View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_low_14 (Length: 532)
Name: NF19520_low_14
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 26 - 520
Target Start/End: Original strand, 13021159 - 13021655
Alignment:
| Q |
26 |
aaaggtatgtatatacttaaagtgatagtgtattggtgaaaattctcattgaatcttatttttgccgatgatgaatgaatagtatagttgtatagatcgg |
125 |
Q |
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| T |
13021159 |
aaaggtatgtatatacttaaagtgatagtgtattggtgaaaattctcattgaatcttatttttgccgatgatgaatgaatagtatagttgtatagatcgg |
13021258 |
T |
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| Q |
126 |
tatttctgattttatgctgaaaacttttgttgaattttactttcctactgtccaaaaatcaaacctggatcatatacagctgcagtatggcgtcgcagct |
225 |
Q |
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| T |
13021259 |
tatttctgattctatgctgaaaacttttgttgaattttactatcctactgtccaaaaatcatacctggatcatatacagctgcagtatggcgtcgtagct |
13021358 |
T |
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| Q |
226 |
gtaggaaccatataatttagagataggaactttctatttctaacagtccctatagttcccctcnnnnnnnnnnnnnnnncagtccctatagttgttgcac |
325 |
Q |
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| T |
13021359 |
gtaggaaccgtataatttagagaaaggaactttctatttctaacagtccatatagttcccctcaaaaaaaataaaaaaactgtccctatagttgttgcac |
13021458 |
T |
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| Q |
326 |
taatgatcaaatttcccaaaaatcagtgttaccgacatcaagaagttggtattgttgaatttaaaagatctgcaattcatgtttggag--tttttatttg |
423 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
13021459 |
taatgatcaaatttcccaaaaatcagtgttactgacatcaagaagttggtatcgttgaatttaaaagatctgcaattcatgtttggagtttttttatttg |
13021558 |
T |
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| Q |
424 |
gaaattggaaattcaggtccaagatgtgattgatacatttgaatttaaacctattgttatgctgatgaatttggttttcctgatggcattgtacctt |
520 |
Q |
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| T |
13021559 |
gaaattgaaaattcaggtccaagatgtgattgatacatttgaatttaaaactattgttatgctgatgaatttggttttcctgatggcattgtacctt |
13021655 |
T |
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