View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_low_20 (Length: 481)
Name: NF19520_low_20
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 3 - 470
Target Start/End: Complemental strand, 1369099 - 1368630
Alignment:
| Q |
3 |
aatcatcttccttaaatttcacccc-tttcattcttgcaatattgacccctaatcccattgttgaattgtgattcggagctgaaaacagagcttgcattt |
101 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1369099 |
aatcatcttccttaaatttcaccccctttcattcttgcaatattgactcctaatcccattgttgaattgtgattcggaactgaaaacagagcttgcattt |
1369000 |
T |
|
| Q |
102 |
tagtaatagcttgaatacatcgcgatgctccaacatcatgccttctaaccaagtgaacgcgaacaacagcttggaacttcactacattcttactctttag |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1368999 |
tagtaatagcttgaatacatcgcgatgctccaacatcatgccttctaaccaagtgaacgcgaacaacagcttgcaacttcactacattcttactctttag |
1368900 |
T |
|
| Q |
202 |
aagtgctctccgaactaaatatcctctaattgaagcctggatga-tatcgcagcaaattctggaggattgacatccatcgtactctcaatttttgtgata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
1368899 |
aagtgctctccgaactaaatatcctctaattgaagcctggatgattatcgcagcagattctggaggattaacatccatcgtactctcaatttcggtgata |
1368800 |
T |
|
| Q |
301 |
attatttctggcatctctgagcatgcatcagaggataaccgcggcttcttattagagaaatatgttgtacaaatcttctcattggtggattctttaatgt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1368799 |
attatttctggcatctctgagcatgcatcggaggataaccgcggcttcttattagagaaatatgttgtacaaatcttctcattggtggattccttaatgt |
1368700 |
T |
|
| Q |
401 |
attcttccattgtggcaacaaaactatcaacaacattcacgttcgctagctgacacttagttacattcat |
470 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1368699 |
attcttccattgtggcaacaaaactatcaacaacattcacgttcgctagctgacacttagttacattcat |
1368630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 390 - 470
Target Start/End: Complemental strand, 24840976 - 24840896
Alignment:
| Q |
390 |
ttctttaatgtattcttccattgtggcaacaaaactatcaacaacattcacgttcgctagctgacacttagttacattcat |
470 |
Q |
| |
|
||||||||||||| |||| |||||||| |||||||||||| ||||||||||||| | || ||||| ||||||||||||||| |
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|
| T |
24840976 |
ttctttaatgtatacttctattgtggcgacaaaactatcagcaacattcacgttaggtaactgacccttagttacattcat |
24840896 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 3 - 380
Target Start/End: Complemental strand, 23571941 - 23571563
Alignment:
| Q |
3 |
aatcatcttccttaaatttcacccctttcattcttgcaatattgacccctaatcccattgttgaattgtgattcggagctgaaaacagagcttgcatttt |
102 |
Q |
| |
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|||||||||||||||| ||||||| ||||||||| || | | ||| |||||||||||||||||||||| ||| ||||||||| | || |||||||||| |
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| T |
23571941 |
aatcatcttccttaaacttcacccttttcattctcgcgacaatgagtcctaatcccattgttgaattgtaattaggagctgaagatggaccttgcatttt |
23571842 |
T |
|
| Q |
103 |
agtaatagcttgaatacatcgcgatgctccaacatcatgccttctaaccaagtgaacgcgaacaacagcttggaacttcactacattcttactctttaga |
202 |
Q |
| |
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|||||||||||||| | |||||||||||||||| ||||||||||||||||||| |||||||||||||||| || ||||||||||||||||| |||||| |
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| T |
23571841 |
agtaatagcttgaacatgtcgcgatgctccaacagcatgccttctaaccaagtgtccgcgaacaacagcttgcaatttcactacattcttactatttaga |
23571742 |
T |
|
| Q |
203 |
agtgctctccgaactaaatatcctctaattgaagcctggatga-tatcgcagcaaattctggaggattgacatccatcgtactctcaatttttgtgataa |
301 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| | || |||||| |||| |||||||||||||||| | |||||||||||| ||||||| |
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| T |
23571741 |
agtgctctccgaaccaaatatcctctaattgaagcctggattattaatgcagcagattccggaggattgacatccaccatactctcaatttcggtgataa |
23571642 |
T |
|
| Q |
302 |
ttatttctggcatctctgagcatgcatcagaggataaccgcggcttcttattagagaaatatgttgtacaaatcttctc |
380 |
Q |
| |
|
|| || ||||||| || |||||||||| ||||||||| | |||||| ||||||||||| |||||||||||||||||| |
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|
| T |
23571641 |
ttgttcctggcatatccgagcatgcattggaggataactgtagcttctcattagagaaatctgttgtacaaatcttctc |
23571563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 390 - 470
Target Start/End: Original strand, 18179988 - 18180068
Alignment:
| Q |
390 |
ttctttaatgtattcttccattgtggcaacaaaactatcaacaacattcacgttcgctagctgacacttagttacattcat |
470 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||| || ||||||||||||||||||||| |
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|
| T |
18179988 |
ttctttaatgtattcttccattgtagcaacaaaactgtcagcaacattcacgttcggtaactgacacttagttacattcat |
18180068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 391 - 463
Target Start/End: Original strand, 5646347 - 5646419
Alignment:
| Q |
391 |
tctttaatgtattcttccattgtggcaacaaaactatcaacaacattcacgttcgctagctgacacttagtta |
463 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||||||||||| | || ||||| |||||||| |
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|
| T |
5646347 |
tctttcatgtattcttccattgtggcaacaaaactatcagcaacattcacgttaggtaactgacccttagtta |
5646419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 407 - 470
Target Start/End: Complemental strand, 26375666 - 26375603
Alignment:
| Q |
407 |
ccattgtggcaacaaaactatcaacaacattcacgttcgctagctgacacttagttacattcat |
470 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||| |||| || ||||||||||||||||||||| |
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|
| T |
26375666 |
ccattgtggcaataaaactatcagcaacattcactttcggtaactgacacttagttacattcat |
26375603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 6e-35; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 95 - 214
Target Start/End: Complemental strand, 7657992 - 7657873
Alignment:
| Q |
95 |
tgcattttagtaatagcttgaatacatcgcgatgctccaacatcatgccttctaaccaagtgaacgcgaacaacagcttggaacttcactacattcttac |
194 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| ||| ||||||| ||||||||||||||||||| | |||||| ||||||| ||||||||| ||||||||| |
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| T |
7657992 |
tgcattttagcaatagcttgaacacatcgcaatgttccaacagcatgccttctaaccaagtgcccacgaacagcagcttgcaacttcactgcattcttac |
7657893 |
T |
|
| Q |
195 |
tctttagaagtgctctccga |
214 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
7657892 |
tctttagaagtgctctccga |
7657873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 218 - 381
Target Start/End: Complemental strand, 7657775 - 7657611
Alignment:
| Q |
218 |
aaatatcctctaattgaagcctggatgat-atcgcagcaaattctggaggattgacatccatcgtactctcaatttttgtgataattatttctggcatct |
316 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||| |||| || ||||||||||||| | || ||||| | | |||| |||| |||||||||||| |
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|
| T |
7657775 |
aaatatcctctaattgaagcctggatgattatcacagcagattccggtggattgacatccaccttattctcagtctcggtgacaattgtttctggcatct |
7657676 |
T |
|
| Q |
317 |
ctgagcatgcatcagaggataaccgcggcttcttattagagaaatatgttgtacaaatcttctca |
381 |
Q |
| |
|
| ||||| |||| ||||||||| ||||||| | ||||||||||| ||||||||||||||||||| |
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|
| T |
7657675 |
ccgagcagacatcggaggataactgcggcttttcattagagaaatctgttgtacaaatcttctca |
7657611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 441
Target Start/End: Original strand, 28660058 - 28660106
Alignment:
| Q |
393 |
tttaatgtattcttccattgtggcaacaaaactatcaacaacattcacg |
441 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||| |||| |||||| |
|
|
| T |
28660058 |
tttaatgtattcttccaatgtggcaccaaaactatcagcaacgttcacg |
28660106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 423
Target Start/End: Complemental strand, 52900523 - 52900489
Alignment:
| Q |
389 |
attctttaatgtattcttccattgtggcaacaaaa |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
52900523 |
attctttaatgtattcttccattgtggcaacaaaa |
52900489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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