View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_low_12 (Length: 567)
Name: NF19520_low_12
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 8e-84; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 142 - 473
Target Start/End: Complemental strand, 7488416 - 7488081
Alignment:
| Q |
142 |
aacatgtctgatagccatagtctcatgattctttataaaacaataccctatgtaacccttctctcatgtgacaacgtaacacacatcaaacccttctttt |
241 |
Q |
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|||||||||||||| | || ||||||||| ||| || |||||| |||||||||||| |||||||||||| ||| ||||| |||||||||| || |||||| |
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| T |
7488416 |
aacatgtctgatagtcctaatctcatgatccttcatgaaacaaaaccctatgtaactcttctctcatgtcacaccgtaatacacatcaaatccctctttt |
7488317 |
T |
|
| Q |
242 |
ccaacaacgtctttcatcct---ataagaatagaatcctatggtagttgcaacggtgttttctgtcttaaacgtttgtgtcggttccataaaagttgtct |
338 |
Q |
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|||||| | | || || |||||||| ||||| |||||||||||||| || ||||||||||| || |||||||| |||| ||||| |||||||| |
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| T |
7488316 |
ccaacagcaattgtcgcacttttataagaatggaatcatatggtagttgcaatggcgttttctgtctccaaggtttgtgttggtttcataagagttgtct |
7488217 |
T |
|
| Q |
339 |
cgatgagttaattatgtggaacccaacc-ctagagaggtccaccgtgttcctccgagtctctgccttgacaacgactcacgcatgtatggtttcggtgct |
437 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
7488216 |
tgatgagttaattatgtggaaccctacaactagagaggtccaccgtgttcctccgagtctctgccttgataacgactcatgcatgtatggtttcggtgcc |
7488117 |
T |
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| Q |
438 |
gatgatccaaacaacatcaacttcaaagctgtgaaa |
473 |
Q |
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| T |
7488116 |
gatgatcccaacaacatcaacttcaaagttgtgaaa |
7488081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 10 - 143
Target Start/End: Complemental strand, 7499834 - 7499702
Alignment:
| Q |
10 |
attattcttcaataacagttcttaagtttctgtggctctgaagtctgatctaattgtttatatatggcactatctgttaatacatggctggctttagaat |
109 |
Q |
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| T |
7499834 |
attattcttcaataacagttctaaagtttctgtggctctgaagtctgatctaattgtttatatat-gcactatctgttaatacatggctggttttagaat |
7499736 |
T |
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| Q |
110 |
gatgtctcagttttttatgtttcttgatcatgaa |
143 |
Q |
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| T |
7499735 |
gatgtctcagttttttatgtttctagatcatgaa |
7499702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 450 - 550
Target Start/End: Complemental strand, 7495588 - 7495488
Alignment:
| Q |
450 |
aacatcaacttcaaagctgtgaaatttcatatcaattattgctctgtgacaacgaaacattatatttccttcgcagaagtttataatctaagtactaaat |
549 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7495588 |
aacatcaacttcaaagctgtgaaatttcatatcaattattgctctgtgacaatgaaacattatatttccttcgcggaagtttataatctaagtactaaat |
7495489 |
T |
|
| Q |
550 |
t |
550 |
Q |
| |
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| |
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|
| T |
7495488 |
t |
7495488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 186 - 318
Target Start/End: Complemental strand, 7475532 - 7475400
Alignment:
| Q |
186 |
accctatgtaacccttctctcatgtgacaacgtaacacacatcaaacccttcttttccaacaacgtctttcatcctataagaatagaatcctatggtagt |
285 |
Q |
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| T |
7475532 |
accctatataacccttctctcacgtgacaacctaatgcacatcaaatcccccttttccagcaactcccatcaacctataacaattgaatcatatggtagt |
7475433 |
T |
|
| Q |
286 |
tgcaacggtgttttctgtcttaaacgtttgtgt |
318 |
Q |
| |
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| ||| |||||||||||||| ||| |||||||| |
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| T |
7475432 |
ttcaatggtgttttctgtctcaaaggtttgtgt |
7475400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 6943675 - 6943733
Alignment:
| Q |
190 |
tatgtaacccttctctcatgtgacaacgtaacacacatcaaacccttcttttccaacaa |
248 |
Q |
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||||||||||||||||||||||||||| ||| |||||||||| || |||||||||||| |
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| T |
6943675 |
tatgtaacccttctctcatgtgacaacctaatacacatcaaatcccccttttccaacaa |
6943733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 123
Target Start/End: Original strand, 8139028 - 8139134
Alignment:
| Q |
10 |
attattcttcaataacagttcttaagtttctgtggctctgaagtctgatctaattgttt-atatatggcactatctgttaatacatggctggctttagaa |
108 |
Q |
| |
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|||||||||| |||||||||| |||||||||||||||| | ||||||||||| || |||| ||||||| ||||||||||||||| |||| ||| |
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| T |
8139028 |
attattcttccgtaacagttctaaagtttctgtggctctca-------tctaattgttttatgtatg-cactatcagttaatacatggctgactttggaa |
8139119 |
T |
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| Q |
109 |
tgatgtctcagtttt |
123 |
Q |
| |
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| T |
8139120 |
ttatgtctcagtttt |
8139134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 331 - 473
Target Start/End: Complemental strand, 7475354 - 7475211
Alignment:
| Q |
331 |
agttgtctcgatgagttaattatgtggaacccaac-cctagagaggtccaccgtgttcctccgagtctctgccttgacaacgactcacgcatgtatggtt |
429 |
Q |
| |
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|||||||| |||||||||||||| ||||||||||| ||||||||||||| ||| |||| || | | |||||| || | | | ||| |||||||||| |
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| T |
7475354 |
agttgtctagatgagttaattatttggaacccaacaactagagaggtccatcgtattccccctactagctgcctcgataccaaatcatctatgtatggtt |
7475255 |
T |
|
| Q |
430 |
tcggtgctgatgatccaaacaacatcaacttcaaagctgtgaaa |
473 |
Q |
| |
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| T |
7475254 |
ttggtgcagatgatccaaacatcattgatttcaaagttgtgaaa |
7475211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 140
Target Start/End: Original strand, 8139168 - 8139198
Alignment:
| Q |
110 |
gatgtctcagttttttatgtttcttgatcat |
140 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
8139168 |
gatgtctcagttttttatgtttcttgatcat |
8139198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 473
Target Start/End: Original strand, 6943898 - 6943950
Alignment:
| Q |
421 |
tgtatggtttcggtgctgatgatccaaacaacatcaacttcaaagctgtgaaa |
473 |
Q |
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||||||||||||||||||||||| | |||| |||| | ||||||| ||||||| |
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| T |
6943898 |
tgtatggtttcggtgctgatgattccaacatcatcgatttcaaagttgtgaaa |
6943950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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