View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_low_16 (Length: 524)
Name: NF19520_low_16
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 174 - 510
Target Start/End: Complemental strand, 2112784 - 2112447
Alignment:
| Q |
174 |
tttatcttggatacaaaatcagtttgacaaggagaaattattttagcaatgtaaagcatgagtctattgaccactatgttggatggaatcttaccattca |
273 |
Q |
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| T |
2112784 |
tttatcttggatacaaaatcagtttgacatggagaaattattttagcaatgtaaagcatgagtctattgaccattatgttggtaggaatcttaccattca |
2112685 |
T |
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| Q |
274 |
cattacaaaggcatataagccggaattgattaacaaataattcaaataattaatcaaataatttacatttctcacatattaaagaataatgagtgatttt |
373 |
Q |
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| T |
2112684 |
cattacaaaggcatagaagccgaaattgattaacaaataattcaaataattaatcacataatttacatttctcacatattaaaaaataatgagcgatttt |
2112585 |
T |
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| Q |
374 |
ataaaaaagaatagtaaaggatatgaaagg-nnnnnnnncattaatgatgtattgtttttgtaaattaacatataataaaacacaaatatatttttcaaa |
472 |
Q |
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| T |
2112584 |
ataaaaaagaatagtaaaggatatgaaaggaaaaaaaaacattaatgttgtattgtttttataaattaacatataataaaacacaaatatatttttcaaa |
2112485 |
T |
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| Q |
473 |
gtgacatactgtataataaaatacagagggagtattat |
510 |
Q |
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| T |
2112484 |
gtgacatactgtataataaaatacagagagagtattat |
2112447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 44 - 171
Target Start/End: Complemental strand, 2113986 - 2113859
Alignment:
| Q |
44 |
taatatttgatgcgatcttacacttaagctagagtaactttgattataaaatagggaatttcatctctaattttagttatactcaatagtgtgaaacatc |
143 |
Q |
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| T |
2113986 |
taatatttgatgcgatcttacacttaagccagagcaactttgattataaaatagggaatttcatctctaattttagtcatactcaatagtgtgaaacatc |
2113887 |
T |
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| Q |
144 |
tcctaagcaatgacaacattctcactta |
171 |
Q |
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| T |
2113886 |
tcctaagcaatgacaacattctcactta |
2113859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 434 - 480
Target Start/End: Complemental strand, 3354695 - 3354649
Alignment:
| Q |
434 |
taaattaacatataataaaacacaaatatatttttcaaagtgacata |
480 |
Q |
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| T |
3354695 |
taaagtaacatatattaaaacacaaatatatttttcaaagtgacata |
3354649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 506
Target Start/End: Complemental strand, 14950990 - 14950921
Alignment:
| Q |
431 |
ttgtaaattaacatataataaaacacaaatatatttttcaaagtgacatactgtataataaaatacagagggagta |
506 |
Q |
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| T |
14950990 |
ttgtaaagtgacatattataaaacataaata-atttttcaaagtga-----tgtataataaaatacagagggagta |
14950921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 477
Target Start/End: Complemental strand, 6239282 - 6239219
Alignment:
| Q |
413 |
attaatgatgtattgtttttgtaaattaacatataataaaacacaaatatatttttcaaagtgac |
477 |
Q |
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| T |
6239282 |
attaatgaggcattgatattgtaaagtgacttataataaaacacaaatat-tttttcaaagtgac |
6239219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 467
Target Start/End: Original strand, 30980414 - 30980468
Alignment:
| Q |
413 |
attaatgatgtattgtttttgtaaattaacatataataaaacacaaatatatttt |
467 |
Q |
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| T |
30980414 |
attaatgatgtatttgtattgtaaagtaacatataatgaaacacaaatatttttt |
30980468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 479
Target Start/End: Original strand, 25149523 - 25149571
Alignment:
| Q |
431 |
ttgtaaattaacatataataaaacacaaatatatttttcaaagtgacat |
479 |
Q |
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| T |
25149523 |
ttgtaaagtgacatataatcaaacacaaatattttttccaaagtgacat |
25149571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 472
Target Start/End: Original strand, 52157147 - 52157206
Alignment:
| Q |
412 |
cattaatgatgtattgtttttgtaaattaacatataataaaacacaaatatatttttcaaa |
472 |
Q |
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| T |
52157147 |
cattaatgatgcattgatattgtgaagtgacatataataaaacacaaatat-tttttcaaa |
52157206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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