View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_low_18 (Length: 498)
Name: NF19520_low_18
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 17 - 492
Target Start/End: Original strand, 43926274 - 43926749
Alignment:
| Q |
17 |
agtatatgacccccatttgagcttcaattcctgcaattgtgttctgttggccaggggcatcattatgtatctctaatgccttgtgcagtaactcgagtgc |
116 |
Q |
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| T |
43926274 |
agtatatgacccccatttgagcttcaattcctgcaattgtgttctgttggccaggggcatcattatgtatctctaatgccttgtgcagtaactcgagtgc |
43926373 |
T |
|
| Q |
117 |
ttgttcaagctcattcattgactcataaatagctgcaacattcacaaaaccactagcaatctcctcagaagggacaccaggcatgggattttcatagatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43926374 |
ttgttcaagctcattcattgactcataaatagctgcaacattcacaaaaccactagcaatctcctcagaagggacaccaggcatgggattttcatagatt |
43926473 |
T |
|
| Q |
217 |
ttaagtgcattttcacaatatgattttgattcccttaccttccatgtcctattatacaactcagccaaacgtataaagaccgatccaaccgaaggatgat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43926474 |
ttaagtgcattttcacaatatgattttgattcccttaccttccatgtcctattatacaactcagccaaacgtactaagaccgatccaaccgaaggatgat |
43926573 |
T |
|
| Q |
317 |
tccctcctttgtgagtcttgaaaaccgctaacgcctttttatatgccaagatggcctcatcgtatcgagccaatgataggaatgtgtctccaatgctgca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43926574 |
tccctcctttgtgagtcttgaaaaccgctaacgcctttttatatgccaagatggcctcatcgtatcgagccaatgataggaatgtgtctccaatgctgca |
43926673 |
T |
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| Q |
417 |
atcaacagacgccacttccacttcttggccatttgataccattgccatgcttgctaaaacaaggtgctcctatgct |
492 |
Q |
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| T |
43926674 |
atcaacagacgccacttccacttcttggccatttgataccattgccatgcttgctaaaacaaggtgctccaatgct |
43926749 |
T |
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Target: chr3 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 25 - 482
Target Start/End: Original strand, 35115262 - 35115719
Alignment:
| Q |
25 |
acccccatttgagcttcaattcctgcaattgtgttctgttggccaggggcatcattatgtatctctaatgccttgtgcagtaactcgagtgcttgttcaa |
124 |
Q |
| |
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||||||| |||||||| |||||||| ||||| || || || ||||||||||||| |||||| ||||| || |||||||||| |||||| || |||| |
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| T |
35115262 |
acccccacctgagcttcgattcctgctattgttccttgctgaccgggggcatcattatatatctccaatgctttctgcagtaacttgagtgcctgatcaa |
35115361 |
T |
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| Q |
125 |
gctcattcattgactcataaatagctgcaacattcacaaaaccactagcaatctcctcagaagggacaccaggcatgggattttcatagattttaagtgc |
224 |
Q |
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|||||||||||||||||| ||| || | ||| || ||| |||||||||||||| | || || |||||||| ||||| ||||| ||||||||||| |
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| T |
35115362 |
cctcattcattgactcatagatacttgacagatttgtaagaccgctagcaatctcctctggagtaactccaggcattggattctcatatattttaagtgc |
35115461 |
T |
|
| Q |
225 |
attttcacaatatgattttgattcccttaccttccatgtcctattatacaactcagccaaacgtataaagaccgatccaaccgaaggatgattccctcct |
324 |
Q |
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|| || ||||| || ||||||||||||| ||||| |||||| |||||||| || |||||||||| ||||||||| || || | ||||||||| ||||| |
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| T |
35115462 |
tttatcgcaatacgactttgattcccttatcttccctgtcctgttatacaaatcggccaaacgtacaaagaccgaccctactgctggatgattctctcct |
35115561 |
T |
|
| Q |
325 |
ttgtgagtcttgaaaaccgctaacgcctttttatatgccaagatggcctcatcgtatcgagccaatgataggaatgtgtctccaatgctgcaatcaacag |
424 |
Q |
| |
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||| ||||||||||| |||| ||| |||| |||||| |||| ||||| || ||||||| ||| |||| | ||||||||||||||||||| ||||||| |
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| T |
35115562 |
ttgctggtcttgaaaactgctagcgctttttcatatgcaaagacagcctcgtcatatcgagacaaggataagtatgtgtctccaatgctgcagtcaacag |
35115661 |
T |
|
| Q |
425 |
acgccacttccacttcttggccatttgataccattgccatgcttgctaaaacaaggtg |
482 |
Q |
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| ||||||||| ||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
35115662 |
atgccacttccgcttcttggccatttgcaaccattgccatgctggctaaaacaaggtg |
35115719 |
T |
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