View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_low_15 (Length: 528)
Name: NF19520_low_15
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 22 - 516
Target Start/End: Complemental strand, 12328924 - 12328430
Alignment:
| Q |
22 |
agagctttggatagattaaaatttttggaaaagtgcttttaagatacaacatccttttcttaaaagcagttttattttctttggtttacaaaatttccct |
121 |
Q |
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| T |
12328924 |
agagctttggatagattgaaatttttggaaaagtgcttttaagatacaacatccttttcttaaaagcagttttattttctttggtttacaaaatttccct |
12328825 |
T |
|
| Q |
122 |
gtctaccacctaatgagcatcatgaaaatttctttttgttcttttaaagccctaaagggtgaaattatgaaaatcaaagagaatataatcatttgttgag |
221 |
Q |
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| T |
12328824 |
gtctaccacctaatgagcatcatgaaaatttctttttgttcttttaaagccctaaagggtgaaattatgaaaatcaaagagaatataatcatttgttgag |
12328725 |
T |
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| Q |
222 |
gcatgaccctacacggtttatgtcttgatctttagtcgacacgattttaaaacttgtgattctcactataagaatcttttaagagttagattttcatttg |
321 |
Q |
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| T |
12328724 |
gcatgaccctacacggtttatgtcttgatctttagtcgacacgattttaaaacttgtgattctcactataagaatcttttaagagttagaatttcatttg |
12328625 |
T |
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| Q |
322 |
tagaaaatttgactaactaatatctctttcctttcacggtacttatacatgcttttgcttttaattatcattcttgcgtttaatcaaggtatcaataatt |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12328624 |
tagaaaatttgactaactaatatctctttcctttcacggtacttatacatgcttttgcttttaattatcattcttgcgtttaatcaaggtatcaataatt |
12328525 |
T |
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| Q |
422 |
caatgagtggctcaattggttctacttttctacatgtcgagtttgtagaagagaactttggtttgattttcacataacacaatactgagaattat |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12328524 |
caatgagtggctcaattggttctacttttctacatgtcgagtttgtagaagagaactttggtttgattttcacataacacaatattgagaattat |
12328430 |
T |
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