View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_low_10 (Length: 631)
Name: NF19520_low_10
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_low_10 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 599; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 9 - 631
Target Start/End: Complemental strand, 30505459 - 30504837
Alignment:
| Q |
9 |
agcacagacgacaagataattatcagatttaagatccttttgaatcgtattaacgattaagataatgagatcatgatcgtcgttgaggaaaagagtaacg |
108 |
Q |
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| T |
30505459 |
agcacaaacgacaagataattatcagatttaagatccttttgaatcgtattaacgattaagataatgagatcatgatcgtcgttgaggaaaagagtaacg |
30505360 |
T |
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| Q |
109 |
gcgagataaccggtgcgttttgagggaagattatcatcgtgagtcatcttaacggcgtgaatgtaaccgaaagaagcgtcgtgaccgagcatttcaacgt |
208 |
Q |
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| T |
30505359 |
gcgagataaccggtgcgttttgagggaagattatcatcgtgagtcatcttaacggcgtgaatgtaaccgaaagaagcgtcgtgaccgagcatttcaacgt |
30505260 |
T |
|
| Q |
209 |
agagaagacgaataatatactctttcatcttgcgtttagggatatctggttcagagattcggcgttttagggtttcgatttcgcggattacgattcggtc |
308 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30505259 |
agagaagacgaatgatatactctttcatcttgcgtttagggatatctggttcagagattcggcgttttagggtttcgatttcgcggattacgattcggtc |
30505160 |
T |
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| Q |
309 |
ttcttcggctttggatcgagattcaccgattgatttgattaggtcgagaaactcctttgattgaccgaacgcgccttgtgatcccatggcgagttcgcga |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30505159 |
ttcttcggctttggatcgagattcaccgattgatttgattaggtcgagaaactcctttgattgaccgaacgcgccttgtgatcccatggccagttcgcga |
30505060 |
T |
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| Q |
409 |
ccgattgttttcagttgctccattggttgttacggaggttttggatccggtgatggatcccggaggttgttacggaggtggatctgatcggaggaattgt |
508 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30505059 |
ccgattgttttcagttgctccattggttgttacggaggttttggatccggtgatggatcccggaggttgttacggtggtggatctgatcggaggaattgt |
30504960 |
T |
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| Q |
509 |
ggttatggtgatgaatgtgatgtaagaatttgggtttggagagtgtgaaggagaaggtgatgaagagagtaaacgacgtcgtgtacgacggagaaagaaa |
608 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30504959 |
ggttatggtgatgaatgtgatgtgagaatttgggtttggagagtgtgaaggagaaggtgatgaagagagtaaacgacgtcgtgaacgacggagaaagaaa |
30504860 |
T |
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| Q |
609 |
gagaaatgaaagaaaacaaataa |
631 |
Q |
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| T |
30504859 |
gagaaatgaaagaaaacaaataa |
30504837 |
T |
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