View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19520_low_37 (Length: 407)
Name: NF19520_low_37
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_low_37 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 54235591 - 54235983
Alignment:
| Q |
1 |
aagaaggttctccgttctcttccaaagctcacagcaacagaggaatccgccgtgaaattctctgattgtgctatctgtttaagcgaattcaccgcaggag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54235591 |
aagaaggttctccgttctcttccaaagctcacagcaacagaggaatccgccgtgaaattctctgattgtgctatctgtttaagcgaattcaccgcaggag |
54235690 |
T |
|
| Q |
101 |
atgaaatccgagtgttgcctcagtgcggccatggcttccatgtgtcttgtattgatttatggctcagatcccattcatcatgtccttcctgccgtcagat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
54235691 |
atgaaatccgagtgttgcctcagtgcggccatggctttcatgtgtcttgtattgatttatggctcagatctcattcatcatgtccttcctgccgtcagat |
54235790 |
T |
|
| Q |
201 |
tctggtagtttctagatgcgataagtgcggcgggattcctcctcccgccacaacaacgacggccggctccagctctacggaggcaccggcgccggattgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
54235791 |
tctggtagtttctagatgcgataagtgcggcgggattcctcctcccgccacaactacgacggccggctccagctctacggcggcaccggcgccagattgt |
54235890 |
T |
|
| Q |
301 |
gaaggtagattaaaggtaagggaggatgatgaaaacagattcttgccatagatttcgaattatataaatagttcaaaattagaaagtcctttt |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54235891 |
gaaggtagattaaaggtaagggaggatgatgaaaacagattcttgccatagatttcgaattatataaatagttcaaaattagaaagtcctttt |
54235983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 38241842 - 38241972
Alignment:
| Q |
1 |
aagaaggttctccgttctcttccaaagctcacagcaacagaggaatccgccgtgaaattctctgattgtgctatctgtttaagcgaattcaccgcaggag |
100 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||| | |||||||||||| |||| ||| ||||||||||||||||| |||| |||| |
|
|
| T |
38241842 |
aagaaggttctcctctctcttccaaagcttacagcaacagaggaatacaccgtgaaattct---attgcgctgtctgtttaagcgaattctccgccggag |
38241938 |
T |
|
| Q |
101 |
atgaaatccgagtgttgcctcagtgcggccatgg |
134 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
38241939 |
atgaaattcgagtgttgcctcagtgcggccatgg |
38241972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 7311073 - 7311203
Alignment:
| Q |
1 |
aagaaggttctccgttctcttccaaagctcacagcaacagaggaatccgccgtgaaattctctgattgtgctatctgtttaagcgaattcaccgcaggag |
100 |
Q |
| |
|
||||||||||||| |||||||||||||| ||| |||||||||||| |||||||||||||| ||| |||| ||||||||||||||| ||| | || |
|
|
| T |
7311073 |
aagaaggttctcctctctcttccaaagcttacaacaacagaggaatacgccgtgaaattct---attacactatttgtttaagcgaattctccgttgaag |
7311169 |
T |
|
| Q |
101 |
atgaaatccgagtgttgcctcagtgcggccatgg |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
7311170 |
atgaaatccgagtgttgcctcagtgcggccatgg |
7311203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University