View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_low_39 (Length: 404)
Name: NF19520_low_39
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 6e-84; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 4 - 161
Target Start/End: Original strand, 36925414 - 36925571
Alignment:
| Q |
4 |
tttcaggcaggaattgacaatgtggatactggtcatgaggcgaaaatgaccgaaaacaccctggtggtgatgaatacttctgatgaaattcgaggtggta |
103 |
Q |
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| T |
36925414 |
tttcaggcaggaattgacaatgtggatactggtcatgaggcgaaaatgaccgaaaacaccctggtggtgatgaatacttctgatgaaattcgaggtggta |
36925513 |
T |
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| Q |
104 |
agatatttgcattgaagtagttatcttatttatgcaatctgtaatatcatgtttgtaa |
161 |
Q |
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| T |
36925514 |
agatatttgcattgaagtagttatcttatttatgcaatctgtaatatcatgtttgtaa |
36925571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 224 - 398
Target Start/End: Original strand, 36925634 - 36925808
Alignment:
| Q |
224 |
aaaagaaaaatcacttttatcattttaatagtgttttgttaaccnnnnnnnnnngggctatgctaagtagtgccctaaggacattgtttaaagaaactat |
323 |
Q |
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| T |
36925634 |
aaaagaaaaatcacttttatcattttaatagtgttttgttaaccaaaaaaaaaagggctatgctaagtagtgccctaaggacattgtttaaagaaactat |
36925733 |
T |
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| Q |
324 |
aaatagtaattgagaaatgataggtataaacccatttgtgacaattttgaacaatgttctctctcatactcattt |
398 |
Q |
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| T |
36925734 |
aaatagtaattgagaaatgatagttatacaaccatttgtgacaattttgaacaattttctctctcatactcattt |
36925808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 161
Target Start/End: Original strand, 36927188 - 36927341
Alignment:
| Q |
5 |
ttcaggcaggaattgacaatgtggatactggtcatgaggcgaaaatgaccgaaaacaccctggtggtgatgaatacttctgatgaaattcgaggtggtaa |
104 |
Q |
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| T |
36927188 |
ttcaggcaggacttgaaaatgtagattcaggttatgaggcaaaagtgactgagaacaccccggtg---acgaacacttcagagaaatttcgaggtggtaa |
36927284 |
T |
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| Q |
105 |
gatatttgcattgaagtagttatcttatttatgcaatctgtaatatcatgtttgtaa |
161 |
Q |
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| T |
36927285 |
gatatgcacattgaactagttatcttatttgtgctatctgttagatcatgcttgtaa |
36927341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 36928916 - 36928972
Alignment:
| Q |
89 |
aaattcgaggtggtaagatatttgcattgaagtagttatcttatttatgcaatctgt |
145 |
Q |
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| T |
36928916 |
aaatccgaggtggtaagatattcacattgaactagttatctcatttgtgcaatctgt |
36928972 |
T |
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