View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_low_24 (Length: 455)
Name: NF19520_low_24
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 33038476 - 33038721
Alignment:
| Q |
16 |
atagttaaagttaaggggaaacttggagaaagaatattagagaagcacttgtataaagcgatgacaaggcaaagtttataaagtaaatactatgcatatc |
115 |
Q |
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| T |
33038476 |
atagttaaagttaaggggaaacttggagaaagaatattagagaagcacttgtataaagggatgacaaggcaaagtttataaagtaaatactatgcatatc |
33038575 |
T |
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| Q |
116 |
ttacaaaaagtactttatgaagaatataatatctttagcaaaattggatcttgcattgcatgatgcttttgggttgaaccaaccaatgttaaacataatt |
215 |
Q |
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| T |
33038576 |
ttacaaaaagtactttatgaagaatataatatctttagcaaaattggatcttgcattgcatgatgcttttgggttgaaccaaccaatgttaaacataatt |
33038675 |
T |
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| Q |
216 |
aaatagcttaagcacaagttcaaagaggattggtctttaaacactc |
261 |
Q |
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| T |
33038676 |
aaatagcttaagcacaagttcaaagaggattggtcttaaaacactc |
33038721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 289 - 437
Target Start/End: Original strand, 33038744 - 33038892
Alignment:
| Q |
289 |
gtagcaaggtggagaaagaaaggacacatcacctatatattatatgcttctcaaatcttagcaaattttctatagctctttgtccagttaaaaataattt |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33038744 |
gtagcaaggtggagaaagaaaggacacatcacctatatattatatgcttctcaaatcttagcaaattttctatagctctttgtccagttaaaaataattt |
33038843 |
T |
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| Q |
389 |
caaaggctaagggctatacctactaatttggccattgagacctaagcac |
437 |
Q |
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| T |
33038844 |
caaaggctaagggctatacctactaatttggccattgagacctaagcac |
33038892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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