View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19520_low_25 (Length: 454)

Name: NF19520_low_25
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19520_low_25
NF19520_low_25
[»] chr3 (2 HSPs)
chr3 (49-440)||(38286778-38287167)
chr3 (317-402)||(18758001-18758085)
[»] chr6 (5 HSPs)
chr6 (49-440)||(13054970-13055367)
chr6 (219-438)||(14357466-14357685)
chr6 (49-199)||(14357718-14357868)
chr6 (317-404)||(23091222-23091308)
chr6 (317-444)||(15360926-15361052)
[»] chr8 (5 HSPs)
chr8 (219-440)||(28160653-28160874)
chr8 (49-199)||(28160475-28160625)
chr8 (320-402)||(25760237-25760318)
chr8 (317-400)||(3735448-3735530)
chr8 (317-400)||(3735708-3735790)
[»] chr2 (3 HSPs)
chr2 (219-403)||(30543367-30543551)
chr2 (317-403)||(28668066-28668151)
chr2 (356-402)||(21601955-21602001)
[»] chr4 (2 HSPs)
chr4 (317-404)||(18204752-18204838)
chr4 (356-402)||(16705916-16705962)
[»] chr1 (1 HSPs)
chr1 (321-403)||(20265900-20265981)
[»] scaffold0576 (1 HSPs)
scaffold0576 (317-444)||(5910-6036)
[»] chr7 (1 HSPs)
chr7 (317-400)||(2750565-2750647)


Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 49 - 440
Target Start/End: Original strand, 38286778 - 38287167
Alignment:
Q  49 gtttaaatttgaagagcttttcttgataatatatacattgtgttaggttcttttacaatgaatacattgaaggacttgttttgtatatttttgagtaatg 148  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38286778 gtttaaatttgaagagcttttcttgataatatatgcattgtgttaggttcttttacaatgaatacattgaatgacttgttttgtatatttttgagtaatg 38286877  T
Q  149 aaattcctctatgaaaatataattattttaaatgatctttagaattaattaatttnnnnnnnnnnnnnnncttacgataacacttttataaaaagggcta 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||| ||||||||||||||||||||    
T  38286878 aaattcctctatgaaaatataattattttaaatgatctttagaattaattaattttaaaaaaaaaaaa--cttacgatagcacttttataaaaagggcta 38286975  T
Q  249 ttaatgacagggtaaaaataaatgactaaagatatcacttatatgaaaagagctattaatacatggtctttaatagcattttaaaagtactattataggt 348  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||     
T  38286976 ttaacgacagggtaaaaataaatgattaaagatatcacttatatgaaaagagctattaatacagggtctttaatatcattttaaaagtgctattatagga 38287075  T
Q  349 ggtataccttacaatagcaggggctttaatagcacttttgagtgctattaaaggctnnnnnnngtgctattaatcaccttttttggcgtagt 440  Q
     ||||||||||||||||| |||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  38287076 tgtataccttacaatagcgggggctttaatagcacttttgagtgctattaaaggctaaaaaaagtgctattaatcaccttttttggcgtagt 38287167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 402
Target Start/End: Complemental strand, 18758085 - 18758001
Alignment:
Q  317 tttaatagcattttaaaagtactattataggtggtataccttacaatagcaggggctttaatagcacttttgagtgctattaaagg 402  Q
    |||||||||  ||||||||| |||||| |   ||||||| |||||||||  | |||||||||||||||||| |||||||| |||||    
T  18758085 tttaatagccctttaaaagtgctattaaaaacggtatac-ttacaatagtggcggctttaatagcactttttagtgctatcaaagg 18758001  T

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Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 49 - 440
Target Start/End: Complemental strand, 13055367 - 13054970
Alignment:
Q  49 gtttaaatttgaagagcttttcttgataatatatacattgtgttaggttcttttacaatgaatacattgaaggacttgttttgtatatttttgagtaatg 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  13055367 gtttaaatttgaagagcttttcttgataatatatacattgtgttaggttcttttacaatgaatacattgaatgacttgttttgtaaatttttgagtaatg 13055268  T
Q  149 aaattcctctatgaaaatataattattttaaatgatctttagaattaattaat------ttnnnnnnnnnnnnnnncttacgataacacttttataaaaa 242  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| |      ||               ||||||||| |||||||||||||     
T  13055267 aaattcctctatgaaaatatacttattttaaatgatctttagaattaattattaattttttttttttaaaaaataacttacgatagcacttttataaaat 13055168  T
Q  243 gggctattaatgacagggtaaaaataaatgactaaagatatcacttatatgaaaagagctattaatacatggtctttaatagcattttaaaagtactatt 342  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||| ||||||||||||||||| |||||    
T  13055167 gggctattaacgacagggtaaaaataaatgactaaagatatcacttttatgaaaagtgctattaatacagggtcttcaatagcattttaaaagtgctatt 13055068  T
Q  343 ataggtggtataccttacaatagcaggggctttaatagcacttttgagtgctattaaaggctnnnnnnngtgctattaatcaccttttttggcgtagt 440  Q
    ||||||||||| || ||||||||| |||||||||||||||||||| ||||||||||||||||       |||||||||||||||||||||||||||||    
T  13055067 ataggtggtattccctacaatagcgggggctttaatagcacttttaagtgctattaaaggctaaaaaaagtgctattaatcaccttttttggcgtagt 13054970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 219 - 438
Target Start/End: Complemental strand, 14357685 - 14357466
Alignment:
Q  219 cttacgataacacttttataaaaagggctattaatgacagggtaaaaataaatgactaaagatatcacttatatgaaaagagctattaatacatggtctt 318  Q
    ||||| ||| |||||||||||||||||||||| |  ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  14357685 cttacaatagcacttttataaaaagggctattgaccacatggtaaaaataaatgactaaagatatcacttatatgaaaagtgctattaatacagggtctt 14357586  T
Q  319 taatagcattttaaaagtactattataggtggtataccttacaatagcaggggctttaatagcacttttgagtgctattaaaggctnnnnnnngtgctat 418  Q
    |||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||       |||||||    
T  14357585 taatagcattttaaaagtgctattataggtggtatatcctacaatagcaggggctttaatagcacttttgagtgctattaaagactaaaaaaagtgctat 14357486  T
Q  419 taatcaccttttttggcgta 438  Q
    |||| |||||||||||||||    
T  14357485 taattaccttttttggcgta 14357466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 49 - 199
Target Start/End: Complemental strand, 14357868 - 14357718
Alignment:
Q  49 gtttaaatttgaagagcttttcttgataatatatacattgtgttaggttcttttacaatgaatacattgaaggacttgttttgtatatttttgagtaatg 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  14357868 gtttaaatttgaagagcttttcttgataatatatacattgtgttaggttcttttacaatgaatacattaaatgacttgttttgtatatttttgagtaatg 14357769  T
Q  149 aaattcctctatgaaaatataattattttaaatgatctttagaattaatta 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14357768 aaattcctctatgaaaatataattattttaaatgatctttagaattaatta 14357718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 317 - 404
Target Start/End: Complemental strand, 23091308 - 23091222
Alignment:
Q  317 tttaatagcattttaaaagtactattataggtggtataccttacaatagcaggggctttaatagcacttttgagtgctattaaaggct 404  Q
    |||||||||||||||||||| ||||| | ||||  |||  |||||||||| |||||||||| ||||||||| | ||||||||||||||    
T  23091308 tttaatagcattttaaaagtgctattgttggtgtcatat-ttacaatagcgggggctttaagagcacttttaaatgctattaaaggct 23091222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 444
Target Start/End: Original strand, 15360926 - 15361052
Alignment:
Q  317 tttaatagcattttaaaagtactattataggtggtataccttacaatagcaggggctttaatagcacttttgagtgctattaaaggctnnnnnnngtgct 416  Q
    |||||||||| ||||||||| |||| | |||  |||| | |||||||||| | ||||| |||||||||||| |||||||||||| ||        |||||    
T  15360926 tttaatagcactttaaaagtgctatcaaaggaagtatgc-ttacaatagcggaggcttcaatagcacttttaagtgctattaaaagcaaaaaaaagtgct 15361024  T
Q  417 attaatcaccttttttggcgtagtataa 444  Q
    |||||   ||||||||||||||||||||    
T  15361025 attaaatcccttttttggcgtagtataa 15361052  T

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Target: chr8 (Bit Score: 157; Significance: 3e-83; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 219 - 440
Target Start/End: Original strand, 28160653 - 28160874
Alignment:
Q  219 cttacgataacacttttataaaaagggctattaatgacagggtaaaaataaatgactaaagatatcacttatatgaaaagagctattaatacatggtctt 318  Q
    ||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||    
T  28160653 cttacgatagcacttttataaaatgggctattaacgacagggtaaaaataaatgactaaagatatcacttttatgaaaagtgctattaatacagggtctt 28160752  T
Q  319 taatagcattttaaaagtactattataggtggtataccttacaatagcaggggctttaatagcacttttgagtgctattaaaggctnnnnnnngtgctat 418  Q
     ||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||       |||||||    
T  28160753 caatagcattttaaaagtgctattataggtggtataccctacaatagcgggggctttaatagcacttttaagtgctattaaaggctaaaaaaagtgctat 28160852  T
Q  419 taatcaccttttttggcgtagt 440  Q
    ||||||||||||||||||||||    
T  28160853 taatcaccttttttggcgtagt 28160874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 49 - 199
Target Start/End: Original strand, 28160475 - 28160625
Alignment:
Q  49 gtttaaatttgaagagcttttcttgataatatatacattgtgttaggttcttttacaatgaatacattgaaggacttgttttgtatatttttgagtaatg 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28160475 gtttaaatttgaagagcttttcttgataatatatacattgtgttaggttcttttacaatgaatacattgaatgacttgttttgtatatttttgagtaatg 28160574  T
Q  149 aaattcctctatgaaaatataattattttaaatgatctttagaattaatta 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28160575 aaattcctctatgaaaatataattattttaaatgatctttagaattaatta 28160625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 402
Target Start/End: Complemental strand, 25760318 - 25760237
Alignment:
Q  320 aatagcattttaaaagtactattataggtggtataccttacaatagcaggggctttaatagcacttttgagtgctattaaagg 402  Q
    ||||||| ||||||||  |||||||| ||| | ||| |||||||||| |||| ||||||||||||||| ||||||||| ||||    
T  25760318 aatagcactttaaaagagctattataagtgctgtac-ttacaatagcgggggatttaatagcacttttaagtgctattgaagg 25760237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 400
Target Start/End: Original strand, 3735448 - 3735530
Alignment:
Q  317 tttaatagcattttaaaagtactattataggtggtataccttacaatagcaggggctttaatagcacttttgagtgctattaaa 400  Q
    |||||||||| ||||||||| |||| | |||  |||| | |||||||||| | ||||| |||||||||||| ||||||||||||    
T  3735448 tttaatagcactttaaaagtgctatcaaaggaagtatgc-ttacaatagcggaggcttcaatagcacttttaagtgctattaaa 3735530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 400
Target Start/End: Original strand, 3735708 - 3735790
Alignment:
Q  317 tttaatagcattttaaaagtactattataggtggtataccttacaatagcaggggctttaatagcacttttgagtgctattaaa 400  Q
    |||||||||| ||||||||| |||| | |||  |||| | |||||||||| | ||||| |||||||||||| ||||||||||||    
T  3735708 tttaatagcactttaaaagtgctatcaaaggaagtatgc-ttacaatagcggaggcttcaatagcacttttaagtgctattaaa 3735790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 219 - 403
Target Start/End: Complemental strand, 30543551 - 30543367
Alignment:
Q  219 cttacgataacacttttataaaaagggctattaatgacagggtaaaaataaatgactaaagatatcacttatatgaaaagagctattaatacatggtctt 318  Q
    ||||| ||| |||||| ||||||||||||||||||||  || | ||||||||||||| | |||| ||||||| |  |||||||||||||    |||||||    
T  30543551 cttactatagcactttaataaaaagggctattaatgaagggttcaaaataaatgacttacgatagcacttatttcgaaagagctattaaagactggtctt 30543452  T
Q  319 taatagcattttaaaagtactattataggtggtataccttacaatagcaggggctttaatagcacttttgagtgctattaaaggc 403  Q
    ||||||  |||||||||| |||||| |  ||||||||| ||||||||  | || ||| ||||| ||||| |||||||||||||||    
T  30543451 taatagtgttttaaaagtgctattaaaaatggtataccctacaatagaggaggttttgatagcccttttaagtgctattaaaggc 30543367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 317 - 403
Target Start/End: Original strand, 28668066 - 28668151
Alignment:
Q  317 tttaatagcattttaaaagtactattataggtggtataccttacaatagcaggggctttaatagcacttttgagtgctattaaaggc 403  Q
    |||||||||| ||||||||| |||| |||||  |||| | |||||||||| | ||||| |||||||||||| |||||||||||||||    
T  28668066 tttaatagcactttaaaagtgctatcataggcagtatgc-ttacaatagcggaggcttcaatagcacttttaagtgctattaaaggc 28668151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 402
Target Start/End: Original strand, 21601955 - 21602001
Alignment:
Q  356 cttacaatagcaggggctttaatagcacttttgagtgctattaaagg 402  Q
    ||||||||||| |||| ||||||||||||||| ||||||||| ||||    
T  21601955 cttacaatagcgggggatttaatagcacttttaagtgctattgaagg 21602001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 317 - 404
Target Start/End: Original strand, 18204752 - 18204838
Alignment:
Q  317 tttaatagcattttaaaagtactattataggtggtataccttacaatagcaggggctttaatagcacttttgagtgctattaaaggct 404  Q
    ||||||||| |||||||||| |||||| | || |||| | |||||||||| ||||||| |||||||||||| |||||||| |||||||    
T  18204752 tttaatagcgttttaaaagtgctattaaatgttgtatgc-ttacaatagcgggggcttcaatagcacttttaagtgctatcaaaggct 18204838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 402
Target Start/End: Complemental strand, 16705962 - 16705916
Alignment:
Q  356 cttacaatagcaggggctttaatagcacttttgagtgctattaaagg 402  Q
    ||||||||||| |||| ||||||||||||||| ||||||||| ||||    
T  16705962 cttacaatagcgggggatttaatagcacttttaagtgctattgaagg 16705916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 321 - 403
Target Start/End: Original strand, 20265900 - 20265981
Alignment:
Q  321 atagcattttaaaagtactattataggtggtataccttacaatagcaggggctttaatagcacttttgagtgctattaaaggc 403  Q
    |||||| ||||||||| |||| |||||  |||| | |||||||||| ||||||| |||||||||||| |||||||||||||||    
T  20265900 atagcactttaaaagtgctatcataggcagtatgc-ttacaatagcgggggcttcaatagcacttttaagtgctattaaaggc 20265981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 444
Target Start/End: Original strand, 5910 - 6036
Alignment:
Q  317 tttaatagcattttaaaagtactattataggtggtataccttacaatagcaggggctttaatagcacttttgagtgctattaaaggctnnnnnnngtgct 416  Q
    |||||||||| ||||||||| |||| | |||  |||| | |||||||||| | ||||| |||||||||||| |||||||||||| ||        |||||    
T  5910 tttaatagcactttaaaagtgctatcaaaggaagtatgc-ttacaatagcggaggcttcaatagcacttttaagtgctattaaaagcaaaaaaaagtgct 6008  T
Q  417 attaatcaccttttttggcgtagtataa 444  Q
    |||||   ||||||||||||||||||||    
T  6009 attaaatcccttttttggcgtagtataa 6036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 400
Target Start/End: Complemental strand, 2750647 - 2750565
Alignment:
Q  317 tttaatagcattttaaaagtactattataggtggtataccttacaatagcaggggctttaatagcacttttgagtgctattaaa 400  Q
    |||||||||| ||||||||| |||| | |||  |||| | |||||||||| | ||||| |||||||||||| ||||||||||||    
T  2750647 tttaatagcactttaaaagtgctatcaaaggaagtatgc-ttacaatagcggaggcttcaatagcacttttaagtgctattaaa 2750565  T

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