View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_low_1 (Length: 1540)
Name: NF19520_low_1
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 651; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 16 - 844
Target Start/End: Complemental strand, 36660008 - 36659183
Alignment:
| Q |
16 |
gttttcactagttcaaagcgatttttccaattttaaacctaagtcttaagactggaaattttttattcatgtttggaccaatatcaacttctgnnnnnnn |
115 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36660008 |
gttttcactggttcaaagcgatttttccaattttaaacctaagtcttatgactggaaattttttattcatgtttggaccaatatcaacttctgttttttt |
36659909 |
T |
|
| Q |
116 |
gttaaaatggttgaactgtggagaatgaaacccaaaacctttcaatatgaccttgttttaaaaacattggtaataataccaaagatattataaaggaaat |
215 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36659908 |
gttaaaatggttgaactgtggagaatgaaacccaagacctttcaatatgaccttgttttaaaaacattggtaataataccgaagatattataaaggaaat |
36659809 |
T |
|
| Q |
216 |
tcattttcatcttatctgtcaaaattatttaactgtcattatgacaacgattattatctgatgaaatacaatagaacatgaccaactttcttctagttga |
315 |
Q |
| |
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| |||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36659808 |
ttattttcatcttatctgtcaaaattatttaagtgttattatgacaacgattat---ctgatgaaatacaatagaacacgaccaactttcttctagttga |
36659712 |
T |
|
| Q |
316 |
ataataaagtaagtttaagttatatttttctctcctaagatatgtttaaattacactctctgcgttgcaaagagtttaatgttgtctccctttataagac |
415 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
36659711 |
ataataaagtaagtttaagttatatttttctctcctaaaatatgcttaaattacactctctgcgttacatagagtttaatgttgtctccctttataagac |
36659612 |
T |
|
| Q |
416 |
aaagcataggttggttaccttacactacttcaggtgaaacaagttatttatgtaattgttaaaaatatcatatcctgcgttgtttattgattgatatata |
515 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
36659611 |
aaagcataggttggttaccttacactacttcaggcgaaacaagttatttatgtaattgttaaaaatatcatattctgcgttgtttattgattgatatata |
36659512 |
T |
|
| Q |
516 |
ttatattgatgcacccatgaatattctagcacttgcaggatcttggggccaaggattttgaggaagggtacatggaggatcgacacccacgtggtatgat |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
36659511 |
ttatattgatgcacccatgaatattctagcacttgcaggatcttggggccaaggattttgaggaagggtacatggaggatcgacacccacgtgg--tgat |
36659414 |
T |
|
| Q |
616 |
gtttatatcgcttaagggacaaaatgggaaaattgaggagcttgcgagaagcatgaaaggtgagat-aaaaattctcttttgagaattgtatttttgaat |
714 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
36659413 |
gtttacatcgcttaagggacaaaatgggaaaattgaggagcttgcgagaagcatgaaaggtgagataaaaaattctcttttggaaattgtatttttgaat |
36659314 |
T |
|
| Q |
715 |
gacattttttctccaaaagtgnnnnnnnaaaggatacaaaatttaaatatttattagttgtgtacgtccaaactaattttcaggtgtgagaagtttcttc |
814 |
Q |
| |
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||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36659313 |
gacattttttcaccaaaagtgtttttttaaaggatacaaaatttaaatatttattagttgtgtacgtccaaactaattttcaggtgtgaaaagtttcttc |
36659214 |
T |
|
| Q |
815 |
a-nnnnnnngctttaaatcaaaagcccaaaa |
844 |
Q |
| |
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| |||||||||||||||||||||| |
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|
| T |
36659213 |
attttttttgctttaaatcaaaagcccaaaa |
36659183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 919 - 1540
Target Start/End: Complemental strand, 36658511 - 36657882
Alignment:
| Q |
919 |
tcatctcttatgaacaagtcaaccattgatttttcgccacacatattccgagcaaatttccatattacatgtatttcaagacctttc-atttttagtatc |
1017 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36658511 |
tcatctcttatgaacaagtcaaccattgatttttcgccacacatattccgagcaaatttccatattacatgtatttcaagacctttttatttttagtatc |
36658412 |
T |
|
| Q |
1018 |
atttatcacacgttcaatacaatgactagcaaattcttaggttcggcagtgatattggttcnnnnnnnatacatatcattgacggtggtagcacttgaag |
1117 |
Q |
| |
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||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36658411 |
atttatcacacattgaatacaatgactagcaaattcttaggttcggcagtgatattggttctttttttatacatatcattgacggtggtagcacttgaag |
36658312 |
T |
|
| Q |
1118 |
atccaaatatagatgcatatgatgatgacattaaagatggcaagatgtcgttacccgaatgtaagcaa----caatgcatgtccatatgcttgaaaatca |
1213 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36658311 |
atccaaatatagatgcatatgatgatgacattaaagatggcaagatgtcgttacccgaatgtaagcaagcaacaatgcatgtccatatgcttgaaaatca |
36658212 |
T |
|
| Q |
1214 |
aatttgcagaagattcactttgccaagatgcatgctctccagcatgtaaacaattacaaggcaaaggttcnnnnnnnnatagacctaaaatgtagtgacg |
1313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36658211 |
aatttgcagaagattcactttgccaagatgcatgctctccagcatgtaaacaattacaaggcaaaggttctttattttatagacctaaaatgtagtgacg |
36658112 |
T |
|
| Q |
1314 |
atatatacctctaaatagcatatgtatattattatttagtaattattttggttaccgcaaatttctataatgaagttcttatgta---ttcnnnnnnnnn |
1410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
36658111 |
atatatacctctaaatagcatatgtatattattatttagtaattattttggttaccgcaaatttctataatgaagttcttatgtatttttttttttttct |
36658012 |
T |
|
| Q |
1411 |
catccgcaatactgtgatttctcaacaccaaaagcgatctttaaagcaaaacgtgaataagatatgtgtggtttatgatgtaagtgtagacaaacatgat |
1510 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36658011 |
catccgcaatactgtgatttctcaacaccaaaagcgatctttaaagcaaaacgtgaataagatatgtgtggtttatgatgtaagtgtagacaaacatgat |
36657912 |
T |
|
| Q |
1511 |
accatttgtctggaataatcaaactcaacc |
1540 |
Q |
| |
|
||||||||||||| |||||||||||||||| |
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|
| T |
36657911 |
accatttgtctgggataatcaaactcaacc |
36657882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 2e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 2e-28
Query Start/End: Original strand, 1177 - 1282
Target Start/End: Complemental strand, 13032395 - 13032290
Alignment:
| Q |
1177 |
tgtaagcaacaatgcatgtccatatgcttgaaaatcaaatttgcagaagattcactttgccaagatgcatgctctccagcatgtaaacaattacaaggca |
1276 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||| ||||| ||| ||||||||| ||||| || ||||||||||||||||||||||| |||||| |
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|
| T |
13032395 |
tgtaaacaacaatgcatgtctatatgcttgaaaatcaaacttgcacaagtttcactttgtcaagaagcttgctctccagcatgtaaacaattgaaaggca |
13032296 |
T |
|
| Q |
1277 |
aaggtt |
1282 |
Q |
| |
|
|||||| |
|
|
| T |
13032295 |
aaggtt |
13032290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 2e-28
Query Start/End: Original strand, 930 - 1018
Target Start/End: Complemental strand, 13032644 - 13032555
Alignment:
| Q |
930 |
gaacaagtcaaccattgatttttcgccacacatattccgagcaaatttccatattacatgtatttcaagacctt-tcatttttagtatca |
1018 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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|
| T |
13032644 |
gaacaagtcaaccattaatttttcaccacacatattccaagcaaatttccatattacatgcatttcaagaccttctcatttttagtatca |
13032555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-17
Query Start/End: Original strand, 557 - 632
Target Start/End: Complemental strand, 32079370 - 32079295
Alignment:
| Q |
557 |
cttggggccaaggattttgaggaagggtacatggaggatcgacacccacgtggtatgatgtttatatcgcttaagg |
632 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||||||| |||||| || |||||||| | ||||||||| |
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|
| T |
32079370 |
cttgggaccaaggattttgagtaagggtacatggaggatcgacactcacgtgttaggatgtttacaccgcttaagg |
32079295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 558 - 633
Target Start/End: Original strand, 22719080 - 22719155
Alignment:
| Q |
558 |
ttggggccaaggattttgaggaagggtacatggaggatcgacacccacgtggtatgatgtttatatcgcttaaggg |
633 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||| |||||||||| |||| || ||||||| ||| |||||||| |
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|
| T |
22719080 |
ttggagccaaggattttgaggaaggatacatggagaatcgacacccgcgtgctaacatgtttacatctcttaaggg |
22719155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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