View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_low_17 (Length: 512)
Name: NF19520_low_17
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Original strand, 33643593 - 33644089
Alignment:
| Q |
1 |
agttgagaaagaaactcttgcttacttgtaaggtccacacttcttcactcacctcctttcaaattcatcctacaaaaatgtccaaacttctctttctcac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33643593 |
agttgagaaagaaactcttgcttacttgtaaggtccacacttcttcactcacctcctctcaaattcatcctacaaaaatgtccaaacttctctttctcac |
33643692 |
T |
|
| Q |
101 |
aatcacaaactcattccacacacactctcttctccaaaaatgtcttccttctcagtacgtttcctcactccaccatccatcactcgtccaaaaacatggc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33643693 |
aatcacaaactcattccacacacactctcttctccaaaaatgtcttccttctcagtacgtttcctcactccaccatccatcactcgtccaaaaacatggc |
33643792 |
T |
|
| Q |
201 |
tactatctgctgcaactccatcagttgcacctgtttcaacaccacaagttgatgtatcaaggttggagcctagagttgaggaaaaagatggttattgggt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33643793 |
tactatctgctgcaactccatcagttgcacctgtttcaacaccacaagttgattcatcaaggttggagcctagagttgaggaaaaagatggttattgggt |
33643892 |
T |
|
| Q |
301 |
tttgaaggaagagtatagaggaggtattaatcctcaggagaaagttaagattcagaaagaaccgatgaagctttttatggaaggtgggattaatgatttg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33643893 |
tttgaaggaagagtatagaggaggtattaatcctcaggagaaagttaagattcagaaagaacctatgaagctttttatggaaggtgggattaatgatttg |
33643992 |
T |
|
| Q |
401 |
gctaatatgtctcttgaagagattgaaagctctaagcttaccaaagatgatattgatgttagactcaaatggcttggtctttttcataggaggaaac |
497 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33643993 |
gctaatatgtctcttgaagagattgaaagctctaagcttactaaagatgatattgatgttagactcaaatggcttggtctttttcataggaggaaac |
33644089 |
T |
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