View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19520_high_76 (Length: 237)

Name: NF19520_high_76
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19520_high_76
NF19520_high_76
[»] scaffold0433 (1 HSPs)
scaffold0433 (1-221)||(100-321)
[»] chr4 (2 HSPs)
chr4 (1-221)||(3860356-3860577)
chr4 (1-221)||(3869113-3869334)


Alignment Details
Target: scaffold0433 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 321 - 100
Alignment:
Q  1 ttgtgattattttcaatttaaaatttgcaagagctataagttagaaataagaattcaagatcgggtt-gggaggttttcacaaaagaacatccaaaatgt 99  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |    
T  321 ttgtgattattttcaatttaaaatttgcaagagcaataagttagaaataagaattcaagatcgggtttgggaggttttcacaaaagaacatccaaagtat 222  T
Q  100 acaataatatattctcttgatggtgtttatgaacgaaaatcgtgctgaataaagagaatgatcttgattaaaaacttggattaggtttgttgatgctgta 199  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  221 acaataaaatattctcttgatggtgtttatgaacgaaaatcgtgctgaataaagagaatgatcttgattaaaaacttggattaggtttgttgatgctgta 122  T
Q  200 atcaagaagaaatagaagtttg 221  Q
    ||||||||||||||||||||||    
T  121 atcaagaagaaatagaagtttg 100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 3860356 - 3860577
Alignment:
Q  1 ttgtgattattttcaatttaaaatttgcaagagctataagttagaaataagaattcaagatcgggtt-gggaggttttcacaaaagaacatccaaaatgt 99  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |    
T  3860356 ttgtgattattttcaatttaaaatttgcaagagcaataagttagaaataagaattcaagatcgggtttgggaggttttcacaaaagaacatccaaagtat 3860455  T
Q  100 acaataatatattctcttgatggtgtttatgaacgaaaatcgtgctgaataaagagaatgatcttgattaaaaacttggattaggtttgttgatgctgta 199  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3860456 acaataaaatattctcttgatggtgtttatgaacgaaaatcgtgctgaataaagagaatgatcttgattaaaaacttggattaggtttgttgatgctgta 3860555  T
Q  200 atcaagaagaaatagaagtttg 221  Q
    ||||||||||||||||||||||    
T  3860556 atcaagaagaaatagaagtttg 3860577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 3869113 - 3869334
Alignment:
Q  1 ttgtgattattttcaatttaaaatttgcaagagctataagttagaaataagaattcaagatcgggtt-gggaggttttcacaaaagaacatccaaaatgt 99  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |    
T  3869113 ttgtgattattttcaatttaaaatttgcaagagcaataagttagaaataagaattcaagatcgggtttgggaggttttcacaaaagaacatccaaagtat 3869212  T
Q  100 acaataatatattctcttgatggtgtttatgaacgaaaatcgtgctgaataaagagaatgatcttgattaaaaacttggattaggtttgttgatgctgta 199  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3869213 acaataaaatattctcttgatggtgtttatgaacgaaaatcgtgctgaataaagagaatgatcttgattaaaaacttggattaggtttgttgatgctgta 3869312  T
Q  200 atcaagaagaaatagaagtttg 221  Q
    ||||||||||||||||||||||    
T  3869313 atcaagaagaaatagaagtttg 3869334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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