View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_low_28 (Length: 435)
Name: NF19520_low_28
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 52697536 - 52697115
Alignment:
| Q |
1 |
ggcgcttctaattatcttgtgttaccatcacattgttttatagagaaccactgtatatagcgaacatttgtttcgcgaaactcttactaattcaaagtag |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
52697536 |
ggcgcttctaattatcttgtgttaccatcacatt-ttttatagagaaccactgtatatagcgaacatttgtttcgcgaaactcttacgaattcaaagtag |
52697438 |
T |
|
| Q |
101 |
ccaatcaaaaaatattctgaccagcaaacacagcagaggaggcaattttaattaccctcaatatattgccacgttcttatttattgaaatgagtagagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52697437 |
ccaatcaaaaaatattctgaccagcaaacacagcagaggaggcaattttaattaccctcaatatattgccacgttcttatttattgaaatgagtagagaa |
52697338 |
T |
|
| Q |
201 |
atgatattttgagatcaaaattttgatgtccaataccatattctttagtttttatgtgcattttttaaacacgtataaattgtagaagataaaaaacact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52697337 |
atgatattttgagatcaaaattttgatgtccaataccatattctttagtttttatgtgcattttttaaacacgtataaattgtagaagataaaaaacact |
52697238 |
T |
|
| Q |
301 |
atggtgttagtattttaatgttcaaataaacgaagaatgagaggtatcaaatacatgggaagacgaatacttacgtgtatacgactctgatcctttagag |
400 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52697237 |
atggtgttagtattttaatgttcaaataaacaaagaatgagaggtatcaaatacatgggaagacgaatacttacgtgtatacgactctgatcctatagag |
52697138 |
T |
|
| Q |
401 |
tgtttgtttcaactaggactctg |
423 |
Q |
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|||||||||||||||||| |||| |
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| T |
52697137 |
tgtttgtttcaactaggattctg |
52697115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 27769318 - 27769269
Alignment:
| Q |
206 |
attttgagatcaaaattttgatgtccaataccatattctttagtttttat |
255 |
Q |
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||||||||||||||||||||||||| |||||||||| |||| ||||||| |
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| T |
27769318 |
attttgagatcaaaattttgatgtcaaataccatatcttttaatttttat |
27769269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 26631795 - 26631755
Alignment:
| Q |
195 |
agagaaatgatattttgagatcaaaattttgatgtccaata |
235 |
Q |
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|||||||||||||||||| ||| ||||||||||||| |||| |
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| T |
26631795 |
agagaaatgatattttgacatcgaaattttgatgtcaaata |
26631755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 18433662 - 18433718
Alignment:
| Q |
199 |
aaatgatattttgagatcaaaattttgatgtccaataccatattctttagtttttat |
255 |
Q |
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|||| ||||||| | ||||||||||||||||| ||||| ||||||||| ||||||| |
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| T |
18433662 |
aaattatattttaacatcaaaattttgatgtcaaatacaatattctttgatttttat |
18433718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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