View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_low_30 (Length: 430)
Name: NF19520_low_30
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_low_30 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 13 - 430
Target Start/End: Original strand, 11711579 - 11711996
Alignment:
| Q |
13 |
aatatcagcaacctcagatcctaatgaacaagtggattcatggccaaatcaagagtttaagttagaagctgttcattcttcagaggcatttgagatgata |
112 |
Q |
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| T |
11711579 |
aatatcagcaacctcagatcctaatgaacaagtggattcatggccaaatcaagagtttaagttagaagctgttcattcttcagaggcatttgagatgata |
11711678 |
T |
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| Q |
113 |
cagagtcacttgtctctggtactaggagaacggactgtgggtcctctccagacaattattcagattagcaaaatcaagctgggtaagttatacgctgctt |
212 |
Q |
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| T |
11711679 |
cagagtcacttgtctctggtactaggagaacgggctgtgggtcctcttcagacaattattcagattagcaaaatcaagctgggtaagttatacgctgctt |
11711778 |
T |
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| Q |
213 |
caataatgtatggatattttctcaaacgggttgatgaacgctttcaactggagaggtcagtgggaacacttccacaggatttgggtaaagaaaatattag |
312 |
Q |
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| T |
11711779 |
caataatgtatggatattttctcaaacgggttgatgaacgctttcaactggagaggtcagtgggaacacttccacaggatttgggtaaagaaaatattag |
11711878 |
T |
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| Q |
313 |
ttttgatgaaccatcgccaccaaacaagctctgggattcagattccttgattaggatctatcctgatgacgaaggttattatgaaatggatgacatgaat |
412 |
Q |
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| T |
11711879 |
ttttgatgaaccatcgccaccaaacaagctctgggattcagattccttgattaggatctatcctgatgacgaaggttattatgaaatggatgacatgaat |
11711978 |
T |
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| Q |
413 |
actggtgatggtgaaggc |
430 |
Q |
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| T |
11711979 |
actggtgatggtgaaggc |
11711996 |
T |
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