View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_low_22 (Length: 470)
Name: NF19520_low_22
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 167 - 453
Target Start/End: Original strand, 41785339 - 41785623
Alignment:
| Q |
167 |
tttagaaatattcttaatagtattatgcttcattaaggttcactaatcaatcatccacgtttaacctatctagctagcttcttccttnnnnnnnncctat |
266 |
Q |
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| T |
41785339 |
tttagaaatattcttaatagtattatgcttcattaaggttcactaatcaatcatccacatttaacctatctagctagcttcttccttaaaaaaaacctat |
41785438 |
T |
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| Q |
267 |
ttagcttgcctttgtactggtttgcatgtgatcggatggtgagtggtgaccaaatatatatactttatgcacggtggttgaaattgatttttccctaatc |
366 |
Q |
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| T |
41785439 |
ttagcttgcctttgtactggtttgcatgtgatcggatggtgagtggtgaccaaatatatt--ctttatgcatggtggttgaacttgatttttccctaatc |
41785536 |
T |
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| Q |
367 |
tttagtaacatgctaatgacatttgagttgatgatttgttcctttcggttctgttttatttttcatttagcaagaaacatcaaaaaa |
453 |
Q |
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| T |
41785537 |
tatagtaacatgctaatgacatttgagttgatgatttgttcctttcggttctgttttatttttcatttagcaagaaacataaaaaaa |
41785623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 9 - 177
Target Start/End: Original strand, 41785110 - 41785277
Alignment:
| Q |
9 |
agaaaatgaaagttaagttaagtgaaaattcatctaaatatgtcatgtgatcgattaagttgtcacataaacatttcaattgttatattatcaaaaatat |
108 |
Q |
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| T |
41785110 |
agaaaatgaaagctaagttaagtaaaaattcatctaaatatgtcatgtgatcgactaagttgtcacataaacatctcaattgttatattatc-aaaatat |
41785208 |
T |
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| Q |
109 |
agcctcaaaatatacaagaataaaataaacatttaaattggaggatcgatatattgaatttagaaatat |
177 |
Q |
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| T |
41785209 |
aacctcaaaatacacaagagtaaaataaacattcaaattggaggaccaatatattaaatttagagatat |
41785277 |
T |
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