View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19520_low_13 (Length: 559)

Name: NF19520_low_13
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19520_low_13
NF19520_low_13
[»] chr4 (28 HSPs)
chr4 (10-491)||(45394317-45394782)
chr4 (358-491)||(2460848-2460981)
chr4 (424-491)||(24666832-24666899)
chr4 (454-491)||(51386457-51386494)
chr4 (415-491)||(34941503-34941579)
chr4 (303-394)||(5227887-5227978)
chr4 (434-488)||(18363643-18363697)
chr4 (417-491)||(24666130-24666204)
chr4 (434-488)||(36599231-36599285)
chr4 (424-490)||(53778395-53778461)
chr4 (450-491)||(14527582-14527623)
chr4 (447-491)||(6057002-6057046)
chr4 (447-491)||(13924794-13924838)
chr4 (447-483)||(26354235-26354271)
chr4 (447-491)||(53777822-53777866)
chr4 (436-491)||(25055110-25055165)
chr4 (448-483)||(34450824-34450859)
chr4 (448-491)||(42792776-42792819)
chr4 (448-483)||(47156642-47156677)
chr4 (448-483)||(47157383-47157418)
chr4 (448-491)||(52129422-52129465)
chr4 (420-490)||(47764077-47764147)
chr4 (450-491)||(20143280-20143321)
chr4 (450-491)||(34451443-34451484)
chr4 (450-491)||(51387131-51387172)
chr4 (456-492)||(6244526-6244562)
chr4 (451-491)||(21837390-21837430)
chr4 (447-483)||(25725811-25725847)
[»] chr5 (20 HSPs)
chr5 (174-491)||(40371893-40372207)
chr5 (9-178)||(40367216-40367385)
chr5 (384-491)||(24565574-24565681)
chr5 (384-491)||(24606610-24606717)
chr5 (451-491)||(20476123-20476163)
chr5 (447-491)||(39937909-39937953)
chr5 (453-491)||(27345928-27345966)
chr5 (450-491)||(2029053-2029094)
chr5 (450-491)||(23253492-23253533)
chr5 (447-491)||(2028338-2028382)
chr5 (447-491)||(35524123-35524167)
chr5 (447-483)||(39466894-39466930)
chr5 (447-490)||(4095877-4095920)
chr5 (441-491)||(35524874-35524924)
chr5 (454-491)||(29595604-29595641)
chr5 (450-491)||(38129849-38129890)
chr5 (454-491)||(39936256-39936293)
chr5 (451-491)||(8743108-8743148)
chr5 (447-491)||(15561411-15561455)
chr5 (451-491)||(23257320-23257360)
[»] chr2 (18 HSPs)
chr2 (211-491)||(20606287-20606559)
chr2 (207-479)||(40583763-40584019)
chr2 (9-191)||(40584072-40584256)
chr2 (9-182)||(20606615-20606788)
chr2 (305-487)||(38138589-38138770)
chr2 (417-489)||(23458597-23458669)
chr2 (450-491)||(6873523-6873564)
chr2 (450-491)||(127741-127782)
chr2 (450-483)||(20606927-20606960)
chr2 (447-491)||(7754970-7755014)
chr2 (448-491)||(18537497-18537540)
chr2 (453-491)||(29388957-29388995)
chr2 (453-483)||(44297423-44297453)
chr2 (450-491)||(10173937-10173978)
chr2 (447-491)||(127034-127078)
chr2 (455-491)||(2655730-2655766)
chr2 (447-491)||(30201991-30202035)
chr2 (447-483)||(44296869-44296905)
[»] chr7 (28 HSPs)
chr7 (242-491)||(30580636-30580884)
chr7 (211-490)||(43660150-43660425)
chr7 (9-182)||(30580960-30581133)
chr7 (9-182)||(43659920-43660094)
chr7 (384-491)||(36611434-36611541)
chr7 (434-491)||(767956-768013)
chr7 (434-491)||(46491678-46491735)
chr7 (424-491)||(767137-767204)
chr7 (425-491)||(41965758-41965824)
chr7 (448-483)||(42818557-42818592)
chr7 (425-491)||(24874559-24874625)
chr7 (417-491)||(41358312-41358386)
chr7 (450-491)||(3314956-3314997)
chr7 (450-491)||(17114146-17114187)
chr7 (450-483)||(36611560-36611593)
chr7 (438-491)||(41358965-41359018)
chr7 (415-491)||(9147103-9147179)
chr7 (447-491)||(28007158-28007202)
chr7 (448-483)||(7329072-7329107)
chr7 (456-487)||(36611750-36611781)
chr7 (424-491)||(41965113-41965180)
chr7 (447-490)||(44876937-44876980)
chr7 (441-491)||(41617193-41617243)
chr7 (420-473)||(9147838-9147891)
chr7 (450-491)||(10590299-10590340)
chr7 (454-483)||(30581276-30581305)
chr7 (454-491)||(46491011-46491048)
chr7 (451-491)||(3315470-3315510)
[»] chr6 (6 HSPs)
chr6 (417-491)||(16718967-16719041)
chr6 (415-491)||(5312969-5313045)
chr6 (420-479)||(5312254-5312313)
chr6 (424-491)||(10965231-10965298)
chr6 (447-483)||(2138486-2138522)
chr6 (447-491)||(10966383-10966427)
[»] chr1 (17 HSPs)
chr1 (424-491)||(26240851-26240918)
chr1 (447-491)||(12449315-12449359)
chr1 (450-491)||(16449556-16449597)
chr1 (450-491)||(16459130-16459171)
chr1 (417-491)||(26240115-26240189)
chr1 (445-491)||(31109240-31109286)
chr1 (445-491)||(31116685-31116731)
chr1 (450-491)||(24847784-24847825)
chr1 (450-491)||(24848432-24848473)
chr1 (448-491)||(27746162-27746205)
chr1 (453-491)||(27745557-27745595)
chr1 (441-491)||(51547593-51547643)
chr1 (451-488)||(2260857-2260894)
chr1 (454-487)||(2261553-2261586)
chr1 (451-488)||(14166914-14166951)
chr1 (450-491)||(46253627-46253668)
chr1 (447-491)||(43552995-43553039)
[»] chr8 (18 HSPs)
chr8 (417-491)||(22632323-22632397)
chr8 (441-491)||(22632965-22633015)
chr8 (447-487)||(42664000-42664040)
chr8 (420-491)||(26847098-26847169)
chr8 (450-491)||(4402293-4402334)
chr8 (450-491)||(16911052-16911093)
chr8 (450-491)||(42094010-42094051)
chr8 (447-491)||(5434033-5434077)
chr8 (447-491)||(36402202-36402246)
chr8 (424-491)||(5434749-5434816)
chr8 (450-483)||(202586-202619)
chr8 (450-483)||(317423-317456)
chr8 (450-491)||(35347666-35347707)
chr8 (450-483)||(36180696-36180729)
chr8 (448-480)||(16718381-16718413)
chr8 (447-491)||(27243447-27243491)
chr8 (447-491)||(27255022-27255066)
chr8 (447-491)||(36403028-36403072)
[»] chr3 (32 HSPs)
chr3 (450-491)||(20807938-20807979)
chr3 (450-491)||(54308454-54308495)
chr3 (447-491)||(9830573-9830617)
chr3 (447-491)||(15287568-15287612)
chr3 (447-491)||(24511995-24512039)
chr3 (450-491)||(4706962-4707003)
chr3 (450-491)||(20808613-20808654)
chr3 (450-491)||(47571197-47571238)
chr3 (450-491)||(49349677-49349718)
chr3 (450-491)||(49350276-49350317)
chr3 (420-480)||(29516525-29516585)
chr3 (450-490)||(38557237-38557277)
chr3 (415-491)||(54754292-54754368)
chr3 (420-479)||(53346472-53346531)
chr3 (434-488)||(43479501-43479555)
chr3 (417-483)||(47571912-47571978)
chr3 (450-491)||(4706278-4706319)
chr3 (450-483)||(18745376-18745409)
chr3 (457-490)||(48626127-48626160)
chr3 (434-491)||(53242667-53242724)
chr3 (450-491)||(53343862-53343903)
chr3 (450-491)||(53344747-53344788)
chr3 (450-490)||(2226706-2226746)
chr3 (447-491)||(9831265-9831309)
chr3 (447-491)||(14746042-14746086)
chr3 (424-480)||(14746882-14746938)
chr3 (445-477)||(35982513-35982545)
chr3 (447-491)||(43453440-43453484)
chr3 (447-491)||(43454164-43454208)
chr3 (450-490)||(47677523-47677563)
chr3 (447-483)||(51920723-51920759)
chr3 (420-480)||(54753589-54753649)
[»] scaffold0627 (1 HSPs)
scaffold0627 (447-483)||(6473-6509)


Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 10 - 491
Target Start/End: Original strand, 45394317 - 45394782
Alignment:
Q  10 attattctcattgaaattatgaagataaaagtttattttttaaattatcaaatcattatgtattgaatttgaatgaaatcaaggtggattgtgaatcaat 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  45394317 attattctcattgaaattatgaagataaaagtttattttttaaattatcaaatcattatgcattgaatttgaatgaaatcaatgtggattgtgaatcaat 45394416  T
Q  110 tttgttgagaggggtgtttacttacaacaaattgtaacttacatttgcttaaccaaacatggtgagaagaaacatatggaacagtcgcattgtttttcaa 209  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||    
T  45394417 tttgttgagaggggtgtttacttacaacaaattgtaactcacatttgcttaaccaaacatggtgagaagaaacatatggaacagtcgcat--tatttcaa 45394514  T
Q  210 gtccatatttccattgcacaccttcaattaatgcttaaagcattatgttgtggtgcgtcttggttaaaataatctatggcagcaaccatcttgtgcagaa 309  Q
     ||||||||||||||||||||||| | |||||||||||| ||||||||||| ||| ||||||||||||||||              ||||||||||||||    
T  45394515 atccatatttccattgcacacctttagttaatgcttaaaacattatgttgtagtgtgtcttggttaaaataa--------------catcttgtgcagaa 45394600  T
Q  310 gttttggttagaaaggaaccagatggggaagagaaaaggaaaggaacgtgattgtgtgcagcaacttaaacttgttctcatttttaattttcaacaaaat 409  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||    
T  45394601 gttttggttagaaaggaaccggatggggaagagaaaaggaaaggaacgtgattgtgtgtagcaaggtaaacttgttctcatttttaattttcaacaaaat 45394700  T
Q  410 ctaaacgttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||||||||||||||||||||||||||||||||||||| ||  |||| ||||||||||||||||||||||||||||||    
T  45394701 ctaaacgttaattaaatctaacgttattttattcatagtccatcgacgaggtacttaattgaaccctcaccctaaaatccac 45394782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 358 - 491
Target Start/End: Complemental strand, 2460981 - 2460848
Alignment:
Q  358 tgattgtgtgcagcaacttaaacttgttctcatttttaattttcaacaaaatctaaacgttaattaaatctaacgttattttattcatagtccaccggtg 457  Q
    |||||||||| |||||  |||| ||||||||||||||||||||||||||||||||| |  |||||||| |||||||| |||||||||| |||||| ||||    
T  2460981 tgattgtgtgtagcaatataaagttgttctcatttttaattttcaacaaaatctaaccactaattaaacctaacgttgttttattcatggtccactggtg 2460882  T
Q  458 agggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||| || | |||||| |||| |||||||    
T  2460881 agggacttagttcagccctcatcctagaatccac 2460848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 424 - 491
Target Start/End: Original strand, 24666832 - 24666899
Alignment:
Q  424 aatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||| |||| |||||| ||||| ||||||| | ||||||||||||||||||||||||||| |||||||    
T  24666832 aatcaaacggtatttttttcatggtccaccagggagggacttaattgaaccctcaccctataatccac 24666899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 454 - 491
Target Start/End: Complemental strand, 51386494 - 51386457
Alignment:
Q  454 ggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||||||||||||||||||||||||||||||    
T  51386494 ggtgagggacttaattgaaccctcaccctaaaatccac 51386457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 415 - 491
Target Start/End: Complemental strand, 34941579 - 34941503
Alignment:
Q  415 cgttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||| ||| |||| |||| |||||| |||||  |||||  ||||||||||||||||||||||||||||| |||||||    
T  34941579 cgttgattcaatcaaacggtattttcttcatgatccactagtgagggacttaattgaaccctcaccctagaatccac 34941503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 394
Target Start/End: Complemental strand, 5227978 - 5227887
Alignment:
Q  303 tgcagaagttttggttagaaaggaaccagatggggaagagaaaaggaaaggaacgtgattgtgtgcagcaacttaaacttgttctcattttt 394  Q
    ||||||| ||||||||||| |||||   |||||||| |||||| ||||||| || |||||||||| || ||  |||| ||||||||||||||    
T  5227978 tgcagaatttttggttagagaggaatgtgatggggacgagaaacggaaagggacatgattgtgtgtagaaatctaaaattgttctcattttt 5227887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 434 - 488
Target Start/End: Original strand, 18363643 - 18363697
Alignment:
Q  434 tattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatc 488  Q
    |||||| ||| | |||||||||||||| |||||||||||||||||||||| ||||    
T  18363643 tattttcttcgtggtccaccggtgaggaacttaattgaaccctcaccctagaatc 18363697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 491
Target Start/End: Complemental strand, 24666204 - 24666130
Alignment:
Q  417 ttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||| ||| || | ||||||  |||| || |||||||||||||||||||||| ||||||||||| |||||||    
T  24666204 ttaattagatcgaatggtatttttgtcatggttcaccggtgagggacttaattgatccctcaccctagaatccac 24666130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 434 - 488
Target Start/End: Complemental strand, 36599285 - 36599231
Alignment:
Q  434 tattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatc 488  Q
    |||||| ||| | |||||||||||||| |||||||||||||||||||||| ||||    
T  36599285 tattttcttcgtggtccaccggtgaggaacttaattgaaccctcaccctagaatc 36599231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 490
Target Start/End: Original strand, 53778395 - 53778461
Alignment:
Q  424 aatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatcca 490  Q
    ||||||||| |||||  ||| | ||||||||||||||||||||| || |||||||||||| ||||||    
T  53778395 aatctaacgatatttccttcgtggtccaccggtgagggacttaaatggaccctcaccctagaatcca 53778461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 491
Target Start/End: Original strand, 14527582 - 14527623
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||||||||||||||||| ||||||||||| |||||||    
T  14527582 caccggtgagggacttaattgatccctcaccctagaatccac 14527623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 491
Target Start/End: Original strand, 6057002 - 6057046
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||||||||||||||| | |||||||||||||| |||||||    
T  6057002 gtccaccggtgagggacttagtagaaccctcaccctagaatccac 6057046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 13924838 - 13924794
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||||||||||| |||||||| ||||||||||| |||||||    
T  13924838 gtccaccggtgagggatttaattgagccctcaccctagaatccac 13924794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 483
Target Start/End: Original strand, 26354235 - 26354271
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcacccta 483  Q
    ||||||| |||||||||||||||||||||||||||||    
T  26354235 gtccacctgtgagggacttaattgaaccctcacccta 26354271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 53777866 - 53777822
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||||| |||||||||| ||||||| ||||||||||||    
T  53777866 gtccaccggtgagagacttaattggaccctcatcctaaaatccac 53777822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 491
Target Start/End: Complemental strand, 25055165 - 25055110
Alignment:
Q  436 ttttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||| ||||| |||||||  ||||| |||||||||||||||||||||| |||||||    
T  25055165 tttttttcatggtccaccaatgaggaacttaattgaaccctcaccctagaatccac 25055110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 483
Target Start/End: Complemental strand, 34450859 - 34450824
Alignment:
Q  448 tccaccggtgagggacttaattgaaccctcacccta 483  Q
    |||||||||||||||||||||||| |||||||||||    
T  34450859 tccaccggtgagggacttaattgatccctcacccta 34450824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 491
Target Start/End: Complemental strand, 42792819 - 42792776
Alignment:
Q  448 tccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||| |||||||||||||||||| |||||||||||| |||||||    
T  42792819 tccatcggtgagggacttaattggaccctcaccctagaatccac 42792776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 483
Target Start/End: Complemental strand, 47156677 - 47156642
Alignment:
Q  448 tccaccggtgagggacttaattgaaccctcacccta 483  Q
    ||||||| ||||||||||||||||||||||||||||    
T  47156677 tccaccgatgagggacttaattgaaccctcacccta 47156642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 483
Target Start/End: Original strand, 47157383 - 47157418
Alignment:
Q  448 tccaccggtgagggacttaattgaaccctcacccta 483  Q
    ||||||||||||||| ||||||||||||||||||||    
T  47157383 tccaccggtgagggatttaattgaaccctcacccta 47157418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 491
Target Start/End: Complemental strand, 52129465 - 52129422
Alignment:
Q  448 tccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||| |||||||||||||||||||||||||| || |||||||    
T  52129465 tccaccagtgagggacttaattgaaccctcaccttagaatccac 52129422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 490
Target Start/End: Original strand, 47764077 - 47764147
Alignment:
Q  420 attaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatcca 490  Q
    ||||||||| | | ||| || ||||| |||||||||||||||| || |||||||||| |||||| ||||||    
T  47764077 attaaatcttatggtatatttttcatggtccaccggtgagggatttgattgaacccttaccctagaatcca 47764147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 491
Target Start/End: Complemental strand, 20143321 - 20143280
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||||||||| |||| ||||||||||| |||||||    
T  20143321 caccggtgagggacttagttgagccctcaccctagaatccac 20143280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 491
Target Start/End: Original strand, 34451443 - 34451484
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||| |||||||||| ||||||||||| |||||||    
T  34451443 caccggtgaggtacttaattgatccctcaccctagaatccac 34451484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 491
Target Start/End: Original strand, 51387131 - 51387172
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||||||||| ||||||| ||||||||||| |||||||    
T  51387131 caccggtgagggacgtaattgatccctcaccctataatccac 51387172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 456 - 492
Target Start/End: Complemental strand, 6244562 - 6244526
Alignment:
Q  456 tgagggacttaattgaaccctcaccctaaaatccacg 492  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  6244562 tgagggacttaattgaaccttcaccctataatccacg 6244526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 451 - 491
Target Start/End: Complemental strand, 21837430 - 21837390
Alignment:
Q  451 accggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||||||||||| ||| |||||||||||| |||||||    
T  21837430 accggtgagggacttagttggaccctcaccctagaatccac 21837390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 483
Target Start/End: Original strand, 25725811 - 25725847
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcacccta 483  Q
    ||||||||||||||||||||||||  |||||||||||    
T  25725811 gtccaccggtgagggacttaattgctccctcacccta 25725847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 174 - 491
Target Start/End: Original strand, 40371893 - 40372207
Alignment:
Q  174 agaagaaacatatggaacagtcgcattgtttttcaagtccatatttccattgcacaccttcaattaatgcttaaagcattatgttgtggtgcgtcttggt 273  Q
    ||||||||||||||||||| ||||||| |||  |||||||||||| ||||| |||||||||| |||||||||||||||||||||||| ||| ||||||||    
T  40371893 agaagaaacatatggaacaatcgcattattt--caagtccatatt-ccattacacaccttcagttaatgcttaaagcattatgttgtagtgtgtcttggt 40371989  T
Q  274 taaaataatctatggcagcaaccatcttgtgcagaagttttggttagaaaggaaccagatggggaagagaaaaggaaaggaacgtgattgtgtgcagcaa 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  40371990 taaaataatctatggcagcaaccatcttgtgcagaagttttggttagaaaggaaccagatggggaagagaaaaggaaaggaacgtgattttgtgtagcaa 40372089  T
Q  374 cttaaacttgttctcatttttaattttcaacaaaatctaaacgttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaac 473  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40372090 ggtaaacttgttctcatttttaattttcaacaaaatctaaacgttaattaaatctaacgttattttattcatagtccaccggtgaggaacttaattgaac 40372189  T
Q  474 cctcaccctaaaatccac 491  Q
    |||||||||| |||||||    
T  40372190 cctcaccctagaatccac 40372207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 40367216 - 40367385
Alignment:
Q  9 cattattctcattgaaattatgaagataaaagtttattttttaaattatcaaatcattatgtattgaatttgaatgaaatcaaggtggattgtgaatcaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  40367216 cattattctcattgaaattatgaagataaaagtttattttttaaattatcaaatcattatgcattgaatttgaatgaaatcaaggtggattgtgaatcaa 40367315  T
Q  109 ttttgttgagaggggtgtttacttacaacaaattgtaacttacatttgcttaaccaaacatggtgagaag 178  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40367316 ttttgttgagaggggtgtttacttacaacaaattgtaactcacatttgcttaaccaaacatggtgagaag 40367385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 384 - 491
Target Start/End: Complemental strand, 24565681 - 24565574
Alignment:
Q  384 ttctcatttttaattttcaacaaaatctaaacg-ttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccct 482  Q
    ||||||||||| ||||| || |||||||||||  |||||||||||||| | |||||| ||||| |||||||||||||||| |||||||||||||||||||    
T  24565681 ttctcattttttattttaaa-aaaatctaaaccattaattaaatctaatggtattttgttcatggtccaccggtgagggatttaattgaaccctcaccct 24565583  T
Q  483 aaaatccac 491  Q
    | |||||||    
T  24565582 agaatccac 24565574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 384 - 491
Target Start/End: Complemental strand, 24606717 - 24606610
Alignment:
Q  384 ttctcatttttaattttcaacaaaatctaaacg-ttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccct 482  Q
    ||||||||||| ||||| || |||||||||||  |||||||||||||| | |||||| ||||| |||||||||||||||| |||||||||||||||||||    
T  24606717 ttctcattttttattttaaa-aaaatctaaaccattaattaaatctaatggtattttgttcatggtccaccggtgagggatttaattgaaccctcaccct 24606619  T
Q  483 aaaatccac 491  Q
    | |||||||    
T  24606618 agaatccac 24606610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 451 - 491
Target Start/End: Original strand, 20476123 - 20476163
Alignment:
Q  451 accggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  20476123 accggtgagggacttaattgatccctcaccctaaaatccac 20476163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 447 - 491
Target Start/End: Original strand, 39937909 - 39937953
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||    
T  39937909 gtccaccggtgagggacttaactgaaccctcaccctagaatccac 39937953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 491
Target Start/End: Original strand, 27345928 - 27345966
Alignment:
Q  453 cggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  27345928 cggtgagggacttaattgaaccctcaccctagaatccac 27345966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 491
Target Start/End: Original strand, 2029053 - 2029094
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||||||||||||||||| ||||||||||| |||||||    
T  2029053 caccggtgagggacttaattgagccctcaccctagaatccac 2029094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 491
Target Start/End: Original strand, 23253492 - 23253533
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||||||||||||| |||||||||||| |||||||    
T  23253492 caccggtgagggacttaattggaccctcaccctagaatccac 23253533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 2028382 - 2028338
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||| ||| |||||||||| ||||||||||||||||||||||||    
T  2028382 gtccatcggcgagggacttagttgaaccctcaccctaaaatccac 2028338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 35524167 - 35524123
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||||||||||||||||||| |||| |||| |||||||    
T  35524167 gtccaccggtgagggacttaattgaactctcatcctagaatccac 35524123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 483
Target Start/End: Complemental strand, 39466930 - 39466894
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcacccta 483  Q
    |||||||||||||||||||||||| ||||||||||||    
T  39466930 gtccaccggtgagggacttaattggaccctcacccta 39466894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 447 - 490
Target Start/End: Original strand, 4095877 - 4095920
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcaccctaaaatcca 490  Q
    ||||| |||||||||| ||||||| |||||||||||||||||||    
T  4095877 gtccatcggtgagggatttaattggaccctcaccctaaaatcca 4095920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 491
Target Start/End: Original strand, 35524874 - 35524924
Alignment:
Q  441 ttcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||| |||||||||||||  |||||||||| ||||||||||| |||||||    
T  35524874 ttcatggtccaccggtgagaaacttaattgatccctcaccctagaatccac 35524924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 491
Target Start/End: Original strand, 29595604 - 29595641
Alignment:
Q  454 ggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  29595604 ggtgagggacttaattgaaccctcacgctagaatccac 29595641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 491
Target Start/End: Original strand, 38129849 - 38129890
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||||||||||||||||  |||||||| ||||||||||    
T  38129849 caccggtgagggacttaattgttccctcaccttaaaatccac 38129890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 491
Target Start/End: Complemental strand, 39936293 - 39936256
Alignment:
Q  454 ggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||||||||||||||||||| || |||||||    
T  39936293 ggtgagggacttaattgaaccctcaccttagaatccac 39936256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 451 - 491
Target Start/End: Original strand, 8743108 - 8743148
Alignment:
Q  451 accggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||||||||||||||||||| ||||| || |||||||    
T  8743108 accggtgagggacttaattgaaccttcaccttagaatccac 8743148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 15561455 - 15561411
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||||||||||||||| | || ||||||||||| |||||||    
T  15561455 gtccaccggtgagggacttagtagagccctcaccctagaatccac 15561411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 451 - 491
Target Start/End: Complemental strand, 23257360 - 23257320
Alignment:
Q  451 accggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||||||||||||||| |||||||| ||| |||||||    
T  23257360 accggtgagggacttaattggaccctcactctagaatccac 23257320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 4e-67; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 211 - 491
Target Start/End: Complemental strand, 20606559 - 20606287
Alignment:
Q  211 tccatatttccattgcacaccttcaattaatgcttaaagcattatgttgtggtgcgtcttggttaaaataatctatggcagcaaccatcttgtgcagaag 310  Q
    |||||||||||||||||||||||| ||||  ||||||| ||||||||| | ||| |||  ||||| ||||| ||||||||| |||||| ||||||||||     
T  20606559 tccatatttccattgcacaccttcgattatggcttaaatcattatgttttagtgtgtcgaggttagaataagctatggcagaaaccat-ttgtgcagaa- 20606462  T
Q  311 ttttggttagaaaggaaccagatggggaagagaaaaggaaaggaacgtgattgtgtgcagcaacttaaacttgttctcatttttaattttcaacaaaatc 410  Q
    ||||||||||||||||||       |||||||||||||||| | | || |||||||| |||||  |||| |||||||||||||| ||||| |||||||||    
T  20606461 ttttggttagaaaggaact------ggaagagaaaaggaaaaggatgtaattgtgtgtagcaatgtaaagttgttctcattttttatttttaacaaaatc 20606368  T
Q  411 taaacgttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||| | |||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||    
T  20606367 taaccattaattaaatctaacgttattttattcacagtccatcggtgagggacttaattaaaccctcaccctaaaatccac 20606287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 207 - 479
Target Start/End: Complemental strand, 40584019 - 40583763
Alignment:
Q  207 caagtccatatttccattgcacaccttcaattaatgcttaaagcattatgttgtggtgcgtcttggttaaaataatctatggcagcaaccatcttgtgca 306  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||| ||                | ||| | |||| ||| ||||||||||||    
T  40584019 caagtccatatttccattgcacaccttcaattatcgcttaaagcattatgttatgc---------------aaaatttttggccgcagccatcttgtgca 40583935  T
Q  307 gaagttttggttagaaaggaaccagatggggaagagaaaaggaaaggaacgtgattgtgtgcagcaacttaaacttgttctcatttttaattttcaacaa 406  Q
    ||| ||||||||||||||||| || |||||||||||||||||||||  |||||||||| || |||||| |||| ||||||| ||||||| ||||||||||    
T  40583934 gaatttttggttagaaaggaatcatatggggaagagaaaaggaaagcgacgtgattgtatgtagcaacgtaaagttgttct-atttttatttttcaacaa 40583836  T
Q  407 aatctaaacgttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcac 479  Q
    ||||||| |||||||||||||||| |||||||||||||  ||||| || ||| |||||||||| |||||||||    
T  40583835 aatctaaccgttaattaaatctaatgttattttattcacggtccatcgatgaaggacttaattcaaccctcac 40583763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 9 - 191
Target Start/End: Complemental strand, 40584256 - 40584072
Alignment:
Q  9 cattattctcattgaaattatgaagat-aaaagtttattttttaaattatcaaatcatt-atgtattgaatttgaatgaaatcaaggtggattgtgaatc 106  Q
    ||||||||| ||||||||||||||||| |||| ||||||||| |||||||||||||||| ||| | |||||||||||||||||| ||||| |  ||||||    
T  40584256 cattattcttattgaaattatgaagatgaaaaatttatttttaaaattatcaaatcatttatgcaatgaatttgaatgaaatcatggtgggtcatgaatc 40584157  T
Q  107 aattttgttgagaggggtgtttacttacaacaaattgtaacttacatttgcttaaccaaacatggtgagaagaaacatatggaac 191  Q
    ||||||||||||| | ||| |||||||||||||||||||||| | |||||||||||||||||||||||| ||||| |||||||||    
T  40584156 aattttgttgagacgagtggttacttacaacaaattgtaactcaaatttgcttaaccaaacatggtgaggagaaagatatggaac 40584072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 9 - 182
Target Start/End: Complemental strand, 20606788 - 20606615
Alignment:
Q  9 cattattctcattgaaattatgaagataaaagtttattttttaaattatcaaatca-ttatgtattgaatttgaatgaaatcaaggtggattgtgaatca 107  Q
    ||||||||||||||||||||||||||| || | ||  ||||||||||| ||||| | ||||| |||||||||||||  |||||||| || |  |||||||    
T  20606788 cattattctcattgaaattatgaagatgaagggtttatttttaaattaacaaattatttatgcattgaatttgaatataatcaagg-gggtcatgaatca 20606690  T
Q  108 attttgttgagaggggtgtttacttacaacaaattgtaacttacatttgcttaaccaaacatggtgagaagaaac 182  Q
    ||||||| ||||||||    ||| |  |||||||||| ||||| ||||||||||||||| |||||||| ||||||    
T  20606689 attttgtagagaggggaccatacgtgtaacaaattgttacttaaatttgcttaaccaaaaatggtgaggagaaac 20606615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 305 - 487
Target Start/End: Original strand, 38138589 - 38138770
Alignment:
Q  305 cagaagttttggttagaaaggaaccagatggggaagagaaaaggaaaggaacgtgattgtgtgcagcaacttaaacttgttctcatttttaattttcaac 404  Q
    ||||| ||||||||||| ||||| | |||||||| |||||| ||||||| || |||||||||| || ||  |||| ||||| | ||||||  |||  ||     
T  38138589 cagaatttttggttagagaggaatccgatggggaggagaaacggaaagggacatgattgtgtgtagaaatctaaagttgtttttatttttgtttt--aag 38138686  T
Q  405 aaaatctaaacg-ttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaat 487  Q
     |||||| |||  ||||||||||| || | ||||||||||||  |||||| |||||||||||||||||| ||||||| ||||||    
T  38138687 taaatctgaaccattaattaaatcaaatggtattttattcatgatccaccagtgagggacttaattgaatcctcaccttaaaat 38138770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 417 - 489
Target Start/End: Original strand, 23458597 - 23458669
Alignment:
Q  417 ttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatcc 489  Q
    ||||||||||| ||||||||||| || || ||| ||||||||||||||||||| |||||||||| || |||||    
T  23458597 ttaattaaatccaacgttatttttttaatggtctaccggtgagggacttaattaaaccctcaccgtagaatcc 23458669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 491
Target Start/End: Complemental strand, 6873564 - 6873523
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  6873564 caccggtaagggacttaattgaaccctcaccctaaaatccac 6873523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 491
Target Start/End: Original strand, 127741 - 127782
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||| |||||||||||||||||||||||| |||||||    
T  127741 caccggtgaaggacttaattgaaccctcaccctagaatccac 127782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 483
Target Start/End: Original strand, 20606927 - 20606960
Alignment:
Q  450 caccggtgagggacttaattgaaccctcacccta 483  Q
    ||||||||||||||||||||||||||||||||||    
T  20606927 caccggtgagggacttaattgaaccctcacccta 20606960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 491
Target Start/End: Original strand, 7754970 - 7755014
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||||||| |||||||||||| ||||||||||| |||||||    
T  7754970 gtccaccggtgaaggacttaattgatccctcaccctagaatccac 7755014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 491
Target Start/End: Original strand, 18537497 - 18537540
Alignment:
Q  448 tccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||||||||||||||||||||||| | || |||||||    
T  18537497 tccaccggtgagggacttaattgaaccctcatcatagaatccac 18537540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 491
Target Start/End: Original strand, 29388957 - 29388995
Alignment:
Q  453 cggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||||||||||| || |||||||||||||||||||    
T  29388957 cggtgagggacttaatagagccctcaccctaaaatccac 29388995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 483
Target Start/End: Original strand, 44297423 - 44297453
Alignment:
Q  453 cggtgagggacttaattgaaccctcacccta 483  Q
    |||||||||||||||||||||||||||||||    
T  44297423 cggtgagggacttaattgaaccctcacccta 44297453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 491
Target Start/End: Complemental strand, 10173978 - 10173937
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||||||||||  |||||||||||||| |||||||    
T  10173978 caccggtgagggacttaacagaaccctcaccctagaatccac 10173937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 127078 - 127034
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||| | ||||||||||| |||||||||||||||| |||||||    
T  127078 gtccactgatgagggacttagttgaaccctcaccctagaatccac 127034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 455 - 491
Target Start/End: Complemental strand, 2655766 - 2655730
Alignment:
Q  455 gtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  2655766 gtgagggatttaattgaaccctcaccttaaaatccac 2655730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 491
Target Start/End: Original strand, 30201991 - 30202035
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||||||||||||||||  |||||||| || |||||||    
T  30201991 gtccaccggtgagggacttaattgctccctcaccttagaatccac 30202035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 483
Target Start/End: Complemental strand, 44296905 - 44296869
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcacccta 483  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  44296905 gtccaccagtgagggacttaattggaccctcacccta 44296869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 242 - 491
Target Start/End: Complemental strand, 30580884 - 30580636
Alignment:
Q  242 gcttaaagcattatgttgtggtgcgtcttggttaaaataatctatggcagcaaccatcttgtgcagaagttttggttagaaaggaaccagatggggaaga 341  Q
    ||||||| ||||||||| | ||| |||  ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||       ||||||    
T  30580884 gcttaaatcattatgttttagtgtgtcgaggttagaataatctatggcagcaaccatcttgtgcagaa-ttttggttagaaaggaact------ggaaga 30580792  T
Q  342 gaaaaggaaaggaacgtgattgtgtgcagcaacttaaacttgttctcatttttaattttcaacaaaatctaaacgttaattaaatctaacgttattttat 441  Q
    |||||||||| | |||| |||||||| |||||  |||| |||||||||||||| ||||| |||||||||||| | |||||||||||||||||||||||||    
T  30580791 gaaaaggaaaaggacgtaattgtgtgtagcaatataaagttgttctcattttttatttttaacaaaatctaaccattaattaaatctaacgttattttat 30580692  T
Q  442 tcatagtccac------cggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||||||      ||||||| ||||||||| ||||||||||||| |||||||    
T  30580691 tcatagtccaccggtaacggtgagagacttaattaaaccctcaccctagaatccac 30580636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 211 - 490
Target Start/End: Original strand, 43660150 - 43660425
Alignment:
Q  211 tccatatttccattgcacaccttcaattaatgcttaaagcattat---gttgtggtgcgtcttggttaaaataatctatggcagcaaccatcttgtgcag 307  Q
    |||||||||||||||||||||||| ||||| ||||||| ||||||   ||| | ||| |||  ||||| ||||||||||| ||| |||||||||||||||    
T  43660150 tccatatttccattgcacaccttctattaaggcttaaatcattattatgttttagtgtgtcgaggttagaataatctatgacagaaaccatcttgtgcag 43660249  T
Q  308 aagttttggttagaaaggaaccagatggggaagagaaaaggaaaggaacgtgattgtgtgcagcaacttaaacttgttctcatttttaattttcaacaaa 407  Q
    || ||||||||||||||||||      ||||||||||||||||| | |||| |||||||| | |||  |||| ||||||| |||||| ||||| ||||||    
T  43660250 aa-ttttggttagaaaggaact-----gggaagagaaaaggaaaaggacgtaattgtgtgtaccaatgtaaagttgttct-attttttatttttaacaaa 43660342  T
Q  408 atctaaacgttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatcca 490  Q
    |||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||  | || ||||||| ||||||    
T  43660343 atctaaccattaattaaatctaacgttattttattcatggtccaccggtgagggacttaattataaccacaccctagaatcca 43660425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 9 - 182
Target Start/End: Complemental strand, 30581133 - 30580960
Alignment:
Q  9 cattattctcattgaaattatgaagataaaagtttattttttaaattatcaaatca-ttatgtattgaatttgaatgaaatcaaggtggattgtgaatca 107  Q
    ||||||||||||||||||||||||||| || | ||  ||||||||||| ||||| | ||||| |||||||||||||  |||||||| || |  |||||||    
T  30581133 cattattctcattgaaattatgaagatgaagggtttatttttaaattaacaaattatttatgcattgaatttgaatataatcaagg-gggtcatgaatca 30581035  T
Q  108 attttgttgagaggggtgtttacttacaacaaattgtaacttacatttgcttaaccaaacatggtgagaagaaac 182  Q
    ||||||| ||||||||    ||| |  |||||||||| ||||| ||||||||||||||| |||||||| ||||||    
T  30581034 attttgtagagaggggaacatacgtgtaacaaattgttacttaaatttgcttaaccaaaaatggtgaggagaaac 30580960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 9 - 182
Target Start/End: Original strand, 43659920 - 43660094
Alignment:
Q  9 cattattctcattgaaattatgaagataaaagtttattttttaaattatcaaatca--ttatgtattgaatttgaatgaaatcaaggtggattgtgaatc 106  Q
    ||||||||||||||||||||||||||| || | ||  ||||||||||||||||| |  ||||| |||||||||||||  |||||||| |  |  ||||||    
T  43659920 cattattctcattgaaattatgaagatgaagggtttatttttaaattatcaaattattttatgcattgaatttgaatataatcaagg-gagtcatgaatc 43660018  T
Q  107 aattttgttgagaggggtgtttacttacaacaaattgtaacttacatttgcttaaccaaacatggtgagaagaaac 182  Q
    |||||||| ||||||||    ||| |  |||||||||| ||||| ||||||||||||||| |||||||| ||||||    
T  43660019 aattttgtagagaggggaccatacgtgtaacaaattgttacttaaatttgcttaaccaaaaatggtgaggagaaac 43660094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 384 - 491
Target Start/End: Original strand, 36611434 - 36611541
Alignment:
Q  384 ttctcatttttaattttcaacaaaatctaaacg-ttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccct 482  Q
    ||||||||||| ||||| || |||||||||||  |||||||||||||| | |||||| ||||| ||||||||||||| || |||||||||||||||||||    
T  36611434 ttctcattttttattttaaa-aaaatctaaaccattaattaaatctaatggtattttgttcatggtccaccggtgagagatttaattgaaccctcaccct 36611532  T
Q  483 aaaatccac 491  Q
    | |||||||    
T  36611533 agaatccac 36611541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 434 - 491
Target Start/End: Original strand, 767956 - 768013
Alignment:
Q  434 tattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||| ||| | |||||||||||||||||||||||| ||||||||||||||||||||    
T  767956 tatttttttcgtggtccaccggtgagggacttaattggaccctcaccctaaaatccac 768013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 434 - 491
Target Start/End: Original strand, 46491678 - 46491735
Alignment:
Q  434 tattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||| || ||||||||||||||||||||||| |||||||||||||||| |||||||    
T  46491678 tatttttttgatagtccaccggtgagggacttagttgaaccctcaccctagaatccac 46491735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 424 - 491
Target Start/End: Complemental strand, 767204 - 767137
Alignment:
Q  424 aatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||| | |||| |||||  ||||||||||||||||||||||| |||||||||||| |||||||    
T  767204 aatctaacggtgtttttttcatgatccaccggtgagggacttaattggaccctcaccctagaatccac 767137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 425 - 491
Target Start/End: Original strand, 41965758 - 41965824
Alignment:
Q  425 atctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||| |||||  ||| | |||||||||||||||||||||||| |||||||||||| |||||||    
T  41965758 atctaacggtatttccttcgtggtccaccggtgagggacttaattggaccctcaccctagaatccac 41965824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 448 - 483
Target Start/End: Original strand, 42818557 - 42818592
Alignment:
Q  448 tccaccggtgagggacttaattgaaccctcacccta 483  Q
    ||||||||||||||||||||||||||||||||||||    
T  42818557 tccaccggtgagggacttaattgaaccctcacccta 42818592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 425 - 491
Target Start/End: Original strand, 24874559 - 24874625
Alignment:
Q  425 atctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||| ||||||  || | |||||||| |||||||| ||||||||||||||||||| |||||||    
T  24874559 atctaacggtatttttctcgtggtccaccgatgagggacctaattgaaccctcaccctagaatccac 24874625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 491
Target Start/End: Complemental strand, 41358386 - 41358312
Alignment:
Q  417 ttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||| |||| |||  |||||||||||| ||||| ||||||||||||||||||| |||||| || | |||||||    
T  41358386 ttaatttaatccaaccatattttattcatggtccatcggtgagggacttaattgatccctcatccaagaatccac 41358312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 491
Target Start/End: Complemental strand, 3314997 - 3314956
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||||||||||||||||||||||| || |||||||    
T  3314997 caccggtgagggacttaattgaaccctcaccgtagaatccac 3314956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 491
Target Start/End: Complemental strand, 17114187 - 17114146
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||| |||||||||||||||||||||||||||| |||||||    
T  17114187 caccgatgagggacttaattgaaccctcaccctagaatccac 17114146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 483
Target Start/End: Complemental strand, 36611593 - 36611560
Alignment:
Q  450 caccggtgagggacttaattgaaccctcacccta 483  Q
    ||||||||||||||||||||||||||||||||||    
T  36611593 caccggtgagggacttaattgaaccctcacccta 36611560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 438 - 491
Target Start/End: Original strand, 41358965 - 41359018
Alignment:
Q  438 ttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||| |||||| ||||| |||||||||||| ||||||||||| |||||||    
T  41358965 ttattcatggtccactggtgatggacttaattgatccctcaccctagaatccac 41359018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 491
Target Start/End: Complemental strand, 9147179 - 9147103
Alignment:
Q  415 cgttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||||||||||| | |||||| |||||  |||||| ||||||||| || ||||||||||| | || |||||||    
T  9147179 cgttaattaaatctaagggtattttgttcatgttccaccagtgagggacctagttgaaccctcatcttagaatccac 9147103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 28007202 - 28007158
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||    
T  28007202 gtccaccggtgagggacttaattgctccctcaccctagaatccac 28007158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 483
Target Start/End: Original strand, 7329072 - 7329107
Alignment:
Q  448 tccaccggtgagggacttaattgaaccctcacccta 483  Q
    |||||| |||||||||||||||||||||||||||||    
T  7329072 tccaccagtgagggacttaattgaaccctcacccta 7329107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 456 - 487
Target Start/End: Original strand, 36611750 - 36611781
Alignment:
Q  456 tgagggacttaattgaaccctcaccctaaaat 487  Q
    ||||||||||||||||||||||||||||||||    
T  36611750 tgagggacttaattgaaccctcaccctaaaat 36611781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 491
Target Start/End: Complemental strand, 41965180 - 41965113
Alignment:
Q  424 aatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||| |||||  ||| | |||||||  ||||||||||||||| |||||||||||| |||||||    
T  41965180 aatctaacggtatttccttcgtggtccaccaatgagggacttaattggaccctcaccctagaatccac 41965113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 447 - 490
Target Start/End: Original strand, 44876937 - 44876980
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcaccctaaaatcca 490  Q
    ||||| ||||||||||||||||||| ||||||||||| ||||||    
T  44876937 gtccatcggtgagggacttaattgatccctcaccctagaatcca 44876980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 491
Target Start/End: Complemental strand, 41617243 - 41617193
Alignment:
Q  441 ttcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||| ||||||||||||||||||||||||| | ||||| ||| |||||||    
T  41617243 ttcatggtccaccggtgagggacttaattgatcactcactctagaatccac 41617193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 473
Target Start/End: Original strand, 9147838 - 9147891
Alignment:
Q  420 attaaatctaacgttattttattcatagtccaccggtgagggacttaattgaac 473  Q
    |||||||| |||||||||||  | || | |||||||||||||||||||||||||    
T  9147838 attaaatccaacgttatttttctaatggaccaccggtgagggacttaattgaac 9147891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 491
Target Start/End: Complemental strand, 10590340 - 10590299
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||| |||||||||||||||||| ||||||||| |||||||    
T  10590340 caccgatgagggacttaattgaactctcaccctagaatccac 10590299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 483
Target Start/End: Original strand, 30581276 - 30581305
Alignment:
Q  454 ggtgagggacttaattgaaccctcacccta 483  Q
    ||||||||||||||||||||||||||||||    
T  30581276 ggtgagggacttaattgaaccctcacccta 30581305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 491
Target Start/End: Complemental strand, 46491048 - 46491011
Alignment:
Q  454 ggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  46491048 ggtgatggacttaattgaaccctcaccctacaatccac 46491011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 451 - 491
Target Start/End: Original strand, 3315470 - 3315510
Alignment:
Q  451 accggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||||||||||||| |||||||| || |||||||    
T  3315470 accggtgagggacttaattgagccctcaccttagaatccac 3315510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 6e-20; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 417 - 491
Target Start/End: Original strand, 16718967 - 16719041
Alignment:
Q  417 ttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||||||||||| |||||| ||||| ||||||||||||||||||||||||| || |||||||| |||||||    
T  16718967 ttaattaaatctaacgatattttgttcatggtccaccggtgagggacttaattgatccgtcaccctagaatccac 16719041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 491
Target Start/End: Original strand, 5312969 - 5313045
Alignment:
Q  415 cgttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||||||| ||| | |||||| |||||  ||||||||||| |||| || ||||||||||| | ||||||||||    
T  5312969 cgttaattaaatttaagggtattttgttcatgttccaccggtgaaggacctagttgaaccctcatcttaaaatccac 5313045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 479
Target Start/End: Complemental strand, 5312313 - 5312254
Alignment:
Q  420 attaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcac 479  Q
    |||||||| |||||||||||  | || | |||| ||||||||||||||||||||||||||    
T  5312313 attaaatccaacgttatttttctaatggaccactggtgagggacttaattgaaccctcac 5312254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 491
Target Start/End: Complemental strand, 10965298 - 10965231
Alignment:
Q  424 aatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||| | ||||||  |||| |||||||| |||| |||||||||| ||| ||||||||||||||||    
T  10965298 aatctaatggtatttttctcatggtccaccgatgagagacttaattggaccttcaccctaaaatccac 10965231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 483
Target Start/End: Complemental strand, 2138522 - 2138486
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcacccta 483  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  2138522 gtccaccggtgagggacctaattggaccctcacccta 2138486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 491
Target Start/End: Original strand, 10966383 - 10966427
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||||||||| |||||| ||| |||||||| |||||||    
T  10966383 gtccaccggtgagggacctaattggaccttcaccctagaatccac 10966427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 424 - 491
Target Start/End: Original strand, 26240851 - 26240918
Alignment:
Q  424 aatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||| |||| |||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  26240851 aatcaaacggtattttcttcatggtccaccggtgagggacttaattgaaccctcaccctagaatccac 26240918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 447 - 491
Target Start/End: Original strand, 12449315 - 12449359
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  12449315 gtccaccggtgagggacttaattgatccctcaccctaaaatccac 12449359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 491
Target Start/End: Complemental strand, 16449597 - 16449556
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  16449597 caccggtgagggacttaattgaaccctcaccctagaatccac 16449556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 491
Target Start/End: Complemental strand, 16459171 - 16459130
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  16459171 caccggtgagggacttaattgaaccctcaccctagaatccac 16459130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 491
Target Start/End: Complemental strand, 26240189 - 26240115
Alignment:
Q  417 ttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||| ||| || | ||||||  |||| || |||||||||||||||||||||| ||||||||||| |||||||    
T  26240189 ttaattagatcgaagggtatttttgtcatggttcaccggtgagggacttaattgatccctcaccctagaatccac 26240115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 491
Target Start/End: Complemental strand, 31109286 - 31109240
Alignment:
Q  445 tagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||||||||||| |||||| |||||||||||| |||||||    
T  31109286 tagtccaccggtgagggacctaattggaccctcaccctagaatccac 31109240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 491
Target Start/End: Original strand, 31116685 - 31116731
Alignment:
Q  445 tagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||||||||||| |||||| |||||||||||| |||||||    
T  31116685 tagtccaccggtgagggacctaattggaccctcaccctagaatccac 31116731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 491
Target Start/End: Complemental strand, 24847825 - 24847784
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||||||||||| |||||||||||||| |||||||    
T  24847825 caccggtgagggacttaatagaaccctcaccctagaatccac 24847784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 491
Target Start/End: Original strand, 24848432 - 24848473
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||||||||||| |||||||||||||| |||||||    
T  24848432 caccggtgagggacttaatagaaccctcaccctagaatccac 24848473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 491
Target Start/End: Original strand, 27746162 - 27746205
Alignment:
Q  448 tccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||| |||||||||||||||||||||||||| ||| |||||||    
T  27746162 tccactggtgagggacttaattgaaccctcacgctagaatccac 27746205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 491
Target Start/End: Complemental strand, 27745595 - 27745557
Alignment:
Q  453 cggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||||||||||||||||||||||| || |||||||    
T  27745595 cggtgagggacttaattgaaccctcaccttagaatccac 27745557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 491
Target Start/End: Complemental strand, 51547643 - 51547593
Alignment:
Q  441 ttcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||| |||||||||| |||||||||||| |||| |||||||| |||||||    
T  51547643 ttcatggtccaccggtaagggacttaattaaaccatcaccctagaatccac 51547593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 488
Target Start/End: Complemental strand, 2260894 - 2260857
Alignment:
Q  451 accggtgagggacttaattgaaccctcaccctaaaatc 488  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  2260894 accggtgagggacttgattgaaccctcaccctagaatc 2260857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 487
Target Start/End: Original strand, 2261553 - 2261586
Alignment:
Q  454 ggtgagggacttaattgaaccctcaccctaaaat 487  Q
    |||||||| |||||||||||||||||||||||||    
T  2261553 ggtgaggggcttaattgaaccctcaccctaaaat 2261586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 488
Target Start/End: Original strand, 14166914 - 14166951
Alignment:
Q  451 accggtgagggacttaattgaaccctcaccctaaaatc 488  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  14166914 accggtgagggacttaattgagccctcaccctagaatc 14166951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 491
Target Start/End: Complemental strand, 46253668 - 46253627
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||| |||||| ||||| |||||||||||||||||||    
T  46253668 caccggtgaaggacttgattgatccctcaccctaaaatccac 46253627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 491
Target Start/End: Original strand, 43552995 - 43553039
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||| |||||| |||||||||||| ||||||||||| |||||||    
T  43552995 gtccatcggtgaaggacttaattgatccctcaccctataatccac 43553039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 417 - 491
Target Start/End: Complemental strand, 22632397 - 22632323
Alignment:
Q  417 ttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||||||||||| | || | ||||| ||||||||||||||||||||||||| ||||||||||| |||||||    
T  22632397 ttaattaaatctaacggttttattttcatggtccaccggtgagggacttaattgatccctcaccctagaatccac 22632323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 441 - 491
Target Start/End: Original strand, 22632965 - 22633015
Alignment:
Q  441 ttcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||| ||||||||||||||||||||||||| ||||||||||| |||||||    
T  22632965 ttcatggtccaccggtgagggacttaattgatccctcaccctagaatccac 22633015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 447 - 487
Target Start/End: Original strand, 42664000 - 42664040
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcaccctaaaat 487  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  42664000 gtccaccagtgagggacttaattgaaccctcaccctaaaat 42664040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 420 - 491
Target Start/End: Complemental strand, 26847169 - 26847098
Alignment:
Q  420 attaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||| | |||||| | | | || ||||||||||||||||||||| |||||||||||| |||||||    
T  26847169 attaaatctaatggtattttttccgtggttcaccggtgagggacttaattggaccctcaccctagaatccac 26847098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 491
Target Start/End: Original strand, 4402293 - 4402334
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||||||||||| |||||||||||||| |||||||    
T  4402293 caccggtgagggacttaatagaaccctcaccctagaatccac 4402334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 491
Target Start/End: Original strand, 16911052 - 16911093
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||||||||||||||||| ||||||||||| |||||||    
T  16911052 caccggtgagggacttaattgagccctcaccctagaatccac 16911093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 491
Target Start/End: Complemental strand, 42094051 - 42094010
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||||||||||||||||| ||||||||||| |||||||    
T  42094051 caccggtgagggacttaattgatccctcaccctagaatccac 42094010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 5434077 - 5434033
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||||||| ||||||||||| |||||||||||| |||||||    
T  5434077 gtccaccggtgaaggacttaattggaccctcaccctagaatccac 5434033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 36402246 - 36402202
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||||    
T  36402246 gtccaccggtgtgggacctaattggaccctcaccctaaaatccac 36402202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 491
Target Start/End: Original strand, 5434749 - 5434816
Alignment:
Q  424 aatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||| |||||  ||||| |||||||| ||||||||||||||| || ||||| ||| |||||||    
T  5434749 aatctaacggtatttccttcatggtccaccgatgagggacttaattggactctcactctagaatccac 5434816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 483
Target Start/End: Complemental strand, 202619 - 202586
Alignment:
Q  450 caccggtgagggacttaattgaaccctcacccta 483  Q
    ||||||||||||||||||||||||||||| ||||    
T  202619 caccggtgagggacttaattgaaccctcatccta 202586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 483
Target Start/End: Complemental strand, 317456 - 317423
Alignment:
Q  450 caccggtgagggacttaattgaaccctcacccta 483  Q
    ||||||||||||||||||||||||||||| ||||    
T  317456 caccggtgagggacttaattgaaccctcatccta 317423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 491
Target Start/End: Complemental strand, 35347707 - 35347666
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||| ||||||||||| ||||||||| ||||||||||||    
T  35347707 caccggtaagggacttaatagaaccctcatcctaaaatccac 35347666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 483
Target Start/End: Complemental strand, 36180729 - 36180696
Alignment:
Q  450 caccggtgagggacttaattgaaccctcacccta 483  Q
    |||||||||||||||||||| |||||||||||||    
T  36180729 caccggtgagggacttaattaaaccctcacccta 36180696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 480
Target Start/End: Original strand, 16718381 - 16718413
Alignment:
Q  448 tccaccggtgagggacttaattgaaccctcacc 480  Q
    |||||||||||||||||||||||| ||||||||    
T  16718381 tccaccggtgagggacttaattgagccctcacc 16718413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 27243491 - 27243447
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||||||||||||||||| ||||| || || |||||||    
T  27243491 gtccaccggtgagggacttaattgatccctcgccttataatccac 27243447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 27255066 - 27255022
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||||||||||||||||| ||||| || || |||||||    
T  27255066 gtccaccggtgagggacttaattgatccctcgccttataatccac 27255022  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 491
Target Start/End: Original strand, 36403028 - 36403072
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||||||||| |||||| |||||||| ||| |||||||    
T  36403028 gtccaccggtgagggacctaattggaccctcactctagaatccac 36403072  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 491
Target Start/End: Complemental strand, 20807979 - 20807938
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  20807979 caccggtgagggacttaattgaaccctcaccctagaatccac 20807938  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 491
Target Start/End: Complemental strand, 54308495 - 54308454
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  54308495 caccggtgagggacttaattgaaccctcaccctagaatccac 54308454  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 9830617 - 9830573
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||||||||||||||||||||||||||| | |||||||    
T  9830617 gtccaccggtgagggacttaattgaaccctcacccgagaatccac 9830573  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 15287612 - 15287568
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||||||||||||||||||| |||||||||||| |||||||    
T  15287612 gtccaccggtgagggacttaattggaccctcaccctagaatccac 15287568  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 24512039 - 24511995
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||||||||||||||||  |||||||||||||||||||    
T  24512039 gtccaccggtgagggacttaattgctccctcaccctaaaatccac 24511995  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 491
Target Start/End: Original strand, 4706962 - 4707003
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||||||||||| |||||||||||||| |||||||    
T  4706962 caccggtgagggacttaatagaaccctcaccctagaatccac 4707003  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 491
Target Start/End: Original strand, 20808613 - 20808654
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||||||||| |||||||||||||||| |||||||    
T  20808613 caccggtgagggacttacttgaaccctcaccctagaatccac 20808654  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 491
Target Start/End: Complemental strand, 47571238 - 47571197
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||||||||||||||||| ||||||||||| |||||||    
T  47571238 caccggtgagggacttaattgatccctcaccctagaatccac 47571197  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 491
Target Start/End: Complemental strand, 49349718 - 49349677
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||||||||||||||||| ||||||||||| |||||||    
T  49349718 caccggtgagggacttaattgatccctcaccctagaatccac 49349677  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 491
Target Start/End: Original strand, 49350276 - 49350317
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||| ||||||||||||||||||||||||||| |||||||    
T  49350276 caccggcgagggacttaattgaaccctcaccctagaatccac 49350317  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 480
Target Start/End: Original strand, 29516525 - 29516585
Alignment:
Q  420 attaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcacc 480  Q
    |||||||| ||| |||||||  | || | ||||||||||||||||||||||||||||||||    
T  29516525 attaaatccaacattatttttctaatggaccaccggtgagggacttaattgaaccctcacc 29516585  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 490
Target Start/End: Original strand, 38557237 - 38557277
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatcca 490  Q
    ||||||||||||||||||| || ||||||||||||||||||    
T  38557237 caccggtgagggacttaatagagccctcaccctaaaatcca 38557277  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 491
Target Start/End: Original strand, 54754292 - 54754368
Alignment:
Q  415 cgttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||||||| ||| | |||||| |||||  ||||||||||| |||| || ||||||||||| | ||||||||||    
T  54754292 cgttaattaaatttaagggtattttgttcatgttccaccggtgaaggacctagttgaaccctcatcttaaaatccac 54754368  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 479
Target Start/End: Original strand, 53346472 - 53346531
Alignment:
Q  420 attaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcac 479  Q
    |||||||| ||| |||||||  | || | |||||||||||||||||||||||||||||||    
T  53346472 attaaatccaacattatttttctaatggaccaccggtgagggacttaattgaaccctcac 53346531  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 488
Target Start/End: Original strand, 43479501 - 43479555
Alignment:
Q  434 tattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatc 488  Q
    |||||| ||||| ||||| || |||| ||||||||||||||||||||||| ||||    
T  43479501 tattttcttcatggtccatcgatgagagacttaattgaaccctcaccctagaatc 43479555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 483
Target Start/End: Original strand, 47571912 - 47571978
Alignment:
Q  417 ttaattaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcacccta 483  Q
    ||||||||||| |||  || ||| |||||  | |||||||||||||||||||||| |||||||||||    
T  47571912 ttaattaaatccaactgtaatttcttcatgtttcaccggtgagggacttaattgatccctcacccta 47571978  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 491
Target Start/End: Complemental strand, 4706319 - 4706278
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||| ||||||| || |||||||||||||||||||    
T  4706319 caccggtgaggtacttaatagagccctcaccctaaaatccac 4706278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 483
Target Start/End: Original strand, 18745376 - 18745409
Alignment:
Q  450 caccggtgagggacttaattgaaccctcacccta 483  Q
    |||||||||||||||| |||||||||||||||||    
T  18745376 caccggtgagggacttgattgaaccctcacccta 18745409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 490
Target Start/End: Original strand, 48626127 - 48626160
Alignment:
Q  457 gagggacttaattgaaccctcaccctaaaatcca 490  Q
    ||||||||||||||||||||||||||| ||||||    
T  48626127 gagggacttaattgaaccctcaccctagaatcca 48626160  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 491
Target Start/End: Complemental strand, 53242724 - 53242667
Alignment:
Q  434 tattttattcatagtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||| ||| | |||||||| ||||||||||||||||  |||||||||| |||||||    
T  53242724 tattttcttcgtggtccaccgatgagggacttaattgattcctcaccctataatccac 53242667  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 491
Target Start/End: Original strand, 53343862 - 53343903
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||||||||||  |||||||||||||||| |||||||    
T  53343862 caccggtgagggacttgtttgaaccctcaccctagaatccac 53343903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 491
Target Start/End: Original strand, 53344747 - 53344788
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||||||||||||| ||||| ||||||||||| |||||||    
T  53344747 caccggtgagggacttgattgatccctcaccctagaatccac 53344788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 490
Target Start/End: Original strand, 2226706 - 2226746
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatcca 490  Q
    |||| |||||||| |||||||||||||||||||| ||||||    
T  2226706 cacctgtgagggaattaattgaaccctcaccctagaatcca 2226746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 491
Target Start/End: Original strand, 9831265 - 9831309
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||| |||||||||||||||| |||||||||| | |||||||    
T  9831265 gtccaccagtgagggacttaattggaccctcaccccagaatccac 9831309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 14746086 - 14746042
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||||||| |||||| ||||||| |||||||||||| |||||||    
T  14746086 gtccaccggggagggatttaattggaccctcaccctagaatccac 14746042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 480
Target Start/End: Original strand, 14746882 - 14746938
Alignment:
Q  424 aatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcacc 480  Q
    ||||||||| | |||| ||| | |||||||| ||||||||||||||| |||||||||    
T  14746882 aatctaacggtgtttttttcgtggtccaccgatgagggacttaattggaccctcacc 14746938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 445 - 477
Target Start/End: Complemental strand, 35982545 - 35982513
Alignment:
Q  445 tagtccaccggtgagggacttaattgaaccctc 477  Q
    |||||| ||||||||||||||||||||||||||    
T  35982545 tagtccgccggtgagggacttaattgaaccctc 35982513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 43453484 - 43453440
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    ||||| |||||||||| ||||||| |||||||||||| |||||||    
T  43453484 gtccagcggtgagggatttaattggaccctcaccctagaatccac 43453440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 491
Target Start/End: Original strand, 43454164 - 43454208
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcaccctaaaatccac 491  Q
    |||||| |||||||||| |||||| |||||||||||| |||||||    
T  43454164 gtccacaggtgagggacctaattggaccctcaccctagaatccac 43454208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 490
Target Start/End: Complemental strand, 47677563 - 47677523
Alignment:
Q  450 caccggtgagggacttaattgaaccctcaccctaaaatcca 490  Q
    |||| |||||||||||||||||||||||| |||| ||||||    
T  47677563 caccagtgagggacttaattgaaccctcatcctagaatcca 47677523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 483
Target Start/End: Complemental strand, 51920759 - 51920723
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcacccta 483  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  51920759 gtccatcggtgagggacttaattggaccctcacccta 51920723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 480
Target Start/End: Complemental strand, 54753649 - 54753589
Alignment:
Q  420 attaaatctaacgttattttattcatagtccaccggtgagggacttaattgaaccctcacc 480  Q
    |||||||| |||||||||||  | ||   |||| |||||||||||||||||||||||||||    
T  54753649 attaaatccaacgttatttttctaatgaaccactggtgagggacttaattgaaccctcacc 54753589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 483
Target Start/End: Complemental strand, 6509 - 6473
Alignment:
Q  447 gtccaccggtgagggacttaattgaaccctcacccta 483  Q
    ||||| |||||||||||||||||||||||||||||||    
T  6509 gtccatcggtgagggacttaattgaaccctcacccta 6473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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