7822953 - 7822998
Alignment:
Q  590 tgatcatctatatggttttggttatgaccggtcaagagatgattac 635  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||    
T  7822953 tgataatctatatggttttggttatgaccagtcaagagatgattac 7822998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 601 - 640
Target Start/End: Complemental strand, 7237806 - 7237767
Alignment:
Q  601 atggttttggttatgaccggtcaagagatgattacttggt 640  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  7237806 atggttttggttatgaccagtcaagagatgattacttggt 7237767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 601 - 640
Target Start/End: Original strand, 7771396 - 7771435
Alignment:
Q  601 atggttttggttatgaccggtcaagagatgattacttggt 640  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  7771396 atggttttggttatgaccagtcaagagatgattacttggt 7771435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 601 - 640
Target Start/End: Original strand, 7790081 - 7790120
Alignment:
Q  601 atggttttggttatgaccggtcaagagatgattacttggt 640  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  7790081 atggttttggttatgaccagtcaagagatgattacttggt 7790120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 307
Target Start/End: Original strand, 47207567 - 47207649
Alignment:
Q  225 tcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatctccgatcacaattttgctaattctcattttgaactta 307  Q
    |||||||||||| ||| | ||||| || ||||| ||||||||||||||||| |   ||||| ||||||| |||||||||||||    
T  47207567 tcttatacgttttaagagtgtttggaagtcttgattttctctcatctccgacccacatttttctaattcacattttgaactta 47207649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 272
Target Start/End: Complemental strand, 7238227 - 7238118
Alignment:
Q  163 acactgtcgtatctgcattacgaattgatcattcaaattttggtaaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggtttt 262  Q
    ||||||| |||||||| | | ||| | ||||| |||||| || | |||||||| ||||| | ||||||  ||||||| || |||||||| ||||||||||    
T  7238227 acactgttgtatctgcctcatgaactaatcatccaaattctgatgaggttgccagtgaagtctcttatctgtttcaaatgtgtttgtaagtcttggtttt 7238128  T
Q  263 ctctcatctc 272  Q
    |||| |||||    
T  7238127 ctcttatctc 7238118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 277
Target Start/End: Original strand, 7904624 - 7904717
Alignment:
Q  184 gaattgatcattcaaattttggtaaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatctccgatc 277  Q
    |||||||| |||||||| ||| |  ||||||| ||||| | ||||||||||||||| || |||||||| |  ||||||||||| ||||| ||||    
T  7904624 gaattgattattcaaatcttgatgtggttgcctgtgaagtctcttatacgtttcaaatgtgtttgtaagttatggttttctcttatctctgatc 7904717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 600 - 657
Target Start/End: Complemental strand, 48147801 - 48147744
Alignment:
Q  600 tatggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcctatg 657  Q
    ||||||||||| ||||||| || || ||||||||||||||| |||||||| |||||||    
T  48147801 tatggttttgggtatgaccagttaacagatgattacttggtggtttcattctcctatg 48147744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 601 - 662
Target Start/End: Complemental strand, 48705442 - 48705381
Alignment:
Q  601 atggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcctatgatcca 662  Q
    |||||||||| ||||| | ||||| |||||||||||||||||||||| |||||  |||||||    
T  48705442 atggttttggatatgatcagtcaacagatgattacttggttgtttcaatgtccgttgatcca 48705381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 232 - 305
Target Start/End: Original strand, 48875486 - 48875559
Alignment:
Q  232 cgtttcaagtgcgtttgtaaatcttggttttctctcatctccgatcacaattttgctaattctcattttgaact 305  Q
    |||||||| |||||||| || ||||||||||||||||||||||| | | ||||| | ||||| |||||| ||||    
T  48875486 cgtttcaaatgcgtttgcaagtcttggttttctctcatctccgaaccccattttacaaattcacattttcaact 48875559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 504 - 572
Target Start/End: Complemental strand, 7237891 - 7237823
Alignment:
Q  504 aacatctgcatatggaatccatccaccagatttcataaacaaataccattgtctccttttgataccaaa 572  Q
    ||||||| | ||||||||||||||||  ||||| | |||||||||||  |||||||||||||| |||||    
T  7237891 aacatctacgtatggaatccatccactggatttaaaaaacaaatacccgtgtctccttttgattccaaa 7237823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 225 - 305
Target Start/End: Original strand, 7877353 - 7877433
Alignment:
Q  225 tcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatctccgatcacaattttgctaattctcattttgaact 305  Q
    ||||||||||||||| ||| |||||||    ||||||||||| ||||| |||| ||||||||| ||||| |||||| ||||    
T  7877353 tcttatacgtttcaaatgcatttgtaagctatggttttctcttatctctgatcccaattttgcaaattcacattttcaact 7877433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 408 - 572
Target Start/End: Original strand, 7908142 - 7908306
Alignment:
Q  408 gcttcactcaaccttaatttttcacttcctcgatcttattttactcctgatattagaggttcgtgtagaggctttatatttttgcattgttcttccaaca 507  Q
    |||||||||||| ||| |||||| ||| | |||||| ||||| |   ||| ||||||||||| |||||||| |||||| ||||| |  || || |  |||    
T  7908142 gcttcactcaacattactttttcgcttacccgatctcattttccggttgaaattagaggttcatgtagagggtttatacttttgtaccgtcctccagaca 7908241  T
Q  508 tctgcatatggaatccatccaccagatttcataaacaaataccattgtctccttttgataccaaa 572  Q
    ||| ||||||||||||||| ||  ||||| | ||||| ||||   |||||||| ||||| |||||    
T  7908242 tctacatatggaatccatctactggatttaaaaaacatatacacctgtctcctgttgattccaaa 7908306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 184 - 272
Target Start/End: Original strand, 48862833 - 48862921
Alignment:
Q  184 gaattgatcattcaaattttggtaaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatctc 272  Q
    ||||||||||| | |||  || ||||||| || ||||| | |||||| |||||||| |||||||| || |||||||||||||| |||||    
T  48862833 gaattgatcatcctaatcctgctaaggttaccggtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttatctc 48862921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 601 - 656
Target Start/End: Complemental strand, 7773900 - 7773845
Alignment:
Q  601 atggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcctat 656  Q
    |||||||||||||||||| |  |||||||||||||||||| |||  ||||||||||    
T  7773900 atggttttggttatgaccaggtaagagatgattacttggtggttgtattgtcctat 7773845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 307
Target Start/End: Original strand, 7907941 - 7908040
Alignment:
Q  208 aggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatctccgatcacaattttgctaattctcattttgaactta 307  Q
    |||||||| ||||| | ||||| |||||||||||  ||| |||| || ||||||||||| ||||| | || | ||||||| ||||| |||||| ||||||    
T  7907941 aggttgccggtgaagtctcttacacgtttcaagtctgttcgtaagtcatggttttctcttatctctgctccccattttgcaaattcacattttcaactta 7908040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 45385228 - 45385181
Alignment:
Q  229 atacgtttcaagtgcgtttgtaaatcttggttttctctcatctccgat 276  Q
    ||||||||||| | ||||||||| ||||||||||||||| ||||||||    
T  45385228 atacgtttcaaatccgtttgtaagtcttggttttctctcgtctccgat 45385181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 266
Target Start/End: Original strand, 48902509 - 48902624
Alignment:
Q  151 atggagaagacaacactgtcgtatctgcattacgaattgatcattcaaattttggtaaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgta 250  Q
    ||||||||||  |||||| ||||||| | | | ||||||||||| |||||||||    ||||||| || || | ||| || |||||||| || |||||||    
T  48902509 atggagaagaagacactgccgtatctacctcatgaattgatcatccaaattttgcagtggttgccggtaaagtctctcattcgtttcaaatgtgtttgta 48902608  T
Q  251 aatcttggttttctct 266  Q
    | ||||||||||||||    
T  48902609 agtcttggttttctct 48902624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 514 - 561
Target Start/End: Complemental strand, 49044357 - 49044310
Alignment:
Q  514 tatggaatccatccaccagatttcataaacaaataccattgtctcctt 561  Q
    |||||||||||||||| ||| |||| ||||||||||| ||||||||||    
T  49044357 tatggaatccatccactagagttcacaaacaaatacctttgtctcctt 49044310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 687 - 729
Target Start/End: Complemental strand, 48705374 - 48705332
Alignment:
Q  687 tttgagtttttctcagtgagagataatacatggaaacaaattg 729  Q
    ||||||||||||||| |||||| ||||||||||||| ||||||    
T  48705374 tttgagtttttctcattgagagttaatacatggaaagaaattg 48705332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 49048579 - 49048505
Alignment:
Q  13 tcatcatatttggagtttttctcattcagagataa-acatggaaacaaattgagggtgctggcttcccttatatg 86  Q
    |||||| |||||||||||||||| || |||||||| | ||||||| ||||||||||| ||  | |||||||||||    
T  49048579 tcatcacatttggagtttttctcgttgagagataatatatggaaagaaattgagggtactcacatcccttatatg 49048505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 233 - 287
Target Start/End: Original strand, 50672161 - 50672215
Alignment:
Q  233 gtttcaagtgcgtttgtaaatcttggttttctctcatctccgatcacaattttgc 287  Q
    |||||||||| |||| ||| || ||| ||||||||||||| ||||||||||||||    
T  50672161 gtttcaagtgtgtttctaagtcatggctttctctcatctctgatcacaattttgc 50672215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 598 - 631
Target Start/End: Original strand, 7800629 - 7800662
Alignment:
Q  598 tatatggttttggttatgaccggtcaagagatga 631  Q
    ||||||||||||||||||||| ||||||||||||    
T  7800629 tatatggttttggttatgaccagtcaagagatga 7800662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 514 - 559
Target Start/End: Complemental strand, 33133975 - 33133930
Alignment:
Q  514 tatggaatccatccaccagatttcataaacaaataccattgtctcc 559  Q
    |||||||||||| |||| || |||||||||||||||| ||||||||    
T  33133975 tatggaatccattcacccgagttcataaacaaatacctttgtctcc 33133930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 48735777 - 48735712
Alignment:
Q  208 aggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatctcc 273  Q
    ||||| || ||||| | |||||| |||||||| || |||||||| |||||||||||||| ||||||    
T  48735777 aggttaccggtgaagtctcttattcgtttcaaatgtgtttgtaagtcttggttttctcttatctcc 48735712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 1e-46; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 459 - 658
Target Start/End: Original strand, 48883657 - 48883856
Alignment:
Q  459 attagaggttcgtgtagaggctttatatttttgcattgttcttccaacatctgcatatggaatccatccaccagatttcataaacaaataccattgtctc 558  Q
    |||| ||||||||||||||| ||| | ||||||||| |||||||||||||||||||||||||||||| |||  ||||||| ||||||||||| |||||||    
T  48883657 attaaaggttcgtgtagagggtttctgtttttgcatggttcttccaacatctgcatatggaatccatacactggatttcacaaacaaatacctttgtctc 48883756  T
Q  559 cttttgataccaaactaaaggaatatcattttgatcatctatatggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcctatga 658  Q
    ||||| || |||    | | | | || |||| |||||||||||||||||||||||||||| |||||||||||||||| |||| |||||| ||||||||||    
T  48883757 ctttttattccatttcagaagtacattatttcgatcatctatatggttttggttatgacccgtcaagagatgattacatggtggtttcaatgtcctatga 48883856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 459 - 653
Target Start/End: Original strand, 12200163 - 12200357
Alignment:
Q  459 attagaggttcgtgtagaggctttatatttttgcattgttcttccaacatctgcatatggaatccatccaccagatttcataaacaaataccattgtctc 558  Q
    |||| |||||| || ||||| |||||||| ||||| ||||   | || |||| | |||||||||||||| | || ||||| ||| ||||||| |||||||    
T  12200163 attaaaggttcatgcagagggtttatattcttgcactgttggacaaatatctacgtatggaatccatcctctaggtttcacaaaaaaatacctttgtctc 12200262  T
Q  559 cttttgataccaaactaaaggaatatcattttgatcatctatatggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcc 653  Q
    ||||||||   ||  || | | ||| |||    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  12200263 cttttgatttgaagttacatgcataccatcgacatcatctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 12200357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 459 - 653
Target Start/End: Original strand, 12444591 - 12444785
Alignment:
Q  459 attagaggttcgtgtagaggctttatatttttgcattgttcttccaacatctgcatatggaatccatccaccagatttcataaacaaataccattgtctc 558  Q
    |||| |||||| || ||||| |||||||| ||||| ||||   | || |||| | |||||||||||||| | || ||||| ||| ||||||| |||||||    
T  12444591 attaaaggttcatgcagagggtttatattcttgcactgttggacaaatatctacgtatggaatccatcctctaggtttcacaaaaaaatacctttgtctc 12444690  T
Q  559 cttttgataccaaactaaaggaatatcattttgatcatctatatggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcc 653  Q
    ||||||||   ||  || | | ||| |||    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  12444691 cttttgatttgaagttacatgcataccatcgacatcatctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 12444785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 208 - 335
Target Start/End: Original strand, 15348478 - 15348605
Alignment:
Q  208 aggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatctccgatcacaattttgctaattctcattttgaactta 307  Q
    ||||| || ||||| | ||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||   | || || ||||| |||||| || |||    
T  15348478 aggttaccggtgaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaatta 15348577  T
Q  308 gtgccgaatcacacactcgtagaatttt 335  Q
      |||| | |||||||||||||||||||    
T  15348578 ccgccgcaacacacactcgtagaatttt 15348605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 603 - 665
Target Start/End: Original strand, 12195300 - 12195362
Alignment:
Q  603 ggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcctatgatccaacc 665  Q
    ||||||||||||||| | | |||||||||||||||||| |||| |||||||||||||||||||    
T  12195300 ggttttggttatgacggattaagagatgattacttggtcgttttattgtcctatgatccaacc 12195362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 603 - 665
Target Start/End: Original strand, 12439728 - 12439790
Alignment:
Q  603 ggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcctatgatccaacc 665  Q
    ||||||||||||||| | | |||||||||||||||||| |||| |||||||||||||||||||    
T  12439728 ggttttggttatgacggattaagagatgattacttggtcgttttattgtcctatgatccaacc 12439790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 459 - 564
Target Start/End: Original strand, 12195156 - 12195261
Alignment:
Q  459 attagaggttcgtgtagaggctttatatttttgcattgttcttccaacatctgcatatggaatccatccaccagatttcataaacaaataccattgtctc 558  Q
    |||| ||||||||| ||||| |||||||| ||| ||||||   | ||| ||| | |||||||||||||| | |||||||| ||| |||||  ||||||||    
T  12195156 attaaaggttcgtgcagagggtttatattattgaattgtttgacaaacctctacgtatggaatccatcctctagatttcacaaagaaataaaattgtctc 12195255  T
Q  559 cttttg 564  Q
    ||||||    
T  12195256 cttttg 12195261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 459 - 564
Target Start/End: Original strand, 12439584 - 12439689
Alignment:
Q  459 attagaggttcgtgtagaggctttatatttttgcattgttcttccaacatctgcatatggaatccatccaccagatttcataaacaaataccattgtctc 558  Q
    |||| ||||||||| ||||| |||||||| ||| ||||||   | ||| ||| | |||||||||||||| | |||||||| ||| |||||  ||||||||    
T  12439584 attaaaggttcgtgcagagggtttatattattgaattgtttgacaaacctctacgtatggaatccatcctctagatttcacaaagaaataaaattgtctc 12439683  T
Q  559 cttttg 564  Q
    ||||||    
T  12439684 cttttg 12439689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 260
Target Start/End: Complemental strand, 4032361 - 4032326
Alignment:
Q  225 tcttatacgtttcaagtgcgtttgtaaatcttggtt 260  Q
    |||||||||||||||||| |||||||||||||||||    
T  4032361 tcttatacgtttcaagtgtgtttgtaaatcttggtt 4032326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 277
Target Start/End: Original strand, 12199899 - 12199992
Alignment:
Q  184 gaattgatcattcaaattttggtaaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatctccgatc 277  Q
    ||||| |||||||||||  || | |||||||| ||||| | |||| || ||||||| || |||||||| || ||||||||||| ||||| ||||    
T  12199899 gaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatc 12199992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 277
Target Start/End: Original strand, 12444327 - 12444420
Alignment:
Q  184 gaattgatcattcaaattttggtaaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatctccgatc 277  Q
    ||||| |||||||||||  || | |||||||| ||||| | |||| || ||||||| || |||||||| || ||||||||||| ||||| ||||    
T  12444327 gaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatc 12444420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 417 - 564
Target Start/End: Complemental strand, 47452165 - 47452018
Alignment:
Q  417 aaccttaatttttcacttcctcgatcttattttactcctgatattagaggttcgtgtagaggctttatatttttgcattgttcttccaacatctgcatat 516  Q
    |||||||||||||  ||||| | |||| | | || || ||| |||| |||||| |||||||| |||||| ||||   ||||||||| ||||||| |||||    
T  47452165 aaccttaattttttgcttccccaatctgagtataatcttgaaattaaaggttcatgtagagggtttatacttttaagttgttcttcaaacatctacatat 47452066  T
Q  517 ggaatccatccaccagatttcataaacaaataccattgtctccttttg 564  Q
    |||||||||||||  || |||| ||||||||||| ||| |||||||||    
T  47452065 ggaatccatccactggagttcacaaacaaatacctttgcctccttttg 47452018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 596 - 659
Target Start/End: Complemental strand, 11006041 - 11005978
Alignment:
Q  596 tctatatggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcctatgat 659  Q
    ||||||||||||||| |||||||  |||||||||||||||||||| || ||| |||||||||||    
T  11006041 tctatatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatgat 11005978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 596 - 659
Target Start/End: Complemental strand, 11024616 - 11024553
Alignment:
Q  596 tctatatggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcctatgat 659  Q
    ||||||||||||||| |||||||  |||||||||||||||||||| || ||| |||||||||||    
T  11024616 tctatatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatgat 11024553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 277
Target Start/End: Complemental strand, 11006461 - 11006355
Alignment:
Q  171 gtatctgcattacgaattgatcattcaaattttggtaaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatc 270  Q
    |||||||| | | ||||||||||| ||||| ||| | |||||||| ||||| |  ||||||||||||||||| |||||||| || |||||  |||| |||    
T  11006461 gtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatc 11006362  T
Q  271 tccgatc 277  Q
    || ||||    
T  11006361 tctgatc 11006355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 306
Target Start/End: Complemental strand, 11025023 - 11024901
Alignment:
Q  184 gaattgatcattcaaattttggtaaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatctccgatcacaatt 283  Q
    ||||||||||| |||||  || | ||||| || ||||| | ||| ||||||||||| ||||||||||| || |||||  |||| ||||| ||||| || |    
T  11025023 gaattgatcatacaaatcatgttgaggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcatggttagctcttatctctgatcataact 11024924  T
Q  284 ttgctaattctcattttgaactt 306  Q
    |||| || || ||||||||||||    
T  11024923 ttgcaaaatcgcattttgaactt 11024901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 409 - 533
Target Start/End: Complemental strand, 11024797 - 11024673
Alignment:
Q  409 cttcactcaaccttaatttttcacttcctcgatcttattttactcctgatattagaggttcgtgtagaggctttatatttttgcattgttcttccaacat 508  Q
    ||||||| ||||||||||||   |||||   |||||||| || || ||| |||| | |||| |||||||| |||||| |||||  |||||||||||||||    
T  11024797 cttcacttaaccttaattttatgcttcccgaatcttattctaatcttgaaattaaaagttcttgtagaggatttatagttttgacttgttcttccaacat 11024698  T
Q  509 ctgcatatggaatccatccaccaga 533  Q
     |   ||||||||||||| ||||||    
T  11024697 ttatctatggaatccatcgaccaga 11024673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 440 - 550
Target Start/End: Complemental strand, 11015754 - 11015644
Alignment:
Q  440 atcttattttactcctgatattagaggttcgtgtagaggctttatatttttgcattgttcttccaacatctgcatatggaatccatccaccagatttcat 539  Q
    |||||||| || || ||| |||| | |||| |||||||| |||||| |||||  ||||||||| ||||||| | ||||||||||||| ||  ||  |||     
T  11015754 atcttattctagtcttgaaattaaaagttcatgtagaggatttatagttttgacttgttcttcaaacatctacctatggaatccatcaactggacatcac 11015655  T
Q  540 aaacaaatacc 550  Q
    |||||||||||    
T  11015654 aaacaaatacc 11015644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 277
Target Start/End: Complemental strand, 47452393 - 47452300
Alignment:
Q  184 gaattgatcattcaaattttggtaaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatctccgatc 277  Q
    |||||||| || || || ||||| |||||||| ||||| | |||| |||| ||||||||| ||| ||| || ||||||||||| ||||| ||||    
T  47452393 gaattgataatccagatcttggtgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatc 47452300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 231 - 302
Target Start/End: Complemental strand, 21980083 - 21980012
Alignment:
Q  231 acgtttcaagtgcgtttgtaaatcttggttttctctcatctccgatcacaattttgctaattctcattttga 302  Q
    |||||||||||| |||||||| ||||||||||||||||||||  ||| ||| ||||| ||||| ||||||||    
T  21980083 acgtttcaagtgtgtttgtaagtcttggttttctctcatctctcatcccaactttgcgaattcacattttga 21980012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 466 - 560
Target Start/End: Original strand, 21015672 - 21015766
Alignment:
Q  466 gttcgtgtagaggctttatatttttgcattgttcttccaacatctgcatatggaatccatccaccagatttcataaacaaataccattgtctcct 560  Q
    |||| |||||||| ||||||||||||||   |  ||| ||||||| | |||||||||||||||| ||| |||| ||||||||||| |||||||||    
T  21015672 gttcatgtagagggtttatatttttgcaccatgattcaaacatctacctatggaatccatccactagagttcacaaacaaatacctttgtctcct 21015766  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 595 - 640
Target Start/End: Complemental strand, 21979727 - 21979682
Alignment:
Q  595 atctatatggttttggttatgaccggtcaagagatgattacttggt 640  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||    
T  21979727 atctatatggttttggttatgaccagtcaagaaatgattacttggt 21979682  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 21979631 - 21979564
Alignment:
Q  20 atttggagtttttctcattcagagataa-acatggaaacaaattgagggtgctggcttcccttatatg 86  Q
    |||||||| ||||||| || |||||||| || |||||||||||||||||||||   ||||||||||||    
T  21979631 atttggaggttttctctttgagagataatacctggaaacaaattgagggtgctcatttcccttatatg 21979564  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 457 - 572
Target Start/End: Complemental strand, 21979868 - 21979753
Alignment:
Q  457 atattagaggttcgtgtagaggctttatatttttgcattgttcttccaacatctgcatatggaatccatccaccagatttcataaacaaataccattgtc 556  Q
    |||||| |||||| |||||||| ||||||||||| || |||| ||| |   ||| ||||||||| || || ||  || |||| ||||||||||| |||||    
T  21979868 atattaaaggttcatgtagaggatttatatttttccactgtttttcaagactctacatatggaacccgtctactggacttcaaaaacaaatacctttgtc 21979769  T
Q  557 tccttttgataccaaa 572  Q
    |||| ||||| |||||    
T  21979768 tcctcttgattccaaa 21979753  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 455 - 550
Target Start/End: Original strand, 29696067 - 29696162
Alignment:
Q  455 tgatattagaggttcgtgtagaggctttatatttttgcattgttcttccaacatctgcatatggaatccatccaccagatttcataaacaaatacc 550  Q
    |||| ||| |||||||||||||||||||||| ||||| | ||||  || | | |||| |||||||||||||||||| ||||||| |||| ||||||    
T  29696067 tgattttaaaggttcgtgtagaggctttatacttttgaactgttactcaagcctctgtatatggaatccatccaccggatttcacaaacgaatacc 29696162  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 184 - 269
Target Start/End: Original strand, 29687643 - 29687728
Alignment:
Q  184 gaattgatcattcaaattttggtaaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcat 269  Q
    |||||||||||||||||  |  ||| ||| || ||||| | ||||||||| |||||||| |||||||| |||||||||||||||||    
T  29687643 gaattgatcattcaaatccttctaaagttaccagtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcat 29687728  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 307
Target Start/End: Original strand, 1812021 - 1812140
Alignment:
Q  188 tgatcattcaaattttggtaaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatctccgatcacaattttgc 287  Q
    ||||| ||||||||||| | ||||| || ||||| ||||| ||||||| ||| || |||||||| |  ||||||||||| |||||  ||| | | |||||    
T  1812021 tgatcgttcaaattttgttgaggttaccagtgaagtatctcatacgttccaaatgggtttgtaagttatggttttctcttatctcaaatccccactttgc 1812120  T
Q  288 taattctcattttgaactta 307  Q
     |||| ||||||| ||||||    
T  1812121 aaattatcattttcaactta 1812140  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 272
Target Start/End: Complemental strand, 42562776 - 42562729
Alignment:
Q  225 tcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatctc 272  Q
    |||||| |||||||| ||||||||||| |||||||||||||| |||||    
T  42562776 tcttattcgtttcaaatgcgtttgtaagtcttggttttctctaatctc 42562729  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 600 - 658
Target Start/End: Original strand, 29696203 - 29696261
Alignment:
Q  600 tatggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcctatga 658  Q
    ||||||||||| ||||||  ||||| |||||||||||||||  ||||| ||||||||||    
T  29696203 tatggttttgggtatgacgagtcaacagatgattacttggtgatttcaatgtcctatga 29696261  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 179113 - 179162
Alignment:
Q  20 atttggagtttttctcattcagagataa-acatggaaacaaattgagggt 68  Q
    |||||||| |||||||||| |||||||| ||||||||| |||||||||||    
T  179113 atttggagattttctcattgagagataatacatggaaagaaattgagggt 179162  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 600 - 659
Target Start/End: Original strand, 24310168 - 24310227
Alignment:
Q  600 tatggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcctatgat 659  Q
    ||||||||||||||||||  ||||||||||||||||||||| |||| | | |||||||||    
T  24310168 tatggttttggttatgacgagtcaagagatgattacttggtagttttagtatcctatgat 24310227  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 464 - 550
Target Start/End: Original strand, 24310047 - 24310133
Alignment:
Q  464 aggttcgtgtagaggctttatatttttgcattgttcttccaacatctgcatatggaatccatccaccagatttcataaacaaatacc 550  Q
    |||||| |||||||| |||||||| ||| | |||| ||| ||||| | | ||||||||||||||||| || |||||| |||||||||    
T  24310047 aggttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagttcatagacaaatacc 24310133  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 24322076 - 24322142
Alignment:
Q  206 taaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatctc 272  Q
    |||||||||  ||||| | |||||| |||||||| ||||||||||| |||||||||||||| |||||    
T  24322076 taaggttgctggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 24322142  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 600 - 659
Target Start/End: Original strand, 24367144 - 24367203
Alignment:
Q  600 tatggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcctatgat 659  Q
    ||||||||||| ||||||  ||||| ||||||||||||||| ||||| || |||||||||    
T  24367144 tatggttttgggtatgacaagtcaacagatgattacttggtggtttcgttatcctatgat 24367203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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