View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19520_low_35 (Length: 415)

Name: NF19520_low_35
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19520_low_35
NF19520_low_35
[»] chr5 (15 HSPs)
chr5 (16-394)||(13454167-13454528)
chr5 (16-122)||(13451086-13451192)
chr5 (16-128)||(13388972-13389084)
chr5 (32-112)||(13447230-13447310)
chr5 (223-329)||(13413963-13414069)
chr5 (16-140)||(13419663-13419787)
chr5 (55-128)||(13385151-13385224)
chr5 (32-113)||(13413334-13413415)
chr5 (32-128)||(13393379-13393475)
chr5 (32-107)||(13426570-13426645)
chr5 (223-329)||(13393167-13393273)
chr5 (218-326)||(13426918-13427026)
chr5 (20-107)||(13379205-13379292)
chr5 (20-98)||(13373409-13373487)
chr5 (251-293)||(13379454-13379496)
[»] chr4 (3 HSPs)
chr4 (55-132)||(47601524-47601601)
chr4 (234-268)||(13238328-13238362)
chr4 (234-268)||(13238548-13238582)
[»] scaffold0131 (2 HSPs)
scaffold0131 (234-268)||(22066-22100)
scaffold0131 (234-268)||(22286-22320)
[»] chr1 (2 HSPs)
chr1 (234-268)||(27343899-27343933)
chr1 (234-268)||(27344119-27344153)


Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 16 - 394
Target Start/End: Original strand, 13454167 - 13454528
Alignment:
Q  16 caattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactttgcttcccacttctgtaactatgc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13454167 caattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactttgcttcccacttctgtaactatgc 13454266  T
Q  116 caacaatttcatgtctgcatatatttttacaccaattagattcaaattgaatttatatcttgatttatatgtttggnnnnnnnaaaatgcagtaaaatta 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||    
T  13454267 caacaatttcatgtctgcatatatttttacaccaattagattcaaattgaatttatatcttgattta-----------------aaatgcagtaaaatta 13454349  T
Q  216 gaaagcttacccgggaactagtggatagttcgtagtgccccattcattcttcgccttatgaaggtccgagtgacatattccacaatacaacactcttaat 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13454350 gaaagcttacccgggaactagtggatagttcgtagtgccccattcattcttcgccttatgaaggtccgagtgacatattccacaatacaacactcttaat 13454449  T
Q  316 gctacgtctttttcgcatatttccctgaaaatttaacgtactaaattagattgaattatgataaaaacttccttctctc 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13454450 gctacgtctttttcgcatatttccctgaaaatttaacgtactaaattagattgaattatgataaaaacttccttctctc 13454528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 13451086 - 13451192
Alignment:
Q  16 caattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactttgcttcccacttctgtaactatgc 115  Q
    |||||||| ||||| |||||||||||||| |||||||||||||  ||||||||| ||| ||||||||||  |||||||||||| || | ||||||||| |    
T  13451086 caattttggcatgattgacaagaatcaacgaagcatcccacactaactctgtcttcaattttgaactttaccactttgcttccaacctgtgtaactatcc 13451185  T
Q  116 caacaat 122  Q
    |||||||    
T  13451186 caacaat 13451192  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 13389084 - 13388972
Alignment:
Q  16 caattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactttgcttcccacttctgtaactatgc 115  Q
    ||||||||||||||  |||| |||||||||| | | || ||||||||| |||||||||| ||||||||||  |||||||||||||| | ||| ||||| |    
T  13389084 caattttgacatgatcgacatgaatcaaccatgtagccaacacctactttgtctccaacattgaacttttctactttgcttcccacctttgtcactatac 13388985  T
Q  116 caacaatttcatg 128  Q
    ||||||| |||||    
T  13388984 caacaatctcatg 13388972  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 13447230 - 13447310
Alignment:
Q  32 gacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactttgcttcccacttctgtaacta 112  Q
    |||| |||||||||| | ||||||| |||||| ||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  13447230 gacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttactttgcttcccacctctgttacta 13447310  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 329
Target Start/End: Original strand, 13413963 - 13414069
Alignment:
Q  223 tacccgggaactagtggatagttcgtagtgccccattcattcttcgccttatgaaggtccgagtgacatattccacaatacaacactcttaatgctacgt 322  Q
    ||||| ||||| |||||||||   | |||||||||||||||||| ||| |||| || || ||||||||||| ||||||||||||||  | |||||||| |    
T  13413963 tacccaggaacaagtggatagaaggaagtgccccattcattcttagccatatggagatcagagtgacatatcccacaatacaacaccttgaatgctacat 13414062  T
Q  323 ctttttc 329  Q
    |||||||    
T  13414063 ctttttc 13414069  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 13419663 - 13419787
Alignment:
Q  16 caattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactttgcttcccacttctgtaactatgc 115  Q
    |||||||| |||||  |||| |||||||||| | |||||||||| ||| ||||||||||||| |||||||  ||||||||||| || || || ||||| |    
T  13419663 caattttggcatgaacgacatgaatcaaccatgtatcccacaccaactttgtctccaactttaaacttttctactttgcttccaacctcggttactatac 13419762  T
Q  116 caacaatttcatgtctgcatatatt 140  Q
    |  ||| |||||| |||||| ||||    
T  13419763 ccgcaagttcatgcctgcatttatt 13419787  T

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Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 13385224 - 13385151
Alignment:
Q  55 acacctactctgtctccaactttgaactttttcactttgcttcccacttctgtaactatgccaacaatttcatg 128  Q
    ||||||||| |||||||||| ||||||||||  |||||||||||||| | ||| ||||| |||||||| |||||    
T  13385224 acacctactttgtctccaacattgaacttttctactttgcttcccacctttgtcactataccaacaatctcatg 13385151  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 13413334 - 13413415
Alignment:
Q  32 gacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactttgcttcccacttctgtaactat 113  Q
    |||| ||||||| |||| | || ||||||||| ||||||||||||| ||||| | |||||||||||| |||||||| |||||    
T  13413334 gacatgaatcaatcaagtagccaacacctactttgtctccaactttaaacttctccactttgcttcctacttctgttactat 13413415  T

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Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 128
Target Start/End: Complemental strand, 13393475 - 13393379
Alignment:
Q  32 gacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactttgcttcccacttctgtaactatgccaacaatttcatg 128  Q
    |||| |||||||| |||||||||||||| ||| ||||||||| ||||||||| |  ||||||||||| || || || ||||| ||| |||| |||||    
T  13393475 gacacgaatcaactaagcatcccacacccactttgtctccaattttgaacttctctactttgcttcctacctccgtcactataccagcaatctcatg 13393379  T

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Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 13426570 - 13426645
Alignment:
Q  32 gacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactttgcttcccacttctgt 107  Q
    |||| |||||||||| | ||||||| |||||| ||||||||||||| |||||||  ||||||||||| || |||||    
T  13426570 gacatgaatcaaccatgtatcccactcctactttgtctccaactttaaacttttctactttgcttccaacctctgt 13426645  T

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Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 329
Target Start/End: Complemental strand, 13393273 - 13393167
Alignment:
Q  223 tacccgggaactagtggatagttcgtagtgccccattcattcttcgccttatgaaggtccgagtgacatattccacaatacaacactcttaatgctacgt 322  Q
    ||||| ||||||||||||||| | |   ||||||||||||||||   | ||||||| |||||||||||||| ||||||||||  ||| | ||||| || |    
T  13393273 tacccaggaactagtggataggtagacatgccccattcattctttatcatatgaagatccgagtgacatatcccacaatacagtactttaaatgccacat 13393174  T
Q  323 ctttttc 329  Q
    |||||||    
T  13393173 ctttttc 13393167  T

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Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 326
Target Start/End: Original strand, 13426918 - 13427026
Alignment:
Q  218 aagcttacccgggaactagtggatagttcgtagtgccccattcattcttcgccttatgaaggtccgagtgacatattccacaatacaacactcttaatgc 317  Q
    |||| ||||| ||||||| ||||||| | | | |||||||||||||||||  | |||| || || | ||||||||| ||||||||||||||  | |||||    
T  13426918 aagcataccctggaactaatggatagatggaattgccccattcattcttcatcatatggagatcagtgtgacatataccacaatacaacaccttgaatgc 13427017  T
Q  318 tacgtcttt 326  Q
    ||| |||||    
T  13427018 tacatcttt 13427026  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 13379205 - 13379292
Alignment:
Q  20 tttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactttgcttcccacttctgt 107  Q
    |||||||||| || || ||  |||||| ||| |||||||| || || |||||||||||||  |||||||| ||||||||||| |||||    
T  13379205 tttgacatgaatggcaggatccaaccatgcaccccacaccaaccctatctccaactttgatgtttttcaccttgcttcccacctctgt 13379292  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 13373409 - 13373487
Alignment:
Q  20 tttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactttgcttcc 98  Q
    ||||||||||||| || ||  |||||| ||| || ||||||||  |||||||||||||||||||| ||||  |||||||    
T  13373409 tttgacatgagtggcaggatccaaccatgcaccctacacctaccttgtctccaactttgaactttgtcaccatgcttcc 13373487  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 293
Target Start/End: Original strand, 13379454 - 13379496
Alignment:
Q  251 tgccccattcattcttcgccttatgaaggtccgagtgacatat 293  Q
    ||||||| |||||||||||| |||| |||||||||||||||||    
T  13379454 tgccccactcattcttcgccatatggaggtccgagtgacatat 13379496  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 47601524 - 47601601
Alignment:
Q  55 acacctactctgtctccaactttgaactttttcactttgcttcccacttctgtaactatgccaacaatttcatgtctg 132  Q
    ||||| ||| |||||||||||||||||||||  |||||||||||||||| ||| ||||| |||||||| |||||||||    
T  47601524 acacccactttgtctccaactttgaacttttctactttgcttcccacttttgtcactataccaacaatctcatgtctg 47601601  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 268
Target Start/End: Original strand, 13238328 - 13238362
Alignment:
Q  234 tagtggatagttcgtagtgccccattcattcttcg 268  Q
    |||||||||||||||||||||||||||||||||||    
T  13238328 tagtggatagttcgtagtgccccattcattcttcg 13238362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 268
Target Start/End: Original strand, 13238548 - 13238582
Alignment:
Q  234 tagtggatagttcgtagtgccccattcattcttcg 268  Q
    |||||||||||||||||||||||||||||| ||||    
T  13238548 tagtggatagttcgtagtgccccattcatttttcg 13238582  T

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Target: scaffold0131 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 268
Target Start/End: Complemental strand, 22100 - 22066
Alignment:
Q  234 tagtggatagttcgtagtgccccattcattcttcg 268  Q
    |||||||||||||||||||||||||||||||||||    
T  22100 tagtggatagttcgtagtgccccattcattcttcg 22066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 268
Target Start/End: Complemental strand, 22320 - 22286
Alignment:
Q  234 tagtggatagttcgtagtgccccattcattcttcg 268  Q
    |||| ||||||||||||||||||||||||||||||    
T  22320 tagttgatagttcgtagtgccccattcattcttcg 22286  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 268
Target Start/End: Complemental strand, 27343933 - 27343899
Alignment:
Q  234 tagtggatagttcgtagtgccccattcattcttcg 268  Q
    |||||||||||||||||||||||||||||||||||    
T  27343933 tagtggatagttcgtagtgccccattcattcttcg 27343899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 268
Target Start/End: Complemental strand, 27344153 - 27344119
Alignment:
Q  234 tagtggatagttcgtagtgccccattcattcttcg 268  Q
    |||||||||||||||||||||||||||||||||||    
T  27344153 tagtggatagttcgtagtgccccattcattcttcg 27344119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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