View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19520_low_19 (Length: 493)

Name: NF19520_low_19
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19520_low_19
NF19520_low_19
[»] chr7 (6 HSPs)
chr7 (44-479)||(36886949-36887384)
chr7 (44-96)||(36598327-36598379)
chr7 (36-113)||(28165130-28165207)
chr7 (35-102)||(5276269-5276336)
chr7 (29-83)||(15740395-15740449)
chr7 (44-93)||(24909835-24909884)
[»] chr6 (6 HSPs)
chr6 (1-68)||(17770613-17770680)
chr6 (29-83)||(31624122-31624176)
chr6 (42-83)||(769183-769224)
chr6 (31-71)||(4246444-4246484)
chr6 (29-83)||(1575927-1575981)
chr6 (43-113)||(27595521-27595591)
[»] chr4 (4 HSPs)
chr4 (35-113)||(2996611-2996689)
chr4 (42-113)||(50742790-50742861)
chr4 (44-98)||(21043204-21043258)
chr4 (36-68)||(17223035-17223067)
[»] chr1 (9 HSPs)
chr1 (30-113)||(31517694-31517777)
chr1 (44-113)||(27807162-27807231)
chr1 (30-83)||(37842339-37842392)
chr1 (390-469)||(22557140-22557219)
chr1 (36-83)||(35925729-35925776)
chr1 (36-98)||(37811891-37811953)
chr1 (35-112)||(4445746-4445823)
chr1 (36-101)||(33185924-33185989)
chr1 (46-98)||(4481979-4482031)
[»] chr5 (3 HSPs)
chr5 (44-113)||(4619754-4619823)
chr5 (44-96)||(37611186-37611238)
chr5 (44-96)||(37787916-37787968)
[»] chr3 (11 HSPs)
chr3 (30-83)||(5391912-5391965)
chr3 (46-113)||(2304225-2304292)
chr3 (44-83)||(48048966-48049005)
chr3 (42-112)||(2175804-2175874)
chr3 (30-68)||(3044258-3044296)
chr3 (30-68)||(25925775-25925813)
chr3 (30-68)||(40665462-40665500)
chr3 (35-68)||(53762393-53762426)
chr3 (50-98)||(21574543-21574591)
chr3 (36-96)||(29427616-29427676)
chr3 (30-98)||(40880917-40880985)
[»] chr8 (4 HSPs)
chr8 (36-98)||(7918415-7918477)
chr8 (30-68)||(11118996-11119034)
chr8 (30-62)||(6525625-6525657)
chr8 (30-98)||(30389132-30389200)
[»] chr2 (4 HSPs)
chr2 (44-113)||(787379-787448)
chr2 (44-113)||(43456661-43456730)
chr2 (46-98)||(1494415-1494467)
chr2 (42-113)||(43985254-43985325)
[»] scaffold0608 (1 HSPs)
scaffold0608 (46-98)||(9606-9658)
[»] scaffold0004 (1 HSPs)
scaffold0004 (36-68)||(98639-98671)


Alignment Details
Target: chr7 (Bit Score: 432; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 44 - 479
Target Start/End: Complemental strand, 36887384 - 36886949
Alignment:
Q  44 tgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgcttattataccagtaattaagcttaagtaagtcaa 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36887384 tgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgcttattataccagtaattaagcttaagtaagtcaa 36887285  T
Q  144 ttcagttagaccctaagatcagaatgatattgataattggtatccgtgttctatgtcaaaatgcagaaacattcaagggttagtcctcactgggagtcta 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36887284 ttcagttagaccctaagatcagaatgatattgataattggtatccgtgttctatgtcaaaatgcagaaacattcaagggttagacctcactgggagtcta 36887185  T
Q  244 tgcaggctttataatctccgaaatttgaaacagctgtgagtgtttttgattttgcaaggcattagtattagattcttatatcaggatatgtgaatttcaa 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36887184 tgcaggctttataatctccgaaatttgaaacagctgtgagtgtttttgattttgcaaggcattagtattagattcttatatcaggatatgtgaatttcaa 36887085  T
Q  344 gttatgctattaattaacttgtttccatatttttggtttttgtagggatgtcagttctaataacatagtgggcgaaatgccgtttggtttaccccccaat 443  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36887084 gttatgctattaattaacttgtttccatatttttggtttttgtagggatgtcagttctaataacatagtgggcgaaatgccgtttggtttaccccccaat 36886985  T
Q  444 gtcacacatatgtaaggcaactgttcttctcatttt 479  Q
    ||||||||||||||||||||||||||||||||||||    
T  36886984 gtcacacatatgtaaggcaactgttcttctcatttt 36886949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 36598379 - 36598327
Alignment:
Q  44 tgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaaca 96  Q
    ||||||||||||||||||||||||| ||||| || ||||| ||||||||||||    
T  36598379 tgaaaacagcttatgaacatgtcataagatgtttccataagctctctcaaaca 36598327  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 28165130 - 28165207
Alignment:
Q  36 aaataggttgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgcttat 113  Q
    ||||| ||||||||||||||||||||| ||| |||| || || ||||| || ||||||| ||| | ||||||||||||    
T  28165130 aaataagttgaaaacagcttatgaacaggtcttgagctgtttccataagctatctcaaagagtctcataagtgcttat 28165207  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 5276269 - 5276336
Alignment:
Q  35 aaaataggttgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagtttta 102  Q
    |||||| | |||||||| || ||||| ||||||| ||||| || ||||| ||||||||||||||||||    
T  5276269 aaaataaggtgaaaacaactaatgaagatgtcataagatgtttgcataagctctctcaaacagtttta 5276336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 15740449 - 15740395
Alignment:
Q  29 attataaaaataggttgaaaacagcttatgaacatgtcatgagatggtttcataa 83  Q
    ||||| |||||| ||| ||||||||||||||||||||||| || || ||||||||    
T  15740449 attatgaaaataagttaaaaacagcttatgaacatgtcataagttgttttcataa 15740395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 24909835 - 24909884
Alignment:
Q  44 tgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaa 93  Q
    ||||||||||||||||||||||||| || || ||||||||  ||||||||    
T  24909835 tgaaaacagcttatgaacatgtcattagttgatttcataagttctctcaa 24909884  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 17770680 - 17770613
Alignment:
Q  1 aaattaagttaagtcagtaacttcgaagattataaaaataggttgaaaacagcttatgaacatgtcat 68  Q
    ||||||||||||||||||| |||||| ||||||||||||| ||||||| || ||||||||||||||||    
T  17770680 aaattaagttaagtcagtatcttcgatgattataaaaataagttgaaagcaccttatgaacatgtcat 17770613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 31624122 - 31624176
Alignment:
Q  29 attataaaaataggttgaaaacagcttatgaacatgtcatgagatggtttcataa 83  Q
    ||||| |||||| ||||||||||||||||||||||||||| || || ||||||||    
T  31624122 attatgaaaataagttgaaaacagcttatgaacatgtcataagctgttttcataa 31624176  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 769183 - 769224
Alignment:
Q  42 gttgaaaacagcttatgaacatgtcatgagatggtttcataa 83  Q
    ||||||||||||||||||||||||||| ||||| ||||||||    
T  769183 gttgaaaacagcttatgaacatgtcataagatgttttcataa 769224  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 4246444 - 4246484
Alignment:
Q  31 tataaaaataggttgaaaacagcttatgaacatgtcatgag 71  Q
    |||||||||| ||||||||||||||||| ||||||||||||    
T  4246444 tataaaaataagttgaaaacagcttatggacatgtcatgag 4246484  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 1575927 - 1575981
Alignment:
Q  29 attataaaaataggttgaaaacagcttatgaacatgtcatgagatggtttcataa 83  Q
    ||||| |||||| ||| ||||||||||||||||||||||| || || ||||||||    
T  1575927 attatgaaaataagttaaaaacagcttatgaacatgtcataagttgttttcataa 1575981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 27595591 - 27595521
Alignment:
Q  43 ttgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgcttat 113  Q
    ||||||| |||||||||||||||||| || || || |||||  |||| |||||||| | ||||||||||||    
T  27595591 ttgaaaatagcttatgaacatgtcataagttgtttccataaattctcccaaacagtctcataagtgcttat 27595521  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 35 - 113
Target Start/End: Original strand, 2996611 - 2996689
Alignment:
Q  35 aaaataggttgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgcttat 113  Q
    |||||| |||||||| |||||||| ||||||||| || || |||||||| |||||||||||||| | | ||||||||||    
T  2996611 aaaataagttgaaaaaagcttatggacatgtcataagttgttttcataagctctctcaaacagtctcaaaagtgcttat 2996689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 113
Target Start/End: Complemental strand, 50742861 - 50742790
Alignment:
Q  42 gttgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgcttat 113  Q
    |||||||||||  ||||||||||||||||  || ||||||||  ||||||||||||| | | ||||||||||    
T  50742861 gttgaaaacagggtatgaacatgtcatgaactgttttcataagttctctcaaacagtctaacaagtgcttat 50742790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 21043258 - 21043204
Alignment:
Q  44 tgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagt 98  Q
    |||||||||||||||||| |||||| || || || ||||||||||| ||||||||    
T  21043258 tgaaaacagcttatgaacgtgtcataagctgtttccataacctctcccaaacagt 21043204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 17223067 - 17223035
Alignment:
Q  36 aaataggttgaaaacagcttatgaacatgtcat 68  Q
    ||||| |||||||||||||||||||||||||||    
T  17223067 aaataagttgaaaacagcttatgaacatgtcat 17223035  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 31517777 - 31517694
Alignment:
Q  30 ttataaaaataggttgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgcttat 113  Q
    |||| |||||| | |||||||||||||||||||||||||||| || ||| ||||  |||| |||||||| | | ||||||||||    
T  31517777 ttatgaaaataagctgaaaacagcttatgaacatgtcatgagttgttttgataagttctcccaaacagtctcacaagtgcttat 31517694  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 27807162 - 27807231
Alignment:
Q  44 tgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgcttat 113  Q
    |||| |||||||||||||| ||||| || || |||||||| |||||||||||||| ||| || |||||||    
T  27807162 tgaagacagcttatgaacacgtcatcagctgctttcataagctctctcaaacagtcttacaaatgcttat 27807231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 37842392 - 37842339
Alignment:
Q  30 ttataaaaataggttgaaaacagcttatgaacatgtcatgagatggtttcataa 83  Q
    ||||||||||| | ||||||| ||||||||||||||||| ||||| ||||||||    
T  37842392 ttataaaaataagctgaaaactgcttatgaacatgtcattagatgttttcataa 37842339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 469
Target Start/End: Complemental strand, 22557219 - 22557140
Alignment:
Q  390 gatgtcagttctaataacatagtgggcgaaatgccgtttggtttaccccccaatgtcacacatatgtaaggcaactgttc 469  Q
    ||||||||||| || | |||| |||| ||||| || | ||| ||||||||||||| |||||||||||||| | |||||||    
T  22557219 gatgtcagttccaacagcataatgggtgaaattccatatggattaccccccaatgccacacatatgtaagcctactgttc 22557140  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 35925729 - 35925776
Alignment:
Q  36 aaataggttgaaaacagcttatgaacatgtcatgagatggtttcataa 83  Q
    ||||| ||||||||||||||||||||||||||| || || ||||||||    
T  35925729 aaataagttgaaaacagcttatgaacatgtcataagctgttttcataa 35925776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 37811891 - 37811953
Alignment:
Q  36 aaataggttgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagt 98  Q
    ||||| ||||||||||| ||||||||||||||| || || ||||||||  |||||||| ||||    
T  37811891 aaataagttgaaaacagtttatgaacatgtcataagctgttttcataagttctctcaaccagt 37811953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 4445746 - 4445823
Alignment:
Q  35 aaaataggttgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgctta 112  Q
    |||||| |||||||||||||| ||||||||| || || || ||||||||  |||| |||||||| | | |||||||||    
T  4445746 aaaataagttgaaaacagcttctgaacatgttataagctgctttcataaattctcccaaacagtctcacaagtgctta 4445823  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 33185989 - 33185924
Alignment:
Q  36 aaataggttgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagtttt 101  Q
    ||||| ||||||||||| ||||| | ||||||| |  || |||||||| |||||||||||||||||    
T  33185989 aaataagttgaaaacaggttatggaaatgtcataatttgttttcataaactctctcaaacagtttt 33185924  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 4481979 - 4482031
Alignment:
Q  46 aaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagt 98  Q
    |||||||||||||||||||| || || || ||||||||  |||||||||||||    
T  4481979 aaaacagcttatgaacatgtaataagttgttttcataagttctctcaaacagt 4482031  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 4619754 - 4619823
Alignment:
Q  44 tgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgcttat 113  Q
    ||||| ||||||||||||||||||| || || |||||||| ||||| |||||||| ||  ||||||||||    
T  4619754 tgaaaccagcttatgaacatgtcattagttgttttcataagctctcccaaacagtgttgcaagtgcttat 4619823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 37611238 - 37611186
Alignment:
Q  44 tgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaaca 96  Q
    ||||||||||||||||||||||||  || || |||||||| ||||||||||||    
T  37611238 tgaaaacagcttatgaacatgtcacaagttgttttcataagctctctcaaaca 37611186  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 37787968 - 37787916
Alignment:
Q  44 tgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaaca 96  Q
    ||||||||||||||||||||||||  || || |||||||| ||||||||||||    
T  37787968 tgaaaacagcttatgaacatgtcacaagttgttttcataagctctctcaaaca 37787916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 5391912 - 5391965
Alignment:
Q  30 ttataaaaataggttgaaaacagcttatgaacatgtcatgagatggtttcataa 83  Q
    |||| |||||| ||||||||||||||||||||||||||| || || ||||||||    
T  5391912 ttatgaaaataagttgaaaacagcttatgaacatgtcataagctgttttcataa 5391965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 2304292 - 2304225
Alignment:
Q  46 aaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgcttat 113  Q
    ||||||||||||||||||||||| || || ||||||||  ||||||||| ||||| | ||||| ||||    
T  2304292 aaaacagcttatgaacatgtcataagttgctttcataatttctctcaaatagtttcacaagtgtttat 2304225  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 83
Target Start/End: Complemental strand, 48049005 - 48048966
Alignment:
Q  44 tgaaaacagcttatgaacatgtcatgagatggtttcataa 83  Q
    ||||||||||||||| |||||||||||| |||||||||||    
T  48049005 tgaaaacagcttatggacatgtcatgagttggtttcataa 48048966  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 2175874 - 2175804
Alignment:
Q  42 gttgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgctta 112  Q
    |||||||||||||||  |||||||||| || || |||||||| || ||||||| ||| ||| |||||||||    
T  2175874 gttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 2175804  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 3044296 - 3044258
Alignment:
Q  30 ttataaaaataggttgaaaacagcttatgaacatgtcat 68  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  3044296 ttatgaaaataagttgaaaacagcttatgaacatgtcat 3044258  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 25925775 - 25925813
Alignment:
Q  30 ttataaaaataggttgaaaacagcttatgaacatgtcat 68  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  25925775 ttatgaaaataagttgaaaacagcttatgaacatgtcat 25925813  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 40665462 - 40665500
Alignment:
Q  30 ttataaaaataggttgaaaacagcttatgaacatgtcat 68  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  40665462 ttataaaaataagctgaaaacagcttatgaacatgtcat 40665500  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 53762426 - 53762393
Alignment:
Q  35 aaaataggttgaaaacagcttatgaacatgtcat 68  Q
    |||||| |||||||||||||||||||||||||||    
T  53762426 aaaataagttgaaaacagcttatgaacatgtcat 53762393  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 21574543 - 21574591
Alignment:
Q  50 cagcttatgaacatgtcatgagatggtttcataacctctctcaaacagt 98  Q
    ||||||||||||||||||| || || |||||||| ||||| ||||||||    
T  21574543 cagcttatgaacatgtcataagttgttttcataagctctcccaaacagt 21574591  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 29427676 - 29427616
Alignment:
Q  36 aaataggttgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaaca 96  Q
    ||||| |||||||| |||||||||||||||||| || || ||||||||  |||| ||||||    
T  29427676 aaataagttgaaaatagcttatgaacatgtcattaggtgttttcataagttctcccaaaca 29427616  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 40880985 - 40880917
Alignment:
Q  30 ttataaaaataggttgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagt 98  Q
    ||||||||||| ||| |||||| |||| |  |||||||| || || |||||||| ||||||||||||||    
T  40880985 ttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctctcaaacagt 40880917  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 7918477 - 7918415
Alignment:
Q  36 aaataggttgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagt 98  Q
    ||||| |||| |||||||||||||||||||| | || || |||||||| ||||| ||||||||    
T  7918477 aaataagttggaaacagcttatgaacatgtcttaagttgttttcataagctctcccaaacagt 7918415  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 11119034 - 11118996
Alignment:
Q  30 ttataaaaataggttgaaaacagcttatgaacatgtcat 68  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  11119034 ttataaaaatatgctgaaaacagcttatgaacatgtcat 11118996  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 6525657 - 6525625
Alignment:
Q  30 ttataaaaataggttgaaaacagcttatgaaca 62  Q
    ||||||||||| |||||||||||||||||||||    
T  6525657 ttataaaaataagttgaaaacagcttatgaaca 6525625  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 30389132 - 30389200
Alignment:
Q  30 ttataaaaataggttgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagt 98  Q
    |||| |||||| | |||||||| |||||||||||||||| || |  |||||||  ||||||||||||||    
T  30389132 ttatgaaaataagctgaaaacaacttatgaacatgtcattagctattttcatatgctctctcaaacagt 30389200  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 787379 - 787448
Alignment:
Q  44 tgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgcttat 113  Q
    ||||||||||||||| ||||||||| || || ||||||||  |||| |||||||| | | ||||||||||    
T  787379 tgaaaacagcttatggacatgtcataagctgttttcataagttctcacaaacagtgtcacaagtgcttat 787448  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 43456730 - 43456661
Alignment:
Q  44 tgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgcttat 113  Q
    ||||||||| ||||| |||||||||||| || ||||| || |||| ||||||||| ||| ||||| ||||    
T  43456730 tgaaaacagtttatggacatgtcatgagttgttttcacaagctctttcaaacagtcttacaagtgtttat 43456661  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 1494467 - 1494415
Alignment:
Q  46 aaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagt 98  Q
    ||||||| ||||| ||||||||| || || |||||||| ||||||||||||||    
T  1494467 aaaacagtttatggacatgtcataagctgttttcataagctctctcaaacagt 1494415  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 43985254 - 43985325
Alignment:
Q  42 gttgaaaacagcttatgaacatgtcatgagatggtttca-taacctctctcaaacagttttataagtgcttat 113  Q
    |||||||| |||||||| ||||||||| || || ||||| ||| |||||||||||||||||| ||||| ||||    
T  43985254 gttgaaaaaagcttatggacatgtcataagttg-tttcagtaatctctctcaaacagttttacaagtgtttat 43985325  T

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Target: scaffold0608 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 9658 - 9606
Alignment:
Q  46 aaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagt 98  Q
    |||||||||||||||||||| || || || ||||||||  |||||||||||||    
T  9658 aaaacagcttatgaacatgtaataagttgttttcataagttctctcaaacagt 9606  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 98671 - 98639
Alignment:
Q  36 aaataggttgaaaacagcttatgaacatgtcat 68  Q
    ||||| |||||||||||||||||||||||||||    
T  98671 aaataagttgaaaacagcttatgaacatgtcat 98639  T

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