View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_low_34 (Length: 415)
Name: NF19520_low_34
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 205 - 397
Target Start/End: Complemental strand, 2244628 - 2244440
Alignment:
| Q |
205 |
atcaatgctgaatatacctactaacaaacttatccaagatcgatgaaggtgaaaagaggtacatagtggacaagatttctgaagacattcttagttcttt |
304 |
Q |
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| T |
2244628 |
atcaatgctgaatatacctactaacaaacttatccaagat----gaaggtgaaaagaggtacatagtggacaagatttctgaagacattcttagttcttt |
2244533 |
T |
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| Q |
305 |
taaatttaattcattcaagaattgatgatgactcaatgatagctcgctcttgttggagagcagaagataaaaagatttttgtataattgcatc |
397 |
Q |
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| T |
2244532 |
taaatttaattcattcaagaattgatgatgactcaatgatagctcgctcttgttggagagcagaagataaaaagatttttgtataattgcatc |
2244440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 2244776 - 2244629
Alignment:
| Q |
18 |
cacagatgatatatagccacccaatttcgtccataagagcacatgggttgtgcgggtggcggtttgaacgggtggtaagcgactcaaatacttcacacac |
117 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2244776 |
cacagatgatatatagccacccaatttcgtccat----------gggttgtgcgggtggcggtttgaacgggtggtaagcgactcaaatacttcacacac |
2244687 |
T |
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| Q |
118 |
--gttcgatctctgacttttccgtatgaaaaaatctgatttacagaggagaatatatc |
173 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2244686 |
acgttcgatctctgacttttccgtatgaaaaaatctgatttacaaaggagaatatatc |
2244629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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