View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_low_23 (Length: 459)
Name: NF19520_low_23
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 13 - 401
Target Start/End: Original strand, 28289568 - 28289956
Alignment:
| Q |
13 |
attggttgttccgttccatctcacggcaatcttgaaaaatgggctttgcaggtaaccattgattattttgattctatagaattgttggaaattggttatt |
112 |
Q |
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| T |
28289568 |
attggttgttccattccatctcacggcaatcttgaaaaatgggctttgcaggtaaccattgattattttgattctatagaattgttggaaattggttatt |
28289667 |
T |
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| Q |
113 |
ttaatcttgtccaaacatttcattcttacaaatatttattttctgcaaaaagtgtgatttccttgaatggcctctcaattttctgtaaaacatacagatt |
212 |
Q |
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| T |
28289668 |
ttaatcttgtccaaacatttcattcttacaaatatttattttctgcaaaaagtgtgatttccttgaatggcctctcaattttctgtaaaacatacagatt |
28289767 |
T |
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| Q |
213 |
tgtggactagtttacattgcacaattaaagcatacattgtggacatgttcttacaaaataacaataaaaataattgtgaccaaatatatattttcagctt |
312 |
Q |
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| T |
28289768 |
tgtggactagtttacattgcacaattaaagcatacattgtggacatgttcttacaaaataacaataaaaataattgtgaccaaatatatattttcagctt |
28289867 |
T |
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| Q |
313 |
gtagataacatatttttcaatgataaagacaagaatttatgtcaataactaaaattcacagatttaagtgacaattagttttattgaac |
401 |
Q |
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| T |
28289868 |
gtagataacatatttttcaatgataaagacaagaatttatgtcaataactaaaattcaaagatttaagtgacaattaattttattgaac |
28289956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 446
Target Start/End: Original strand, 19250906 - 19250938
Alignment:
| Q |
414 |
tcttatgaagttaggaaagtgtctgttctaaac |
446 |
Q |
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| T |
19250906 |
tcttatgaagttaggaaagtgtctgttctaaac |
19250938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 28281484 - 28281524
Alignment:
| Q |
37 |
ggcaatcttgaaaaatgggctttgcaggtaaccattgatta |
77 |
Q |
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| T |
28281484 |
ggcaatcttgaaaaatgggctctgcaggtaaccattcatta |
28281524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 28300631 - 28300684
Alignment:
| Q |
14 |
ttggttgttccgttccatctcacggcaatcttgaaaaatgggctttgcaggtaa |
67 |
Q |
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| T |
28300631 |
ttggttgttcgattccgtctcatggtaatcttgaaaaatgggctgtgcaggtaa |
28300684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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