View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19520_low_4 (Length: 804)

Name: NF19520_low_4
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19520_low_4
NF19520_low_4
[»] chr5 (10 HSPs)
chr5 (1-408)||(10491257-10491661)
chr5 (188-467)||(35940944-35941217)
chr5 (189-518)||(22729806-22730150)
chr5 (189-467)||(11339865-11340141)
chr5 (292-467)||(36950050-36950231)
chr5 (361-467)||(43097486-43097592)
chr5 (468-519)||(10491168-10491219)
chr5 (468-518)||(36950248-36950298)
chr5 (468-507)||(35941234-35941273)
chr5 (468-518)||(43097419-43097469)
[»] chr8 (20 HSPs)
chr8 (188-467)||(17497331-17497610)
chr8 (189-467)||(32037920-32038205)
chr8 (189-467)||(44626163-44626440)
chr8 (189-467)||(26005353-26005637)
chr8 (292-467)||(38143918-38144096)
chr8 (383-518)||(1262293-1262444)
chr8 (313-467)||(34548032-34548192)
chr8 (189-437)||(45265965-45266201)
chr8 (358-467)||(39517382-39517492)
chr8 (358-418)||(18324938-18324998)
chr8 (292-418)||(38151017-38151156)
chr8 (189-277)||(18325086-18325174)
chr8 (313-351)||(27146-27184)
chr8 (476-518)||(18324767-18324809)
chr8 (189-274)||(34547926-34548009)
chr8 (468-517)||(39517316-39517365)
chr8 (225-277)||(1262550-1262602)
chr8 (189-244)||(38151220-38151276)
chr8 (474-518)||(44626096-44626140)
chr8 (206-244)||(38144160-38144198)
[»] chr6 (22 HSPs)
chr6 (599-787)||(32932554-32932741)
chr6 (189-467)||(18338153-18338428)
chr6 (189-467)||(7553236-7553515)
chr6 (313-467)||(9972814-9972972)
chr6 (315-467)||(23848515-23848668)
chr6 (296-467)||(27101542-27101714)
chr6 (296-467)||(27143364-27143536)
chr6 (313-459)||(32932258-32932405)
chr6 (370-467)||(19543501-19543598)
chr6 (370-467)||(22958085-22958182)
chr6 (370-467)||(23830210-23830307)
chr6 (661-786)||(32921339-32921454)
chr6 (189-262)||(28498183-28498256)
chr6 (189-262)||(29810594-29810667)
chr6 (222-277)||(15121374-15121429)
chr6 (468-518)||(18338086-18338136)
chr6 (315-367)||(22958005-22958057)
chr6 (315-367)||(23830335-23830387)
chr6 (365-424)||(15121527-15121586)
chr6 (468-518)||(23848685-23848735)
chr6 (222-277)||(32932181-32932234)
chr6 (468-518)||(32932430-32932480)
[»] chr7 (14 HSPs)
chr7 (205-518)||(26450758-26451081)
chr7 (189-463)||(32517162-32517442)
chr7 (187-467)||(267556-267842)
chr7 (206-467)||(48853640-48853908)
chr7 (370-467)||(29148717-29148813)
chr7 (358-442)||(40771630-40771714)
chr7 (358-416)||(40771303-40771361)
chr7 (475-518)||(5172843-5172886)
chr7 (361-463)||(5172914-5173016)
chr7 (468-518)||(40771211-40771261)
chr7 (217-275)||(40771481-40771539)
chr7 (474-518)||(267865-267909)
chr7 (474-518)||(278932-278976)
chr7 (384-467)||(278836-278909)
[»] chr1 (15 HSPs)
chr1 (238-518)||(39574468-39574764)
chr1 (189-456)||(47858159-47858433)
chr1 (240-467)||(39581084-39581311)
chr1 (361-467)||(41140914-41141020)
chr1 (361-518)||(24515347-24515520)
chr1 (370-467)||(9764979-9765075)
chr1 (370-467)||(9758363-9758460)
chr1 (370-467)||(12017733-12017828)
chr1 (189-277)||(12017543-12017632)
chr1 (474-518)||(12017852-12017896)
chr1 (364-405)||(24523138-24523179)
chr1 (468-516)||(24523220-24523268)
chr1 (189-244)||(24515180-24515235)
chr1 (189-244)||(24522962-24523017)
chr1 (475-518)||(39580484-39580527)
[»] scaffold0040 (2 HSPs)
scaffold0040 (189-467)||(60339-60625)
scaffold0040 (189-467)||(67815-68101)
[»] chr2 (28 HSPs)
chr2 (212-467)||(24138425-24138687)
chr2 (189-467)||(15144088-15144363)
chr2 (217-467)||(40113451-40113702)
chr2 (222-467)||(670053-670293)
chr2 (206-467)||(14661303-14661570)
chr2 (313-467)||(3950041-3950197)
chr2 (313-467)||(41826604-41826751)
chr2 (313-467)||(23888339-23888495)
chr2 (313-467)||(23892415-23892571)
chr2 (358-462)||(17530016-17530120)
chr2 (358-466)||(18341561-18341669)
chr2 (222-467)||(662821-663061)
chr2 (379-467)||(39190149-39190237)
chr2 (362-467)||(17527304-17527409)
chr2 (188-277)||(4840381-4840470)
chr2 (296-467)||(25336220-25336395)
chr2 (212-277)||(39190331-39190396)
chr2 (468-518)||(18341687-18341737)
chr2 (215-276)||(17529868-17529929)
chr2 (474-518)||(41826537-41826581)
chr2 (215-277)||(17527152-17527214)
chr2 (468-518)||(39190082-39190132)
chr2 (468-508)||(15144380-15144420)
chr2 (189-277)||(3950221-3950307)
chr2 (468-518)||(669986-670036)
chr2 (468-514)||(25336157-25336203)
chr2 (365-467)||(33425963-33426069)
chr2 (468-518)||(40113382-40113434)
[»] chr3 (33 HSPs)
chr3 (189-467)||(32285539-32285816)
chr3 (253-467)||(32280656-32280872)
chr3 (269-467)||(3469892-3470089)
chr3 (287-467)||(31112420-31112597)
chr3 (188-463)||(45677701-45677983)
chr3 (315-467)||(39032682-39032843)
chr3 (323-467)||(29960875-29961021)
chr3 (323-467)||(30010080-30010226)
chr3 (284-467)||(19240430-19240614)
chr3 (188-429)||(39350937-39351184)
chr3 (315-467)||(39039695-39039855)
chr3 (365-467)||(11458172-11458274)
chr3 (358-466)||(46611859-46611967)
chr3 (389-467)||(10626311-10626389)
chr3 (370-467)||(38445686-38445783)
chr3 (361-467)||(41273005-41273111)
chr3 (205-328)||(30006661-30006782)
chr3 (191-277)||(46612061-46612145)
chr3 (188-467)||(50158215-50158492)
chr3 (189-270)||(11458360-11458440)
chr3 (474-518)||(41272938-41272982)
chr3 (468-518)||(3469825-3469875)
chr3 (468-518)||(19240631-19240681)
chr3 (468-518)||(29961038-29961088)
chr3 (468-518)||(30010243-30010293)
chr3 (468-517)||(39032860-39032909)
chr3 (468-518)||(10626406-10626456)
chr3 (468-518)||(11172128-11172178)
chr3 (476-518)||(31112353-31112395)
chr3 (188-245)||(32280567-32280622)
chr3 (189-277)||(41273190-41273275)
chr3 (189-277)||(39032555-39032646)
chr3 (468-517)||(39039872-39039921)
[»] scaffold0502 (4 HSPs)
scaffold0502 (189-467)||(8977-9252)
scaffold0502 (189-467)||(4277-4552)
scaffold0502 (468-518)||(8910-8960)
scaffold0502 (468-518)||(4210-4260)
[»] chr4 (24 HSPs)
chr4 (189-467)||(33366798-33367082)
chr4 (189-467)||(42567458-42567745)
chr4 (189-434)||(54256331-54256571)
chr4 (358-467)||(36048930-36049039)
chr4 (345-518)||(35904965-35905155)
chr4 (370-467)||(6262245-6262342)
chr4 (318-467)||(24423153-24423304)
chr4 (358-467)||(13393666-13393775)
chr4 (358-467)||(13396805-13396914)
chr4 (379-467)||(18891116-18891204)
chr4 (370-467)||(2228897-2228994)
chr4 (189-351)||(33361764-33361937)
chr4 (358-460)||(44160709-44160811)
chr4 (188-246)||(24423029-24423087)
chr4 (192-276)||(44160532-44160616)
chr4 (399-467)||(33361679-33361747)
chr4 (474-518)||(54256217-54256261)
chr4 (386-437)||(123918-123969)
chr4 (468-518)||(2228830-2228880)
chr4 (468-518)||(6262178-6262228)
chr4 (189-277)||(6262390-6262475)
chr4 (468-518)||(13393792-13393842)
chr4 (468-518)||(13396931-13396981)
chr4 (468-518)||(44160834-44160884)
[»] scaffold0062 (3 HSPs)
scaffold0062 (357-467)||(40132-40242)
scaffold0062 (188-276)||(39953-40042)
scaffold0062 (468-518)||(40259-40309)
[»] scaffold0027 (1 HSPs)
scaffold0027 (357-467)||(134537-134647)
[»] scaffold1634 (1 HSPs)
scaffold1634 (370-467)||(30-127)
[»] scaffold0045 (1 HSPs)
scaffold0045 (370-518)||(30056-30220)
[»] scaffold1074 (1 HSPs)
scaffold1074 (248-351)||(25-129)


Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 10491661 - 10491257
Alignment:
Q  1 cgtatagtgatattgctaagaatgatc-gacctacgaattctagttaagcaaatgcccttgtaaattttattttcgtaaaagttacacttttcaaatact 99  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10491661 cgtatagtgatattgctaagaatgatccgacctacgaattctagttaagcaaatgcccttgtaaattttattttcgtaaaagttacacttttcaaatact 10491562  T
Q  100 agtgattttgttaaaaatgatcgatctacgaagcaagtgaccttgtaagttttattttcgtaaaacttacac-tttcatgtagtagtggatgataaaagt 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10491561 agtgattttgttaaaaatgatcgatctacgaagcaagtgaccttgtaagttttattttcgtaaaacttacacttttcatgtagtagtggatgataaaagt 10491462  T
Q  199 tttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataaagaaggaataagaaattgtgtacgtgtaggatttaggattcatg 298  Q
    ||||||||||  ||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||    
T  10491461 tttaatatttcgccatggatcattagatacaaattatagtatatcatcggtaacaaagaaggaataagaaattgtatacctgtaggatttaggattcatg 10491362  T
Q  299 aaggatagttgtcggaaggatgagagggatgactaccctcatttcgtttagcagcaaaatgttcagaatgattaaccgtctgataggatgacgtttaaat 398  Q
    |||||||| |||| ||||||||||||||||     |||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  10491361 aaggatagctgtcagaaggatgagagggat-----ccctcattccgtttagcagcaaaatgttcagaatgattaaccgtctgatgggatgatgtttaaat 10491267  T
Q  399 agctaaacgg 408  Q
    ||||||||||    
T  10491266 agctaaacgg 10491257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 188 - 467
Target Start/End: Original strand, 35940944 - 35941217
Alignment:
Q  188 atgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataaagaaggaataagaaattgtgtacgtgtaggatt 287  Q
    |||||||||| |||| || ||| |||||||||||||||||||||||||| ||||| | |   |||||||||||||||||| ||||||||| | |||||||    
T  35940944 atgataaaagattta-taattagccatggatcattagatacaaattatagcatattaacac-aataaagaaggaataagagattgtgtacctttaggatt 35941041  T
Q  288 taggattcatgaaggatagttgtcggaaggatgagagggatgactaccctcatttcgtttagcagcaaaatgttcagaat-gattaaccgtctgatagga 386  Q
    ||||||||||||||||||| ||    |||||||| ||||||||||||||||||| ||||||||| || |||||||||||| | ||||||||||||| | |    
T  35941042 taggattcatgaaggatagctg----aaggatgatagggatgactaccctcattccgtttagcatcagaatgttcagaatagtttaaccgtctgat-gaa 35941136  T
Q  387 tgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||| || ||||| |||||||||| |||||||    
T  35941137 tgacgtttaaatagctaaacggctgagggcagggacctctcattgggcttagcgaaatggtccaacccatcacagtccatt 35941217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 189 - 518
Target Start/End: Complemental strand, 22730150 - 22729806
Alignment:
Q  189 tgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataaagaaggaataagaaattgtgtacgtgtaggattt 288  Q
    ||||||||||| ||  |||||  ||| ||| ||||||||||||||||| |||||||| | ||| ||||||||||||||| ||||||||  | ||| |||     
T  22730150 tgataaaagttataggatttagtcatagatgattagatacaaattatagcatatcat-gataacaaagaaggaataagagattgtgtatatttagaatta 22730052  T
Q  289 aggattcatgaaggatagttgtcggaaggatgagagggatgactaccctcatttcgtttagcagcaaaatgttcagaat-gattaaccgtctgataggat 387  Q
    ||  || ||||||||||||||||  ||||||||||||||||| |||||||||| ||||||||| || |||||||||||| | |||||| || ||| ||||    
T  22730051 agt-ttgatgaaggatagttgtcacaaggatgagagggatgattaccctcattccgtttagcaccagaatgttcagaatagtttaaccttccgatgggat 22729953  T
Q  388 gacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt----------------atca 471  Q
    ||||||||||||||||||||||||||||||| |||||||||| || ||||||||| ||||| |||||||||| |||||||                ||||    
T  22729952 gacgtttaaatagctaaacggctgagggcagggacctctcattggacttagctaaatggtccaacccatcacagtccatttagaaagaatagcccgatca 22729853  T
Q  472 ctcatattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    | ||||||||||||||||||||||| |||||||||||||||||||||    
T  22729852 cacatattcatcaactaattagtgcttaacacaatagatcataattt 22729806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 189 - 467
Target Start/End: Complemental strand, 11340141 - 11339865
Alignment:
Q  189 tgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataaagaaggaataa-gaaattgtgtacgtgtaggatt 287  Q
    |||||||||||||| | |||| |||||||||| ||||||||| |||| ||||||||||  |||||||||| |||||| |||||||||||| | ||  | |    
T  11340141 tgataaaagttttagtgtttagccatggatcactagatacaagttatgacatatcatcaataataaagaatgaataaagaaattgtgtactttta--aat 11340044  T
Q  288 taggattcatgaaggatagttgtcggaaggatgagagggatgactaccctcatttcgtttagcagcaaaatgttcagaat-gattaaccgtctgatagga 386  Q
    |||| || ||||||||||  | |  ||||||||||||||||||||||| ||||| |||||||||||| | ||||   ||| | |||||| ||||||  ||    
T  11340043 tagg-ttgatgaaggataactataagaaggatgagagggatgactacc-tcattccgtttagcagcagagtgtttgcaatagtttaaccttctgatgcga 11339946  T
Q  387 tgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    ||| |||||||||||||||||||||||||||| |||||||||| ||| |||||||| ||||| ||||||||||||||||||    
T  11339945 tgatgtttaaatagctaaacggctgagggcagggacctctcattgggtttagctaaatggtccaacccatcacggtccatt 11339865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 292 - 467
Target Start/End: Original strand, 36950050 - 36950231
Alignment:
Q  292 attcatgaaggatagttgtcggaaggatgagagggatgactaccctcatttcgtttagcagcaaaatgttcagaatgattaaccgtctgata------gg 385  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||| || |||||||||||| ||   | |  | ||       ||    
T  36950050 attcatgaaggatagctgtcagaaggatgagagggatgactaccctcatttcgtctagcaccagaatgttcagaataatgttcagaataatttaacaggg 36950149  T
Q  386 atgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| ||||||||||||||||||    
T  36950150 atgacgtttaaatagctaaacggctgagggcagggacctctcattgggcttagctaaatggtccaacccatcacggtccatt 36950231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 361 - 467
Target Start/End: Complemental strand, 43097592 - 43097486
Alignment:
Q  361 tcagaatgattaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacg 460  Q
    |||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||| |||| |||||||||||| ||||| ||| |||||||    
T  43097592 tcagaatgtttaaccgtctgatgggatgacatttaaatagctaaacggctgagggcagggacctttcattgggcttagctaaatggtccaactcatcacg 43097493  T
Q  461 gtccatt 467  Q
    || ||||    
T  43097492 gttcatt 43097486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 468 - 519
Target Start/End: Complemental strand, 10491219 - 10491168
Alignment:
Q  468 atcactcatattcatcaactaattagtgcctaacacaatagatcataatttg 519  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  10491219 atcactcatattcattaactaattagtgcctaacacaatagaccataatttg 10491168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 468 - 518
Target Start/End: Original strand, 36950248 - 36950298
Alignment:
Q  468 atcactcatattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    ||||| ||||||||||||||||||||||| |||||||||| | ||||||||    
T  36950248 atcacacatattcatcaactaattagtgcttaacacaataaaccataattt 36950298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 468 - 507
Target Start/End: Original strand, 35941234 - 35941273
Alignment:
Q  468 atcactcatattcatcaactaattagtgcctaacacaata 507  Q
    ||||| ||||||||||||||||||||||| ||||||||||    
T  35941234 atcacacatattcatcaactaattagtgcttaacacaata 35941273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 518
Target Start/End: Complemental strand, 43097469 - 43097419
Alignment:
Q  468 atcactcatattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    ||||| |||||||||||||||| |||||| |||| ||||||| ||||||||    
T  43097469 atcacacatattcatcaactaactagtgcttaactcaatagaccataattt 43097419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 4e-71; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 188 - 467
Target Start/End: Original strand, 17497331 - 17497610
Alignment:
Q  188 atgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataaagaaggaataagaaattgtgtacgtgtaggatt 287  Q
    ||||||||||||| |  |||||  ||||||||||||||||||||||||| |||||||     | |||||||||||||||| ||||||||| | || ||||    
T  17497331 atgataaaagtttaaggatttagtcatggatcattagatacaaattatagcatatcaatac-agtaaagaaggaataagagattgtgtacctttaagatt 17497429  T
Q  288 taggattcatgaaggatagttgtcggaaggatgagagggatgactaccctcatttcgtttagcagcaaaatgttcagaat-gattaaccgtctgatagga 386  Q
    ||||||||||||||||||| |||| ||||||||||| | ||||||||||||||| ||||||||| || |||||||| ||| || |||||||||||| |||    
T  17497430 taggattcatgaaggatagctgtcagaaggatgagaagaatgactaccctcattccgtttagcaccataatgttcaaaatagaataaccgtctgatggga 17497529  T
Q  387 tgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    ||||||||||||||||||||| |||||||||| |||||||||| ||| || ||||| ||||| ||||||||||||||||||    
T  17497530 tgacgtttaaatagctaaacgactgagggcagggacctctcattgggtttggctaaatggtccaacccatcacggtccatt 17497610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 189 - 467
Target Start/End: Original strand, 32037920 - 32038205
Alignment:
Q  189 tgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataa---agaaggaataagaaattgtgtacgt-gtagg 284  Q
    |||||||||||||| | |||| |||||||||| ||||||||||||||| ||||| ||||||| |||   ||||||||||||||||||||||| | ||| |    
T  32037920 tgataaaagttttagtgtttagccatggatcactagatacaaattatagcatattatcggtagtaacaaagaaggaataagaaattgtgtaccttgtatg 32038019  T
Q  285 atttaggattcatgaaggatag---ttgtcggaaggatgagagggatgactaccctcatttcgtttagcagcaaaat-gttcagaat-gattaaccgtct 379  Q
     |||||| ||||||||||| ||   ||||| ||||||||||||||||||||||||||||| ||| || || || ||  ||||||||| | ||||||||||    
T  32038020 -tttagg-ttcatgaaggacagctgttgtcagaaggatgagagggatgactaccctcattccgtgtaacaccagaagagttcagaatagtttaaccgtct 32038117  T
Q  380 gataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    ||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| ||||||||||||||||||    
T  32038118 gatgggatgacgtttaaatagctaaacggctgagggcagggacctctcattgggcttagctaaatggtccaacccatcacggtccatt 32038205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 189 - 467
Target Start/End: Complemental strand, 44626440 - 44626163
Alignment:
Q  189 tgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataaagaaggaataagaaattgtgtacgtgtaggattt 288  Q
    |||||||||||||| | |||| ||||| |||| ||||||||||||||| |||||||   ||||||||||| ||  |||||| | ||||| | | | |||     
T  44626440 tgataaaagttttagtttttagccatgaatcactagatacaaattatagcatatcagtagtaataaagaatgatgaagaaactatgtaccttttgaatt- 44626342  T
Q  289 aggattcatgaaggatagttgtcggaaggatgagagggatgactaccctcatttcgtttagcagcaaaatgttcagaat-gattaaccgtctgataggat 387  Q
    ||| || ||||||||||   ||| ||||||||||||||||||||||||||||| |||||||||    ||| |||||||| | |||||||||||||  |||    
T  44626341 agg-ttgatgaaggataaccgtcagaaggatgagagggatgactaccctcattccgtttagcactggaatattcagaatagtttaaccgtctgatgagat 44626243  T
Q  388 gacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||| ||||||||||||||||||    
T  44626242 gacgtttaaatagctaaacggctgaaggcagagacctctcattgggcttagctaaatggtccaacccatcacggtccatt 44626163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 189 - 467
Target Start/End: Original strand, 26005353 - 26005637
Alignment:
Q  189 tgataaaagttttaatatttaaccatggatcattagatacaaattataacatatca---tcggtaataaagaaggaataagaaattgtgtacgtg-tagg 284  Q
    |||||| |||||||  ||| | |||||||||| ||||||||| ||||| |||||||   || |||  ||||||||||||||||||| ||||| |  || |    
T  26005353 tgataatagttttaggattcagccatggatcagtagatacaagttatagcatatcagtatcagtatcaaagaaggaataagaaattatgtaccttatatg 26005452  T
Q  285 atttaggattcatgaaggatagttgtcggaaggatgagagggatgactaccctcatttcgtttagcagcaaaatgttca---gaat-gattaaccgtctg 380  Q
     |||||| ||||| || ||||| ||||  | ||||||||| |||||||||||||||| ||||||||| || ||||||||   |||| | |||||||| ||    
T  26005453 -tttagg-ttcataaatgatagctgtcacagggatgagagagatgactaccctcattccgtttagcaccagaatgttcataagaatagtttaaccgtatg 26005550  T
Q  381 ataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    || |||||||||||||||||||||||||||||||| || |||||||||| |||||||||||| ||||| |||||||||| |||||||    
T  26005551 atgggatgacgtttaaatagctaaacggctgagggtagggacctctcattgggcttagctaaatggtccaacccatcacagtccatt 26005637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 292 - 467
Target Start/End: Complemental strand, 38144096 - 38143918
Alignment:
Q  292 attcatgaaggatagttgtcggaaggatgagagggatgactaccctcatttcgtttagcagcaaaatgttcagaat-gattaaccgtctgataggatgac 390  Q
    ||||||||||||||| |||| ||||||||||||||||||||||| ||||| ||| ||||| |  |||||||||||| | |||||||| |||| ||||||     
T  38144096 attcatgaaggatagctgtcagaaggatgagagggatgactaccgtcattccgtctagcaccggaatgttcagaatagtttaaccgtatgatgggatgag 38143997  T
Q  391 gtttaaatagctaaacggctga--gggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    ||||||||||||||||||||||  |||||| |||||||||| |||||| | ||| ||||| ||||||||| ||| ||||    
T  38143996 gtttaaatagctaaacggctgagggggcagggacctctcattgggcttggataaatggtccaacccatcatggttcatt 38143918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 383 - 518
Target Start/End: Complemental strand, 1262444 - 1262293
Alignment:
Q  383 aggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt--------------- 467  Q
    |||||||||||||||| ||||||||||||||||||  || |||||||  ||||||||||| ||||||||| ||||||||||||||                   
T  1262444 aggatgacgtttaaatggctaaacggctgagggcatggatctctcattaggcttagctaaatggtcaaactcatcacggtccatttagaaagaatagccc 1262345  T
Q  468 -atcactcatattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
     ||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  1262344 aatcacacatattcatcaactaattagtgcttaacacaatagatcataattt 1262293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 313 - 467
Target Start/End: Original strand, 34548032 - 34548192
Alignment:
Q  313 gaaggatgagagggatgactaccctcatttcgtttagcagca----aaatgttcagaa-tgattaaccgtctgatagg--atgacgtttaaatagctaaa 405  Q
    ||||||||||||||||| ||||| ||||| ||||||||| ||     ||||||||||| || |||||||||||||  |  ||||||||| ||||||||||    
T  34548032 gaaggatgagagggatgtctaccttcattccgtttagcaccagaatgaatgttcagaattgtttaaccgtctgatgcgatatgacgttt-aatagctaaa 34548130  T
Q  406 cggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    ||||||||||||  |||||||||| | |||||||||| ||||| || |||||||||||||||    
T  34548131 cggctgagggcaaggacctctcattgagcttagctaaatggtctaatccatcacggtccatt 34548192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 189 - 437
Target Start/End: Original strand, 45265965 - 45266201
Alignment:
Q  189 tgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataaagaaggaataagaaattgtgtacgtgtaggattt 288  Q
    |||||||||||||| |||||| |||||||||||||||||||||||| | |||||||     || ||||||||||||||| ||||||||| | |  ||  |    
T  45265965 tgataaaagttttagtatttagccatggatcattagatacaaattacagcatatcaaa---aacaaagaaggaataagagattgtgtaccttt--gaact 45266059  T
Q  289 aggattcatgaaggatagttgtcggaaggatgagagggatgactaccctcatttcgtttagc--agcaaaatgttcagaat-gattaaccgtctgatagg 385  Q
     || || ||||| ||||  |||| |||||||||         ||||| ||||| ||||||||  || | |||||||| ||| | ||||||||||||| |     
T  45266060 tggtttgatgaaagataactgtcagaaggatga---------ctacc-tcattccgtttagcgcagaagaatgttcaaaatagtttaaccgtctgatgga 45266149  T
Q  386 atgacgtttaaatagctaaacggctgagggcagagacctctcatcgggctta 437  Q
    |||||||||||||||||||||| |||||||||| || ||||||| |||||||    
T  45266150 atgacgtttaaatagctaaacgactgagggcagtgatctctcattgggctta 45266201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 358 - 467
Target Start/End: Complemental strand, 39517492 - 39517382
Alignment:
Q  358 tgttcagaatgattaaccgtctgatagga-tgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccat 456  Q
    ||||||||||| ||||||||||||| ||| ||| ||||||||||||||||| ||||  ||||||||||||||| |  || |||||| | |||||||||||    
T  39517492 tgttcagaatgcttaaccgtctgatgggaatgatgtttaaatagctaaacgactgaaagcagagacctctcattgaactcagctaaattgtcaaacccat 39517393  T
Q  457 cacggtccatt 467  Q
     || |||||||    
T  39517392 tacagtccatt 39517382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 358 - 418
Target Start/End: Complemental strand, 18324998 - 18324938
Alignment:
Q  358 tgttcagaatgattaaccgtctgataggatgacgtttaaatagctaaacggctgagggcag 418  Q
    ||||||||||| ||||||||||||| ||||||||||||||||| |||||| ||||||||||    
T  18324998 tgttcagaatgtttaaccgtctgatgggatgacgtttaaatagttaaacgactgagggcag 18324938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 292 - 418
Target Start/End: Complemental strand, 38151156 - 38151017
Alignment:
Q  292 attcatgaaggatagttgtcggaaggatgagagggatgactaccctcatttcgtttagcagcaaaatgttcagaa-------------tgattaaccgtc 378  Q
    ||||||||||||||| |||| ||||||||||| | ||||||||||||||| ||| ||||| |  |||||||||||              | |||||||||    
T  38151156 attcatgaaggatagctgtcagaaggatgagatgaatgactaccctcattccgtctagcaccggaatgttcagaagaatgttcataatagtttaaccgtc 38151057  T
Q  379 tgataggatgacgtttaaatagctaaacggctgagggcag 418  Q
    |||| || ||||||||||||||||||||| ||||||||||    
T  38151056 tgatggggtgacgtttaaatagctaaacgactgagggcag 38151017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 277
Target Start/End: Complemental strand, 18325174 - 18325086
Alignment:
Q  189 tgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataaagaaggaataagaaattgtgtac 277  Q
    ||||||||| ||||  ||||| |||||||| ||||||||||| ||||| ||||||||| |||| ||| || ||| |||||||| |||||    
T  18325174 tgataaaagatttaggatttagccatggattattagatacaagttatagcatatcatcagtaacaaataaagaagaagaaattatgtac 18325086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Complemental strand, 27184 - 27146
Alignment:
Q  313 gaaggatgagagggatgactaccctcatttcgtttagca 351  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  27184 gaagaatgagagggatgactaccctcatttcgtttagca 27146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 476 - 518
Target Start/End: Complemental strand, 18324809 - 18324767
Alignment:
Q  476 tattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    ||||||||||||||||||||| |||||||||||| ||||||||    
T  18324809 tattcatcaactaattagtgcttaacacaatagaccataattt 18324767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 274
Target Start/End: Original strand, 34547926 - 34548009
Alignment:
Q  189 tgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataaagaaggaataagaaattgtg 274  Q
    ||||||||||||||  ||||   ||||||||||||||||||||||||| ||||||||  | || |||||||||| |||| ||||||    
T  34547926 tgataaaagttttaggattttgacatggatcattagatacaaattatagcatatcat--gcaacaaagaaggaacaagagattgtg 34548009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 468 - 517
Target Start/End: Complemental strand, 39517365 - 39517316
Alignment:
Q  468 atcactcatattcatcaactaattagtgcctaacacaatagatcataatt 517  Q
    ||||| |||||||||| |||||||||||| |||||||||| |||||||||    
T  39517365 atcacacatattcatcgactaattagtgcttaacacaatatatcataatt 39517316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 225 - 277
Target Start/End: Complemental strand, 1262602 - 1262550
Alignment:
Q  225 atacaaattataacatatcatcggtaataaagaaggaataagaaattgtgtac 277  Q
    |||||| ||||| |||||||| | |||||||||||||||||||| ||||||||    
T  1262602 atacaagttatagcatatcattgataataaagaaggaataagaatttgtgtac 1262550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 38151276 - 38151220
Alignment:
Q  189 tgataaaag-ttttaatatttaaccatggatcattagatacaaattataacatatca 244  Q
    ||||||||| ||||| | |||| |||||||||||||||||||||||||| |||||||    
T  38151276 tgataaaagattttagtgtttagccatggatcattagatacaaattatagcatatca 38151220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 474 - 518
Target Start/End: Complemental strand, 44626140 - 44626096
Alignment:
Q  474 catattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    ||||||||||||||||||||||| |||||||||| | ||||||||    
T  44626140 catattcatcaactaattagtgcttaacacaataaaccataattt 44626096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 38144198 - 38144160
Alignment:
Q  206 tttaaccatggatcattagatacaaattataacatatca 244  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  38144198 tttagccatggatcattagatacaaattatagcatatca 38144160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 135; Significance: 6e-70; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 599 - 787
Target Start/End: Original strand, 32932554 - 32932741
Alignment:
Q  599 ccacttggaggaggaggtcatagctccttcatatagnnnnnnnnnnnnnnngtaaagacagcactaaatatcatgattgcaaggatatttaggtggttgg 698  Q
    ||||||||||||||||||||||||||||||||||||               ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32932554 ccacttggaggaggaggtcatagctccttcatatagaaaaaaaaaaaaaa-gtagagacagcactaaatatcatgattgcaaggatatttaggtggttgg 32932652  T
Q  699 ttatccaatttgaagtgagaaaatttatgtaaaccacccttaacccgacacatttcaagtcaaccaaaaaagggcacgtcgaaaaatgg 787  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32932653 ttatccaatttgaagtgagaaaatttatgtaaaccacccttaacccgacacatttcaagtcaaccaaaaaagggcacgtcgaaaaatgg 32932741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 189 - 467
Target Start/End: Complemental strand, 18338428 - 18338153
Alignment:
Q  189 tgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataaagaaggaataagaaattgtgtacgtgtaggattt 288  Q
    |||||||||||||| | |||| ||||||||||||||||||| |||||| |||||||  |  || |||||||| |||||| ||||||||| |  ||||||     
T  18338428 tgataaaagttttagtgtttagccatggatcattagatacagattatagcatatcaa-gacaacaaagaagggataagagattgtgtaccta-aggattc 18338331  T
Q  289 aggattcatgaaggatagttgtcggaaggatgagagggatgactaccctcatttcgtttagcagcaaaatg--ttcagaatgatt-aaccgtctgatagg 385  Q
        ||||| || ||||| |||  |||| |||||||||||||||||||||||| ||||||||| || ||    ||||||||| || ||||||||||| ||    
T  18338330 g---ttcataaatgatagatgtaagaag-atgagagggatgactaccctcattccgtttagcaccagaagaatttcagaatggtttaaccgtctgatggg 18338235  T
Q  386 atgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||  ||||||||||||||||||    
T  18338234 atgacgtttaaatagctaaacggctgagggcagggacctctcattgggcttagctaaatggttcaacccatcacggtccatt 18338153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 189 - 467
Target Start/End: Original strand, 7553236 - 7553515
Alignment:
Q  189 tgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataaagaaggaataagaaattgtgtacgtgta-ggatt 287  Q
    |||||||| ||||| | |||| ||||||||||||| |||||||||||| |||||||  |  || ||||||||||||||| ||||||||| | || |||||    
T  7553236 tgataaaaattttagtgtttagccatggatcattatatacaaattatagcatatcaa-gacaacaaagaaggaataagagattgtgtacctttaaggatt 7553334  T
Q  288 taggattcatgaaggatagttgtcggaaggatgagagggatgactaccctcatttcgtttagcagc---aaaatgttcagaat-gattaaccgtctgata 383  Q
     |   |||| ||| ||||| ||||  |||||||||||||||||||||||||||| ||||||||| |   |||||||||||||| | |||||||||||||     
T  7553335 ca---ttcacgaaagatagctgtctaaaggatgagagggatgactaccctcattccgtttagcacctgaaaaatgttcagaatagtttaaccgtctgatg 7553431  T
Q  384 ggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    |||||| ||||||||| ||||||||| |||||||| ||| |||||  ||| |||||||| ||||| ||||||||||| ||||||    
T  7553432 ggatgatgtttaaataactaaacggccgagggcagggacttctcactgggtttagctaaatggtccaacccatcacgatccatt 7553515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 313 - 467
Target Start/End: Complemental strand, 9972972 - 9972814
Alignment:
Q  313 gaaggatgagagggatgactaccctcatttcgtttagcagcaaaatgttcagaatgat----taaccgtctgataggatgacgtttaaatagctaaacgg 408  Q
    ||||||||||||||||||||||||||||| ||||||||| || |||||||||||  ||    |||||||||||| |||| ||||||||||||||||||||    
T  9972972 gaaggatgagagggatgactaccctcattccgtttagcaccagaatgttcagaagaatagtttaaccgtctgatgggataacgtttaaatagctaaacgg 9972873  T
Q  409 ctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    |||||||||| |||||||||| |||||||||||| ||||  ||||||||||||||||||    
T  9972872 ctgagggcagggacctctcattgggcttagctaaatggttcaacccatcacggtccatt 9972814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 315 - 467
Target Start/End: Original strand, 23848515 - 23848668
Alignment:
Q  315 aggatgagagggatgactaccctcatttcgtttagcagcaaaatgttcagaat-gattaaccgtctgataggatgacgtttaaatagctaaacggctgag 413  Q
    |||||||||||||||||| | |||||| | ||||||| || |||||||||||| | |||||| |||||| ||||||||||||||||||||||||||| ||    
T  23848515 aggatgagagggatgactgcgctcattccctttagcaccagaatgttcagaatagtttaaccatctgatgggatgacgtttaaatagctaaacggctaag 23848614  T
Q  414 ggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    ||||| |||||||||| |||||||||||| ||||  ||||||||||||||||||    
T  23848615 ggcagggacctctcattgggcttagctaaatggttcaacccatcacggtccatt 23848668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 296 - 467
Target Start/End: Complemental strand, 27101714 - 27101542
Alignment:
Q  296 atgaaggatagttgtcggaaggatgagagggatgactaccctcatttcgtttagcagcaaaatgttcagaat-gattaaccgtctgataggatgacgttt 394  Q
    |||||||||| || || ||||||||||||||||||||||||||||| |||||| || || |||||||||| | | ||||||||||||| |||| | ||||    
T  27101714 atgaaggataattatcagaaggatgagagggatgactaccctcattccgtttaacaccagaatgttcagagtagtttaaccgtctgatgggataaagttt 27101615  T
Q  395 aaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    ||||||||||||| |||||||||| ||| |||||| ||||||| |||| ||||  ||||||||||||||||||    
T  27101614 aaatagctaaacgactgagggcagggacatctcattgggcttaactaaatggttcaacccatcacggtccatt 27101542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 296 - 467
Target Start/End: Complemental strand, 27143536 - 27143364
Alignment:
Q  296 atgaaggatagttgtcggaaggatgagagggatgactaccctcatttcgtttagcagcaaaatgttcagaat-gattaaccgtctgataggatgacgttt 394  Q
    |||||||||| || || ||||||||||||||||||||||||||||| |||||| || || |||||||||| | | ||||||||||||| |||| | ||||    
T  27143536 atgaaggataattatcagaaggatgagagggatgactaccctcattccgtttaacaccagaatgttcagagtagtttaaccgtctgatgggataaagttt 27143437  T
Q  395 aaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    ||||||||||||| |||||||||| ||| |||||| ||||||| |||| ||||  ||||||||||||||||||    
T  27143436 aaatagctaaacgactgagggcagggacatctcattgggcttaactaaatggttcaacccatcacggtccatt 27143364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 313 - 459
Target Start/End: Original strand, 32932258 - 32932405
Alignment:
Q  313 gaaggatgagagggatgactaccctcatttcgtttagcagcaaaatgttcagaat-gattaaccgtctgataggatgacgtttaaatagctaaacggctg 411  Q
    |||| |||||||||||||||||||||||| | ||||||| ||||||||||| | | | ||||||||||||| ||||||||||||||||| |||||| |||    
T  32932258 gaagaatgagagggatgactaccctcattccatttagcaccaaaatgttcatagtagtttaaccgtctgatgggatgacgtttaaatagttaaacgactg 32932357  T
Q  412 agggcagagacctctcatcgggcttagctaattggtcaaacccatcac 459  Q
    |||||||||| ||||||| ||||| | |||| ||||| ||| ||||||    
T  32932358 agggcagagatctctcattgggctcaactaaatggtccaacacatcac 32932405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 370 - 467
Target Start/End: Complemental strand, 19543598 - 19543501
Alignment:
Q  370 ttaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||  ||||||| ||| ||||| |||||||||||| |||||    
T  19543598 ttaaccgtctgataggatgacgtttaaatagctaaacggctaagggcagggacctctcattcggcttagttaaatggtccaacccatcacggcccatt 19543501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 370 - 467
Target Start/End: Original strand, 22958085 - 22958182
Alignment:
Q  370 ttaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    |||||| |||||| ||||||||||||||||||||| ||||||||||||| ||| |||||| ||||||| |||| ||||  ||||||||||||||||||    
T  22958085 ttaaccatctgatgggatgacgtttaaatagctaatcggctgagggcagggacttctcattgggcttaactaaatggttcaacccatcacggtccatt 22958182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 370 - 467
Target Start/End: Complemental strand, 23830307 - 23830210
Alignment:
Q  370 ttaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    |||||| |||||| ||||||||||||||||||||| ||||||||||||| ||| |||||| ||||||| |||| ||||  ||||||||||||||||||    
T  23830307 ttaaccatctgatgggatgacgtttaaatagctaatcggctgagggcagggacttctcattgggcttaactaaatggttcaacccatcacggtccatt 23830210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 661 - 786
Target Start/End: Original strand, 32921339 - 32921454
Alignment:
Q  661 actaaatatcatgattgcaaggatatttaggtggttggttatccaatttgaagtgagaaaatttatgtaaaccacccttaacccgacacatttcaagtca 760  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||         ||||| ||||| ||| ||||||||| ||||||    
T  32921339 actaaatatcatgattgcaaggatattttggtggttggttatccaatttgaattgagaa---------aaaccgcccttgaccggacacatttgaagtca 32921429  T
Q  761 accaaaaaagggcacgtcgaaaaatg 786  Q
    ||| |||||| |||||||||||||||    
T  32921430 acc-aaaaagagcacgtcgaaaaatg 32921454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 262
Target Start/End: Original strand, 28498183 - 28498256
Alignment:
Q  189 tgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataaagaaggaa 262  Q
    ||||||| |||||| |||||| |||||||||| |||||||||||||||  ||||||||  ||||||||||||||    
T  28498183 tgataaacgttttagtatttagccatggatcactagatacaaattatagtatatcatcaataataaagaaggaa 28498256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 262
Target Start/End: Original strand, 29810594 - 29810667
Alignment:
Q  189 tgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataaagaaggaa 262  Q
    ||||||| |||||| |||||| |||||||||| |||||||||||||||  ||||||||  ||||||||||||||    
T  29810594 tgataaacgttttagtatttagccatggatcactagatacaaattatagtatatcatcaataataaagaaggaa 29810667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 15121374 - 15121429
Alignment:
Q  222 tagatacaaattataacatatcatcggtaataaagaaggaataagaaattgtgtac 277  Q
    ||||||||||||||||||| | ||  |||||||||||||||||| |||||||||||    
T  15121374 tagatacaaattataacatgtaattagtaataaagaaggaataaaaaattgtgtac 15121429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 468 - 518
Target Start/End: Complemental strand, 18338136 - 18338086
Alignment:
Q  468 atcactcatattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    ||||| ||||||||| ||||||||||||| |||||||||||| ||||||||    
T  18338136 atcacacatattcataaactaattagtgcttaacacaatagaccataattt 18338086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 315 - 367
Target Start/End: Original strand, 22958005 - 22958057
Alignment:
Q  315 aggatgagagggatgactaccctcatttcgtttagcagcaaaatgttcagaat 367  Q
    |||||||||||||||| |||||||||| | ||||||| || ||||||||||||    
T  22958005 aggatgagagggatgattaccctcattccctttagcaccagaatgttcagaat 22958057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 315 - 367
Target Start/End: Complemental strand, 23830387 - 23830335
Alignment:
Q  315 aggatgagagggatgactaccctcatttcgtttagcagcaaaatgttcagaat 367  Q
    |||||||||||||||| |||||||||| | ||||||| || ||||||||||||    
T  23830387 aggatgagagggatgattaccctcattccctttagcaccagaatgttcagaat 23830335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 365 - 424
Target Start/End: Original strand, 15121527 - 15121586
Alignment:
Q  365 aatgattaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacct 424  Q
    |||| |||||||| ||||  |||||| ||||||||| ||||| |||||||||||||||||    
T  15121527 aatgcttaaccgtatgatgagatgacatttaaatagttaaactgctgagggcagagacct 15121586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 518
Target Start/End: Original strand, 23848685 - 23848735
Alignment:
Q  468 atcactcatattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    ||||| |||||||||||| |||||||||| | |||||||||| ||||||||    
T  23848685 atcacacatattcatcaattaattagtgctttacacaatagaccataattt 23848735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 32932181 - 32932234
Alignment:
Q  222 tagatacaaattataacatatcatcggtaataaagaa-ggaataagaaattgtgtac 277  Q
    ||||||||| |||||||||||||   ||||||||||| |||||||||||||||||||    
T  32932181 tagatacaagttataacatatca---gtaataaagaagggaataagaaattgtgtac 32932234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 518
Target Start/End: Original strand, 32932430 - 32932480
Alignment:
Q  468 atcactcatattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    ||||| |||||||||||| |||||||||  |||||||||||| ||||||||    
T  32932430 atcacacatattcatcaattaattagtgtttaacacaatagaccataattt 32932480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 4e-65; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 205 - 518
Target Start/End: Original strand, 26450758 - 26451081
Alignment:
Q  205 atttaaccatggatcattagatacaaattataacatatcatcggtaataaagaaggaataa-gaaattgtgtacgtgtaggatttaggattcatgaagga 303  Q
    ||||| |||||||||| || |||||||||||| |||||||||  |||||||||| |||||| |||||||||||| | |  || ||||| || ||||||||    
T  26450758 atttagccatggatcactatatacaaattatagcatatcatcaataataaagaatgaataaagaaattgtgtaccttt--gaattagg-ttgatgaagga 26450854  T
Q  304 tagttgtcggaaggatgagagggatgactaccctcatttcgtttagcagcaaaatgttcagaatgattaaccgtctgataggatgacgtttaaatagcta 403  Q
    ||  ||||  |||||| ||||||||||||||||||||| |||||||||| | | ||||||||||| ||||||||||||| ||||||||||||||||||||    
T  26450855 taactgtcaaaaggataagagggatgactaccctcattccgtttagcagtagagtgttcagaatgcttaaccgtctgatgggatgacgtttaaatagcta 26450954  T
Q  404 aacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt------------atcactcatattcatcaactaatt 491  Q
    |||||||||||| || |||||||||| |||||||||||| ||||| |||||||||| |||||||            |||||  |||||||||| ||||||    
T  26450955 aacggctgagggaagggacctctcattgggcttagctaaatggtccaacccatcacagtccatttagaatagcccaatcacaaatattcatcatctaatt 26451054  T
Q  492 agtgcctaacacaatagatcataattt 518  Q
    ||||| |||||||||||| ||||||||    
T  26451055 agtgcttaacacaatagaccataattt 26451081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 189 - 463
Target Start/End: Complemental strand, 32517442 - 32517162
Alignment:
Q  189 tgataaaagttttaatatttaaccatggatcattagatacaaattataacatatca---tcggtaataaagaaggaataagaaattgtgta-cgtgtagg 284  Q
    ||||||||||||||  ||| | |||||||||| ||||||||| ||||| ||||| |   || |||  ||||||||||||||||||| | || | | || |    
T  32517442 tgataaaagttttaggattcagccatggatcaatagatacaagttatagcatatgagtatcagtatcaaagaaggaataagaaattatatatcttctatg 32517343  T
Q  285 atttaggattcatgaaggatagttgtcggaaggatgagagggatgactaccctcatttcgtttagcagcaaaatgttcagaatgat----taaccgtctg 380  Q
     |||||| || |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| || |||||||||||  ||    |||||||||     
T  32517342 -tttaggttt-atgaaggatagttgtcagaaggatgagagggatgactaccctcattccgtttagcaccagaatgttcagaagaatactttaaccgtcta 32517245  T
Q  381 ataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtc 463  Q
    || ||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||| ||||| ||||||||||||||    
T  32517244 atgggatgacgtttaaatagctaaacggctgagggcatggacctctcattgggcttagctaaatggtccaacccatcacggtc 32517162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 187 - 467
Target Start/End: Original strand, 267556 - 267842
Alignment:
Q  187 gatgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataaagaag----gaataagaaattgtgtacgt-gt 281  Q
    |||||||||||||| |   |||| |||||||||| |||||||| |||||| ||||||||  ||| |||  ||     |||||||||||||||||| | ||    
T  267556 gatgataaaagtttaagggtttagccatggatcactagatacagattatagcatatcataagtagtaattaacaaatgaataagaaattgtgtaccttgt 267655  T
Q  282 aggatttaggattcatgaaggatagttgtcgga--aggatgagagggatgactaccctcatttcgtttagcagcaaaatgttcagaat-gattaaccgtc 378  Q
    | | |||||| |||||||||||||  |||| ||  ||  || |||| ||||||||||||||| ||||||||| || |||||||||||| | ||||||||     
T  267656 atg-tttagg-ttcatgaaggataactgtcagatgagagtgggaggaatgactaccctcattccgtttagcaccagaatgttcagaatagtttaaccgtt 267753  T
Q  379 tgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||    
T  267754 tgatgggatgacgtttaaatagctaaacggctgagggcagggacctctcattgggcttagctaaatggtcaaacccatcacggtccatt 267842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 206 - 467
Target Start/End: Complemental strand, 48853908 - 48853640
Alignment:
Q  206 tttaaccatggatcattagatacaaattataacatatcatcggtaataaa---gaaggaataagaaattgtgtacgt-gtaggatttaggattcatgaag 301  Q
    |||| |||| ||||| ||||||||||||||| ||||||||| ||| |||    |||||||||||||||||| ||| | ||| | |||||| ||||||||     
T  48853908 tttagccatagatcactagatacaaattatagcatatcatcagtagtaacaaggaaggaataagaaattgtctaccttgtatg-tttagg-ttcatgaat 48853811  T
Q  302 gatagttgtcg---gaaggatgagagggatgactaccctcatttcgtttagcagcaaaatg-ttcagaat-gattaaccgtctgataggatgacgtttaa 396  Q
    ||||||||| |   ||||||||||||||||||||||||||||| ||| ||||| || ||   |||| ||| | ||||||||||||| |||||||||||||    
T  48853810 gatagttgttgtcagaaggatgagagggatgactaccctcattccgtgtagcaccagaagaattcacaatagtttaaccgtctgatgggatgacgtttaa 48853711  T
Q  397 atagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    |||| ||||||||||||||||| |||||||||| |||||||||||| ||||| ||||||||||||||||||    
T  48853710 atagttaaacggctgagggcagggacctctcattgggcttagctaaatggtccaacccatcacggtccatt 48853640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 370 - 467
Target Start/End: Original strand, 29148717 - 29148813
Alignment:
Q  370 ttaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||| || || |||| ||||| |||||||    
T  29148717 ttaaacgtctgatgggatgacgtttaaatagctaaacggctgagggcag-gacctctcattggacttagctaaatgttccaaccaatcaccgtccatt 29148813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 358 - 442
Target Start/End: Original strand, 40771630 - 40771714
Alignment:
Q  358 tgttcagaatgattaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaa 442  Q
    |||||| |||| ||||  ||||||| | |||| |||||||||||||||||||||||||||  |||||||||| | ||||||||||    
T  40771630 tgttcataatgcttaattgtctgatggaatgatgtttaaatagctaaacggctgagggcaaggacctctcattgagcttagctaa 40771714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 358 - 416
Target Start/End: Complemental strand, 40771361 - 40771303
Alignment:
Q  358 tgttcagaatgattaaccgtctgataggatgacgtttaaatagctaaacggctgagggc 416  Q
    |||| |||||| ||||||||||||| ||||||||||||||||||||||| ||| |||||    
T  40771361 tgtttagaatgcttaaccgtctgatgggatgacgtttaaatagctaaaccgctaagggc 40771303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 475 - 518
Target Start/End: Complemental strand, 5172886 - 5172843
Alignment:
Q  475 atattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    |||||||||||||||||||||| ||| |||||||||||||||||    
T  5172886 atattcatcaactaattagtgcttaatacaatagatcataattt 5172843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 361 - 463
Target Start/End: Complemental strand, 5173016 - 5172914
Alignment:
Q  361 tcagaatgattaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacg 460  Q
    |||||||| |||  ||||| || ||||||||||||||||||||||||| ||||||||   ||||||||| | |||||| ||| | ||  ||||||||| |    
T  5173016 tcagaatgcttagtcgtctaatgggatgacgtttaaatagctaaacggttgagggcaagaacctctcattgtgcttaggtaaatagttcaacccatcatg 5172917  T
Q  461 gtc 463  Q
    |||    
T  5172916 gtc 5172914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 468 - 518
Target Start/End: Complemental strand, 40771261 - 40771211
Alignment:
Q  468 atcactcatattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    ||||| ||||||||||||||||||||||  |||||||||||| ||||||||    
T  40771261 atcacacatattcatcaactaattagtgtttaacacaatagaccataattt 40771211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 217 - 275
Target Start/End: Original strand, 40771481 - 40771539
Alignment:
Q  217 atcattagatacaaattataacatatcatcggtaataaagaaggaataagaaattgtgt 275  Q
    |||| ||||||||||||||| ||||||||  |||| |||| ||||||||||||||||||    
T  40771481 atcactagatacaaattatagcatatcattagtaacaaagcaggaataagaaattgtgt 40771539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 474 - 518
Target Start/End: Original strand, 267865 - 267909
Alignment:
Q  474 catattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    ||||||||||||||||||||||| |||| ||||||| ||||||||    
T  267865 catattcatcaactaattagtgcttaacgcaatagaccataattt 267909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 474 - 518
Target Start/End: Original strand, 278932 - 278976
Alignment:
Q  474 catattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    ||||||||||||||||||||||| |||| ||||||| ||||||||    
T  278932 catattcatcaactaattagtgcttaacgcaatagaccataattt 278976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 384 - 467
Target Start/End: Original strand, 278836 - 278909
Alignment:
Q  384 ggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    ||||||||||||||||||||||||||||| ||||| |||||         ||||||||| ||||| ||||||||||||||||||    
T  278836 ggatgacgtttaaatagctaaacggctga-ggcagggacct---------cttagctaaatggtccaacccatcacggtccatt 278909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 6e-64; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 238 - 518
Target Start/End: Complemental strand, 39574764 - 39574468
Alignment:
Q  238 catatcatcggtaataaagaaggaataagaaattgtgtacgtgtaggatttaggattcatgaaggatagttgtcggaaggatgagagggatgactaccct 337  Q
    |||||||||| ||| ||||||||||||||||||||||||| | || ||| ||||||||||||||||||  |||| |||||||||||||||||| || |||    
T  39574764 catatcatcgataacaaagaaggaataagaaattgtgtacctttaagatgtaggattcatgaaggataactgtcagaaggatgagagggatgattatcct 39574665  T
Q  338 catttcgtttagcagcaaaatgttcagaat-gattaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggctt 436  Q
    |||| ||||||||| || | ||||| || | | ||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||| ||||||    
T  39574664 cattccgtttagcaccatattgttc-gagtagtttaaccgtctgatgggatgacgtttaaatagctaaacggctaagggcagggacctctcattgggctt 39574566  T
Q  437 agctaattggtcaaacccatcacggtccatt----------------atcactcatattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    |||||| ||||| ||||||||||||||||||                ||||| ||||||||||||||||||||||| |||||||||||| ||||||||    
T  39574565 agctaaatggtccaacccatcacggtccatttagaaagaatagcccaatcacacatattcatcaactaattagtgcttaacacaatagaccataattt 39574468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 189 - 456
Target Start/End: Complemental strand, 47858433 - 47858159
Alignment:
Q  189 tgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataa---agaaggaataagaaattgtgtacgt-gtagg 284  Q
    |||||||||||||| | ||||  ||||||||||||||||||||||||||||||||||| ||| |||   ||||||||||||||||||||||| | ||| |    
T  47858433 tgataaaagttttagtgtttaggcatggatcattagatacaaattataacatatcatcagtagtaacaaagaaggaataagaaattgtgtaccttgtatg 47858334  T
Q  285 atttaggattcatgaaggatagttgtcg---gaaggatgagagggatgactaccctcatttcgtttagcagca-aaatgttcagaat-gattaaccgtct 379  Q
     |||||| |||||||||||||||||| |   ||||||||||||||||||| |||||||||  || |||||  | ||   |||| ||| | |||||| |||    
T  47858333 -tttagg-ttcatgaaggatagttgttgttggaaggatgagagggatgaccaccctcattcggtatagcactagaagaattcacaatagtttaaccatct 47858236  T
Q  380 gataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccat 456  Q
    ||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| |||||||    
T  47858235 gatgggatgacgtttaaatagctaaacggctgagggcagggacctctcattgggcttagctaaatggtccaacccat 47858159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 240 - 467
Target Start/End: Complemental strand, 39581311 - 39581084
Alignment:
Q  240 tatcatcggtaataaagaaggaataagaaattgtgtacgtgtaggatttaggattcatgaaggatagttgtcggaaggatgagagggatgactaccctca 339  Q
    |||||||| ||| ||||||||||||||||||||||||| | || |||  |||||||||||||||||  ||||  ||||||||||||||||||| ||||||    
T  39581311 tatcatcgataacaaagaaggaataagaaattgtgtacctttaagatgcaggattcatgaaggataactgtcacaaggatgagagggatgacttccctca 39581212  T
Q  340 tttcgtttagcagcaaaatgttc-agaatgattaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttag 438  Q
    ||  |||||||| || ||||||| || | | |||||||| |||| |||||||||||||||||||||||| |||||||||| |||||||||| ||||||||    
T  39581211 ttctgtttagcaccataatgttcgagta-gtttaaccgtttgattggatgacgtttaaatagctaaacgactgagggcagggacctctcattgggcttag 39581113  T
Q  439 ctaattggtcaaacccatcacggtccatt 467  Q
    |||| | ||  ||| ||||||||||||||    
T  39581112 ctaaattgttcaactcatcacggtccatt 39581084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 361 - 467
Target Start/End: Complemental strand, 41141020 - 41140914
Alignment:
Q  361 tcagaatgattaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacg 460  Q
    ||||||||  ||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||    
T  41141020 tcagaatgtctaaccgtctaatgggatgacgtttaaatagctaaacggctgagggcagggacctctcatcaggcttagctaaatggtccaacccatcacg 41140921  T
Q  461 gtccatt 467  Q
    |||||||    
T  41140920 gtccatt 41140914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 361 - 518
Target Start/End: Original strand, 24515347 - 24515520
Alignment:
Q  361 tcagaatgattaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacg 460  Q
    |||||||| |||||||| | || |||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||| ||||| |||||||||||    
T  24515347 tcagaatgtttaaccgtattatgggatgacgtttaaatagctaaatggctgagggcagagacctctcattggacttagctaaatggtccaacccatcacg 24515446  T
Q  461 gtccatt----------------atcactcatattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    |||||||                ||||| ||||||||||||||||||||||| |||||||||||| ||||||||    
T  24515447 gtccatttagaaagaatagcccgatcacacatattcatcaactaattagtgcttaacacaatagaccataattt 24515520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 370 - 467
Target Start/End: Original strand, 9764979 - 9765075
Alignment:
Q  370 ttaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| ||||||||||||||||||    
T  9764979 ttaaccgtc-gatgggatgacgtttaaatagctaaacggctgagggcagggacctctcattgggcttagctaaatggtccaacccatcacggtccatt 9765075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 370 - 467
Target Start/End: Original strand, 9758363 - 9758460
Alignment:
Q  370 ttaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    ||||||||||||| |||||||||||||||||||||| |||||| ||||| |||||||||| |||||||||||| || || ||||||||||||||||||    
T  9758363 ttaaccgtctgatgggatgacgtttaaatagctaaatggctgaaggcagtgacctctcattgggcttagctaaatgttccaacccatcacggtccatt 9758460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 370 - 467
Target Start/End: Original strand, 12017733 - 12017828
Alignment:
Q  370 ttaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    ||||| ||||||| ||||||||||||||||| ||||||||||||||||| |||  || || || ||||||||| ||||| ||| ||||||||||||||    
T  12017733 ttaactgtctgatgggatgacgtttaaatagttaaacggctgagggcagggac--cttattggacttagctaaatggtccaactcatcacggtccatt 12017828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 277
Target Start/End: Original strand, 12017543 - 12017632
Alignment:
Q  189 tgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataaag-aaggaataagaaattgtgtac 277  Q
    |||||||||||||| ||||||  ||| ||||| |||||| || ||||| ||||||||||||| ||||| ||||||||||||||| |||||    
T  12017543 tgataaaagttttagtatttagtcatagatcactagatataagttatagcatatcatcggtagtaaagaaaggaataagaaattatgtac 12017632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 474 - 518
Target Start/End: Original strand, 12017852 - 12017896
Alignment:
Q  474 catattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    ||||||||||||||||||||||  |||||||||||||||||||||    
T  12017852 catattcatcaactaattagtgtttaacacaatagatcataattt 12017896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 364 - 405
Target Start/End: Original strand, 24523138 - 24523179
Alignment:
Q  364 gaatgattaaccgtctgataggatgacgtttaaatagctaaa 405  Q
    ||||| ||||||||||||| ||||||||||||||||||||||    
T  24523138 gaatgtttaaccgtctgatgggatgacgtttaaatagctaaa 24523179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 468 - 516
Target Start/End: Original strand, 24523220 - 24523268
Alignment:
Q  468 atcactcatattcatcaactaattagtgcctaacacaatagatcataat 516  Q
    ||||| |||||||||||| |||||||||| |||||||||||| ||||||    
T  24523220 atcacacatattcatcaattaattagtgcttaacacaatagaccataat 24523268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 24515180 - 24515235
Alignment:
Q  189 tgataaaagttttaatatttaaccatggatcattagatacaaattataacatatca 244  Q
    |||||||||||||| |||| | |||||||||| ||||||||| ||||| |||||||    
T  24515180 tgataaaagttttagtattcagccatggatcactagatacaagttatagcatatca 24515235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 24522962 - 24523017
Alignment:
Q  189 tgataaaagttttaatatttaaccatggatcattagatacaaattataacatatca 244  Q
    |||||||||||||| |||| | |||||||||| ||||||||| ||||| |||||||    
T  24522962 tgataaaagttttagtattcagccatggatcactagatacaagttatagcatatca 24523017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 475 - 518
Target Start/End: Complemental strand, 39580527 - 39580484
Alignment:
Q  475 atattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    |||||||||||||||||||| | |||||||||||| ||||||||    
T  39580527 atattcatcaactaattagtacttaacacaatagaccataattt 39580484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 116; Significance: 1e-58; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 189 - 467
Target Start/End: Complemental strand, 60625 - 60339
Alignment:
Q  189 tgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataaagaaggaataagaaattgtgtacgtgta-ggatt 287  Q
    ||||||||||||||  ||||| |||||||||||||||||||||||||| |||||||  |  || |||||||| |||||| ||||||||| | || |||||    
T  60625 tgataaaagttttagaatttagccatggatcattagatacaaattatagcatatcaa-gacaacaaagaagggataagagattgtgtacctttaaggatt 60527  T
Q  288 taggattc----atgaaggatagttgtcggaaggatgagagggatgactaccctcatttcgttt--agcagcaaaat-gttcagaat-gattaaccgtct 379  Q
     |||||||    || |||||||| |||| |||||||||||||||||| |||||||||| ||| |  |||| || ||  ||||||||| | ||||||||||    
T  60526 aaggattcgttcataaaggatagctgtcagaaggatgagagggatgagtaccctcattccgtgtgtagcaccagaagagttcagaatagtttaaccgtct 60427  T
Q  380 gataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    ||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| ||||||||||||||||||    
T  60426 gatgggatgacgtttaaatagctaaacggctgagggcagggacctctcattgggcttagctaaatggtccaacccatcacggtccatt 60339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 189 - 467
Target Start/End: Complemental strand, 68101 - 67815
Alignment:
Q  189 tgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataaagaaggaataagaaattgtgtacgtgta-ggatt 287  Q
    ||||||||||||||  ||||| |||||||||||||||||||||||||| |||||||  |  || |||||||| |||||| ||||||||| | || |||||    
T  68101 tgataaaagttttagaatttagccatggatcattagatacaaattatagcatatcaa-gacaacaaagaagggataagagattgtgtacctttaaggatt 68003  T
Q  288 taggattc----atgaaggatagttgtcggaaggatgagagggatgactaccctcatttcgttt--agcagcaaaat-gttcagaat-gattaaccgtct 379  Q
     |||||||    || |||||||| |||| |||||||||||||||||| |||||||||| ||| |  |||| || ||  ||||||||| | ||||||||||    
T  68002 aaggattcgttcataaaggatagctgtcagaaggatgagagggatgagtaccctcattccgtgtgtagcaccagaagagttcagaatagtttaaccgtct 67903  T
Q  380 gataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    ||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| ||||||||||||||||||    
T  67902 gatgggatgacgtttaaatagctaaacggctgagggcagggacctctcattgggcttagctaaatggtccaacccatcacggtccatt 67815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 2e-57; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 212 - 467
Target Start/End: Complemental strand, 24138687 - 24138425
Alignment:
Q  212 catggatcattagatacaaattataacatatcatcggtaataaagaaggaataagaaattgtgtacgtgt-aggatttagga----ttcatgaaggatag 306  Q
    ||||||||| ||||||||||||||| ||||||||| |||| || ||| |||||||| ||||||||| | | |||||| ||||    ||||| ||||||||    
T  24138687 catggatcactagatacaaattatagcatatcatcagtaacaaggaaagaataagagattgtgtacctttaaggattaaggattcgttcataaaggatag 24138588  T
Q  307 ttgtcggaaggatgagagggatgactaccctcatttcgtttagcagca-aaatgttcagaat-gattaaccgtctgataggatgacgtttaaatagctaa 404  Q
    ||||| |||||||||||| |||||||||||||||| ||| ||||| || ||  |||||||||   ||||||||||||| |||||||||||||||||||||    
T  24138587 ttgtcagaaggatgagagagatgactaccctcattccgtgtagcaccagaagagttcagaatattttaaccgtctgatgggatgacgtttaaatagctaa 24138488  T
Q  405 acggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    |||||||||||||| |||||||||| || |||| |||| ||||| ||||||||||||||||||    
T  24138487 acggctgagggcagggacctctcattggacttaactaaatggtccaacccatcacggtccatt 24138425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 189 - 467
Target Start/End: Original strand, 15144088 - 15144363
Alignment:
Q  189 tgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataaagaaggaataagaaattgtgtacgtgtaggattt 288  Q
    |||||||||||| |   |||| |||||||| ||||||||||||||||| |||| ||     |  ||| ||||||||||| ||||||||  | ||||| ||    
T  15144088 tgataaaagtttaagagtttagccatggattattagatacaaattatagcatagcaatacaacaaaaaaaggaataagagattgtgtatttttaggagtt 15144187  T
Q  289 aggattcatgaaggatagttgtcggaaggatgagagggatgactaccctcatttcgtttagcagcaaaatgttcagaat-gattaaccgtctgataggat 387  Q
    | |||||||||||||||| ||    |||||||||| ||||||||||||||||| ||||||||| || |||||| ||||| | |||||| |||||| ||||    
T  15144188 aagattcatgaaggatagctg----aaggatgagacggatgactaccctcattccgtttagcaccagaatgtttagaatagtttaaccatctgatgggat 15144283  T
Q  388 gacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    ||| ||||||||||||||||||||||||||| || ||||||| |||||||| ||| ||||| ||| ||||||||||||||    
T  15144284 gacatttaaatagctaaacggctgagggcagggatctctcattgggcttagttaaatggtccaactcatcacggtccatt 15144363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 217 - 467
Target Start/End: Complemental strand, 40113702 - 40113451
Alignment:
Q  217 atcattagatacaaattataacatatcatcggtaataaagaagg-aataagaaattgtgtacgtgtaggatttaggattcatgaaggatagttgtcggaa 315  Q
    |||| ||||||||| ||||| |||||||    |||||||||||| ||||||| ||||| ||| | || |||| || ||||| ||||||||| | ||  ||    
T  40113702 atcaatagatacaagttatagcatatcaa---taataaagaagggaataagagattgtatacatttaagattcagaattcaagaaggatagctctc--aa 40113608  T
Q  316 ggatgagagggatgactaccctcatttcgtttagcagcaaaatgttcagaat-gattaaccgtctgata----ggatgacgtttaaatagctaaacggct 410  Q
    |||||||||||||||||||||||||| ||||||||| || |||||||||||| | |||||||| ||||     ||||||||||||||||||||||| |||    
T  40113607 ggatgagagggatgactaccctcattccgtttagcaccagaatgttcagaatagtttaaccgtttgatgcatgggatgacgtttaaatagctaaacagct 40113508  T
Q  411 gagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    |||||||| |||||||||| |||||||||||| ||||| ||||||||||||||||||    
T  40113507 gagggcagggacctctcattgggcttagctaaatggtccaacccatcacggtccatt 40113451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 222 - 467
Target Start/End: Complemental strand, 670293 - 670053
Alignment:
Q  222 tagatacaaattataacatatcatcggtaataaagaaggaa-taagaaattgtgtacgtgtaggatttaggattcatgaaggatagttgtcggaaggatg 320  Q
    ||||||||| ||||| |||||||||| ||||||||||  || ||||||||||||||| | ||  | ||||| ||  ||||  ||| ||||| || |||||    
T  670293 tagatacaagttatagcatatcatcgataataaagaaaaaaataagaaattgtgtaccttta--aattagg-ttggtgaaacataattgtcagacggatg 670197  T
Q  321 agagggatgactaccctcatttcgtttagcagcaaaatgttcagaatgattaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagag 420  Q
    ||||||||||||||||||||| ||||||||| || ||| |||||||| ||| |    ||||| ||||||||||||||||||| ||||||||||||||       
T  670196 agagggatgactaccctcattccgtttagcaccagaatattcagaataattta---actgatgggatgacgtttaaatagctgaacggctgagggcatga 670100  T
Q  421 acctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    ||||||||| |||||||||||| ||||| ||||||||||||||||||    
T  670099 acctctcattgggcttagctaaatggtctaacccatcacggtccatt 670053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 206 - 467
Target Start/End: Complemental strand, 14661570 - 14661303
Alignment:
Q  206 tttaaccatggatcattagatacaaattataacatatcatcggtaataa---agaaggaataagaaattgtgtacgt-gtaggatttaggattcatgaag 301  Q
    |||| ||||||||||  |||||||||||||| ||||||||| |||||||   ||||| ||||||||||| ||||| | ||| | ||||| ||||||||||    
T  14661570 tttagccatggatcac-agatacaaattatagcatatcatcagtaataacaaagaagaaataagaaattatgtaccttgtatg-tttag-attcatgaag 14661474  T
Q  302 gatag---ttgtcggaaggatgagagggatgactaccctcatttcgtttagcagcaaaatg-ttcagaatgatt-aaccgtctgataggatgacgtttaa 396  Q
    |||||   ||||| |||||||||||||||| |||||||||||| ||| ||| |  | ||   |||| ||| ||| ||||||||||| |||||||||||||    
T  14661473 gatagctgttgtcagaaggatgagagggataactaccctcattccgtgtagtactagaagaattcacaataatttaaccgtctgatgggatgacgtttaa 14661374  T
Q  397 atagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    ||||||||||||||||| |||| |||||| ||| | |||||||||| ||||| ||||||||||||||||||    
T  14661373 atagctaaacggctgagagcagggacctcccattgagcttagctaaatggtccaacccatcacggtccatt 14661303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 313 - 467
Target Start/End: Complemental strand, 3950197 - 3950041
Alignment:
Q  313 gaaggatgagagggatgactaccctcatttcgtttagcagca-aaatgttcagaat-gattaaccgtctgataggatgacgtttaaatagctaaacggct 410  Q
    |||| |||||||||||||||||||||||| ||||||||| || ||||||| | | | | ||| |||||| || ||||||||||||||||| |||||||||    
T  3950197 gaagaatgagagggatgactaccctcattccgtttagcaccataaatgtttatagtagtttatccgtctcatgggatgacgtttaaatagttaaacggct 3950098  T
Q  411 gagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    |||||||  |||||||||| |||||||||||| ||||| ||||||||||||||||||    
T  3950097 gagggcaaggacctctcattgggcttagctaaatggtctaacccatcacggtccatt 3950041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 313 - 467
Target Start/End: Complemental strand, 41826751 - 41826604
Alignment:
Q  313 gaaggatgagagggatgactaccctcatttcgtttagcagcaaaatgttcagaat-gattaaccgtctgataggatgacgtttaaatagctaaacggctg 411  Q
    ||||||||||||||||||||||||||||| |||||||||  ||  |||||||| | | ||||||||||||| |||||||||||||||||||||||||       
T  41826751 gaaggatgagagggatgactaccctcattccgtttagcacgaa--tgttcagagtagtttaaccgtctgatgggatgacgtttaaatagctaaacgg--- 41826657  T
Q  412 agggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
       |||| |||||||||| |||||||||||| ||||| ||||||||||||||||||    
T  41826656 ---gcagggacctctcattgggcttagctaaatggtccaacccatcacggtccatt 41826604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 313 - 467
Target Start/End: Original strand, 23888339 - 23888495
Alignment:
Q  313 gaaggatgagagggatgactaccctcatttcgtttagcagcaaaatg-ttcagaat-gattaaccgtctgataggatgacgtttaaatagctaaacggct 410  Q
    |||||||||||| |||||||||||||||| ||| |||||  | ||   |||| ||| | ||||||||||| | |||||||||||||||||||||||||||    
T  23888339 gaaggatgagagagatgactaccctcattccgtgtagcactagaagaattcacaatagtttaaccgtctggtgggatgacgtttaaatagctaaacggct 23888438  T
Q  411 gagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    |||||||| |||||||||| ||| |||||||| ||||| ||||||||||||||||||    
T  23888439 gagggcagggacctctcattgggattagctaaatggtccaacccatcacggtccatt 23888495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 313 - 467
Target Start/End: Original strand, 23892415 - 23892571
Alignment:
Q  313 gaaggatgagagggatgactaccctcatttcgtttagcagcaaaatg-ttcagaat-gattaaccgtctgataggatgacgtttaaatagctaaacggct 410  Q
    |||||||||||| |||||||||||||||| ||| |||||  | ||   |||| ||| | ||||||||||| | |||||||||||||||||||||||||||    
T  23892415 gaaggatgagagagatgactaccctcattccgtgtagcactagaagaattcacaatagtttaaccgtctggtgggatgacgtttaaatagctaaacggct 23892514  T
Q  411 gagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    |||||||| |||||||||| ||| |||||||| ||||| ||||||||||||||||||    
T  23892515 gagggcagggacctctcattgggattagctaaatggtccaacccatcacggtccatt 23892571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 358 - 462
Target Start/End: Original strand, 17530016 - 17530120
Alignment:
Q  358 tgttcagaatgattaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatc 457  Q
    ||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| |||| |||||||||| ||| |||||||| ||||| ||||||||    
T  17530016 tgttcagaatgcttaaccgtctgatgggatgacgttgaaatagctaaacggctgagcgcagtgacctctcattgggtttagctaaatggtccaacccatc 17530115  T
Q  458 acggt 462  Q
    |||||    
T  17530116 acggt 17530120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 358 - 466
Target Start/End: Original strand, 18341561 - 18341669
Alignment:
Q  358 tgttcagaatgattaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatc 457  Q
    ||||| ||||| ||||||||||||| ||||||||||||||||||||||| | ||| ||||| |||||||||| | |||||||||| ||||| ||||||||    
T  18341561 tgttcggaatgcttaaccgtctgatgggatgacgtttaaatagctaaacagttgaaggcagggacctctcattgagcttagctaaatggtccaacccatc 18341660  T
Q  458 acggtccat 466  Q
    |||||||||    
T  18341661 acggtccat 18341669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 222 - 467
Target Start/End: Complemental strand, 663061 - 662821
Alignment:
Q  222 tagatacaaattataacatatcatcggtaataaagaaggaa-taagaaattgtgtacgtgtaggatttaggattcatgaaggatagttgtcggaaggatg 320  Q
    ||||||||| ||||| |||||||||| | ||||||||  || ||||||||||||||| | |  || ||||| ||  ||||| ||| || ||  |||||||    
T  663061 tagatacaagttatagcatatcatcgattataaagaaaaaactaagaaattgtgtaccttt--gaattagg-ttggtgaagcataattatcataaggatg 662965  T
Q  321 agagggatgactaccctcatttcgtttagcagcaaaatgttcagaat-gattaaccgtctgataggatgacgtttaaatagctaaacggctgagggcaga 419  Q
    |||  ||||| |||||||||| ||||||||| || | | |||||||| | ||||||||    | ||||||||||||||||||| |||| ||||||||||     
T  662964 agattgatgattaccctcattccgtttagcaccagactattcagaatagtttaaccgt----tgggatgacgtttaaatagctgaacgactgagggcagt 662869  T
Q  420 gacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    |||||||||| || ||||||||| ||||| ||||||||||||||||||    
T  662868 gacctctcattggacttagctaaatggtccaacccatcacggtccatt 662821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 379 - 467
Target Start/End: Complemental strand, 39190237 - 39190149
Alignment:
Q  379 tgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    |||| |||||||||||| |||||||||||||||||||||| |||||||||| || ||||||||| ||||| ||||||||||||||||||    
T  39190237 tgatgggatgacgtttacatagctaaacggctgagggcagggacctctcattggacttagctaaatggtccaacccatcacggtccatt 39190149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 362 - 467
Target Start/End: Original strand, 17527304 - 17527409
Alignment:
Q  362 cagaatgattaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacgg 461  Q
    ||||||| ||||||||||||   ||| |||||||||||||||||| | |||| |||| |||||||||| |||||||||||| | ||| ||||||||||||    
T  17527304 cagaatgtttaaccgtctgacgcgataacgtttaaatagctaaactgttgagagcagggacctctcattgggcttagctaaatagtccaacccatcacgg 17527403  T
Q  462 tccatt 467  Q
    ||||||    
T  17527404 tccatt 17527409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 188 - 277
Target Start/End: Original strand, 4840381 - 4840470
Alignment:
Q  188 atgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataaagaaggaataagaaattgtgtac 277  Q
    |||||| ||||||||||||||| |||| |||| ||| |||||||||||| |||||||||   ||||||||||||| ||||||||||||||    
T  4840381 atgatataagttttaatatttagccatagatcgttacatacaaattatagcatatcatcaagaataaagaaggaagaagaaattgtgtac 4840470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 296 - 467
Target Start/End: Complemental strand, 25336395 - 25336220
Alignment:
Q  296 atgaaggatagttgtcggaaggatgagagggatg---actaccctcatttcgtttagcagcaaaatgttcagaat-gattaaccgt-ctgataggatgac 390  Q
    ||||||||||  ||||  ||||||||||||||||   ||||||||||| |||||||||| ||  ||||||| ||| || ||||||| |||||   |||||    
T  25336395 atgaaggataactgtcaaaaggatgagagggatggctactaccctcatatcgtttagcaccagtatgttcataatagaataaccgttctgatgaaatgac 25336296  T
Q  391 gtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    |||||||||||||||  ||||| |||||| |||||||||  | |||| |||| ||||  ||||||||||||||||||    
T  25336295 gtttaaatagctaaatagctgatggcaga-acctctcattagacttaactaaatggttcaacccatcacggtccatt 25336220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 39190396 - 39190331
Alignment:
Q  212 catggatcattagatacaaattataacatatcatcggtaataaagaaggaataagaaattgtgtac 277  Q
    ||||||||| ||||||||||||||| |||||||||  ||||||||||||||  |||||||||||||    
T  39190396 catggatcactagatacaaattatagcatatcatcaataataaagaaggaaggagaaattgtgtac 39190331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 468 - 518
Target Start/End: Original strand, 18341687 - 18341737
Alignment:
Q  468 atcactcatattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    ||||| ||||||||||| ||||||||||| |||||||||||||||||||||    
T  18341687 atcacacatattcatcatctaattagtgcttaacacaatagatcataattt 18341737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 215 - 276
Target Start/End: Original strand, 17529868 - 17529929
Alignment:
Q  215 ggatcattagatacaaattataacatatcatcggtaataaagaaggaataagaaattgtgta 276  Q
    |||||||| ||||||||||||| |||||||||  ||| ||||||||| ||||||||||||||    
T  17529868 ggatcattggatacaaattatatcatatcatcattaacaaagaaggattaagaaattgtgta 17529929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 474 - 518
Target Start/End: Complemental strand, 41826581 - 41826537
Alignment:
Q  474 catattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||    
T  41826581 catattcatcaactaattagtgcttaacacaatagaccataattt 41826537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 17527152 - 17527214
Alignment:
Q  215 ggatcattagatacaaattataacatatcatcggtaataaagaaggaataagaaattgtgtac 277  Q
    |||| ||||||||||||||||| |||||||||  ||| ||| ||||| |||||||||||||||    
T  17527152 ggattattagatacaaattatagcatatcatcattaacaaataaggattaagaaattgtgtac 17527214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 468 - 518
Target Start/End: Complemental strand, 39190132 - 39190082
Alignment:
Q  468 atcactcatattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    ||||||||||||||||||||||||| ||  |||||||||||| ||||||||    
T  39190132 atcactcatattcatcaactaattaatgtttaacacaatagaccataattt 39190082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 468 - 508
Target Start/End: Original strand, 15144380 - 15144420
Alignment:
Q  468 atcactcatattcatcaactaattagtgcctaacacaatag 508  Q
    ||||| ||||||||||||||||||||||| |||||||||||    
T  15144380 atcacacatattcatcaactaattagtgcttaacacaatag 15144420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 277
Target Start/End: Complemental strand, 3950307 - 3950221
Alignment:
Q  189 tgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataaagaa-ggaataagaaattgtgtac 277  Q
    ||||||||||||  | ||| | |||| ||||| |||||| || |||||||||||||   ||||||||||| |||||||||||||||||||    
T  3950307 tgataaaagtttatagattcagccatagatcaatagatataagttataacatatca---gtaataaagaagggaataagaaattgtgtac 3950221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 518
Target Start/End: Complemental strand, 670036 - 669986
Alignment:
Q  468 atcactcatattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    ||||| |||||||||||| |||||||||| |||||||||||| || |||||    
T  670036 atcacacatattcatcaagtaattagtgcttaacacaatagaccacaattt 669986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 514
Target Start/End: Complemental strand, 25336203 - 25336157
Alignment:
Q  468 atcactcatattcatcaactaattagtgcctaacacaatagatcata 514  Q
    ||||| ||||||||||||||||||||||| |||||||| ||| ||||    
T  25336203 atcacacatattcatcaactaattagtgcttaacacaacagaccata 25336157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 365 - 467
Target Start/End: Complemental strand, 33426069 - 33425963
Alignment:
Q  365 aatgattaaccgtctgataggatgacgtttaaatagctaaacgg----ctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacg 460  Q
    |||| ||||||||||||  |||| ||||||| | ||||||||||    ||||||| || |||||||||| | |||||||||| | |||||||| |||| |    
T  33426069 aatgcttaaccgtctgacgggataacgtttagaaagctaaacggccgactgagggtagggacctctcattgagcttagctaaatagtcaaacctatcatg 33425970  T
Q  461 gtccatt 467  Q
     ||||||    
T  33425969 atccatt 33425963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 518
Target Start/End: Complemental strand, 40113434 - 40113382
Alignment:
Q  468 atcactcatattcatcaactaat--tagtgcctaacacaatagatcataattt 518  Q
    ||||| |||||||||||||||||  |||||| |||||||||||| ||||||||    
T  40113434 atcacacatattcatcaactaattatagtgcttaacacaatagaccataattt 40113382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 3e-56; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 189 - 467
Target Start/End: Original strand, 32285539 - 32285816
Alignment:
Q  189 tgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataaagaaggaataagaaattgtgtacgtgtaggattt 288  Q
    ||||||||||||||  |||||| ||||||||  ||||||||||||||| |||||||| |  || |||||||||| |||| ||||||||  | ||| |||     
T  32285539 tgataaaagttttagaatttaatcatggatc--tagatacaaattatagcatatcat-gacaacaaagaaggaacaagagattgtgtatctttagaatt- 32285634  T
Q  289 aggattcatgaaggatagttgtcggaaggatgagagggatgactaccctcatttcgtttagcag--caaaatgttcagaat-gattaaccgtctgatagg 385  Q
    ||| || ||||| ||||| |||| |||||||||||| |||||||||||||||| |||||||||   |  |||||||||||| | ||||||||||||| ||    
T  32285635 aggtttgatgaatgatagctgtcagaaggatgagagagatgactaccctcattccgtttagcacaccggaatgttcagaatagtttaaccgtctgatggg 32285734  T
Q  386 atgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    ||||||||||||| | ||||||||||||||||||||||||||||  ||||||||||| ||||| ||||||||||||||||||    
T  32285735 atgacgtttaaattgttaaacggctgagggcagagacctctcattaggcttagctaaatggtccaacccatcacggtccatt 32285816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 253 - 467
Target Start/End: Original strand, 32280656 - 32280872
Alignment:
Q  253 aaagaaggaataagaaattgtgtacgtgtaggatttaggattcatgaaggatagttgtcggaaggatgagagggatgactaccctcatttcgtttagcag 352  Q
    |||||||||| |||| ||||||||| | ||| ||| ||| || |||||||||||||||| |||||||||||||||||||||||||| ||  ||||||||     
T  32280656 aaagaaggaacaagagattgtgtacctttagaatt-aggtttgatgaaggatagttgtcagaaggatgagagggatgactaccctcgttctgtttagcac 32280754  T
Q  353 --caaaatgttcagaat-gattaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtca 449  Q
      || |||||||||||| | |||||||| |||| |||||||||||||||||||||||||||||||| || |||||||||| |||||||||||| |||||     
T  32280755 accagaatgttcagaatagtttaaccgtatgatgggatgacgtttaaatagctaaacggctgagggtagggacctctcattgggcttagctaaatggtcc 32280854  T
Q  450 aacccatcacggtccatt 467  Q
    ||||||||||||||||||    
T  32280855 aacccatcacggtccatt 32280872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 269 - 467
Target Start/End: Complemental strand, 3470089 - 3469892
Alignment:
Q  269 attgtgtacgtgtaggatttaggattcatgaaggatagttgtcggaaggatgagagggatgactaccctcatttcgtttagcagcaaaatgttcagaat- 367  Q
    ||||||||| | || ||| |||||||||| |||||||||||||  ||||||||||||||||| |||||||||| ||||||||| || |||||||||| |     
T  3470089 attgtgtacctttaagatctaggattcataaaggatagttgtc--aaggatgagagggatgattaccctcattccgtttagcaccagaatgttcagagta 3469992  T
Q  368 gattaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    | ||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||| |||||| ||||| ||||| || |||||||||||||||    
T  3469991 gtttaaccgtctgatgggatgacgtttaaatagttaaacggctgagggcagggacctctcattgggcttcgctaaatggtccaaaccatcacggtccatt 3469892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 287 - 467
Target Start/End: Complemental strand, 31112597 - 31112420
Alignment:
Q  287 ttaggattcatgaaggatagttgtcggaaggatgagagggatgactaccctcatttcgtttagcagcaaaatgttcagaat-gattaaccgtctgatagg 385  Q
    |||||||||||||||||||| |||| |||||| |||||||||||||||||||||| ||||||||| ||    ||||||||| | ||||||||||||| ||    
T  31112597 ttaggattcatgaaggatagctgtcagaaggaggagagggatgactaccctcattccgtttagcacca----gttcagaatagtttaaccgtctgatggg 31112502  T
Q  386 atgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    ||||||||||||||| ||||||||| ||||||  |||||||||| |||||||||||| ||||| ||||||||||||||||||    
T  31112501 atgacgtttaaatagttaaacggctaagggcatggacctctcattgggcttagctaaatggtccaacccatcacggtccatt 31112420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 188 - 463
Target Start/End: Original strand, 45677701 - 45677983
Alignment:
Q  188 atgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataaagaaggaataagaaattgtgtacgtgta-ggat 286  Q
    ||||| ||||||||| | |||| ||||||||||||||||||||||||||  ||||||  |  || |||||||| |||||| ||| ||||| | || ||||    
T  45677701 atgattaaagttttagtgtttacccatggatcattagatacaaattatagtatatcaa-gacaacaaagaagggataagagattatgtacctttaaggat 45677799  T
Q  287 ttaggattc----atgaaggatagttgtcggaaggatgagagggatgactaccctcatttcgtttagcagcaaaat-gttcagaat-gattaaccgtctg 380  Q
    | |||||||    || |||||||  ||||  |||||||||||||||||||||||||||| ||| ||||| || ||  ||||||||| | |||||||||||    
T  45677800 taaggattcgttcataaaggataactgtcacaaggatgagagggatgactaccctcattccgtgtagcaccagaagagttcagaatagtttaaccgtctg 45677899  T
Q  381 ataggat-gacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtc 463  Q
    || |||| ||||||||||||||||||||||||||||||| |||||||||| |||||||| ||| ||||| ||||||||||||||    
T  45677900 atgggattgacgtttaaatagctaaacggctgagggcagggacctctcattgggcttaggtaaatggtccaacccatcacggtc 45677983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 315 - 467
Target Start/End: Original strand, 39032682 - 39032843
Alignment:
Q  315 aggatgagagggatgactaccctcatttcgtttagcagcaaaatgttcagaat---ga------ttaaccgtctgataggatgacgtttaaatagctaaa 405  Q
    ||||||||||||||||||||||||||| | ||||||| || ||||||||||||   ||      ||||||||||||| ||||||||||||||||||||||    
T  39032682 aggatgagagggatgactaccctcattccctttagcaccagaatgttcagaattcagaatagttttaaccgtctgatgggatgacgtttaaatagctaaa 39032781  T
Q  406 cggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    ||||||||||||| |||||||||| |||||||||||| ||||| ||||||||||||||||||    
T  39032782 cggctgagggcagggacctctcattgggcttagctaaatggtccaacccatcacggtccatt 39032843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 323 - 467
Target Start/End: Original strand, 29960875 - 29961021
Alignment:
Q  323 agggatgactaccctcatttcgtttagcagcaaaatgttcagaatgatt--aaccgtctgataggatgacgtttaaatagctaaacggctgagggcagag 420  Q
    ||||||||||||||||||| ||| ||| | || ||||||||||||| ||  |||| |||||| |||||||||||||||||||||||||||||||||||||    
T  29960875 agggatgactaccctcattccgtctagtatcagaatgttcagaatggttttaaccatctgatgggatgacgtttaaatagctaaacggctgagggcagag 29960974  T
Q  421 acctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    ||||||||| ||| |||||||| ||||| ||||||||||||||||||    
T  29960975 acctctcattgggtttagctaaatggtccaacccatcacggtccatt 29961021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 323 - 467
Target Start/End: Original strand, 30010080 - 30010226
Alignment:
Q  323 agggatgactaccctcatttcgtttagcagcaaaatgttcagaatgatt--aaccgtctgataggatgacgtttaaatagctaaacggctgagggcagag 420  Q
    ||||||||||||||||||| ||| ||| | || ||||||||||||| ||  |||| |||||| |||||||||||||||||||||||||||||||||||||    
T  30010080 agggatgactaccctcattccgtctagtatcagaatgttcagaatggttttaaccatctgatgggatgacgtttaaatagctaaacggctgagggcagag 30010179  T
Q  421 acctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    ||||||||| ||| |||||||| ||||| ||||||||||||||||||    
T  30010180 acctctcattgggtttagctaaatggtccaacccatcacggtccatt 30010226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 284 - 467
Target Start/End: Original strand, 19240430 - 19240614
Alignment:
Q  284 gatttaggattcatgaaggatagttgtcggaaggatgagagggatgactaccctcatttcgtttagcagcaaaatgttcagaat-gattaaccgtctgat 382  Q
    |||||| ||||||| |||||||| ||||  ||||||||||| |||||||||||||||| | ||||||| || ||| |||| ||| | |||||||||||||    
T  19240430 gatttaagattcatcaaggatagctgtcacaaggatgagagagatgactaccctcattccatttagcaccagaatattcataatagtttaaccgtctgat 19240529  T
Q  383 aggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
     |||| |||||||||||| ||||||| ||||||||| ||||||||||  ||||||||||| ||||| || |||||||||||||||    
T  19240530 gggataacgtttaaatagttaaacggatgagggcagggacctctcattaggcttagctaaatggtccaatccatcacggtccatt 19240614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 188 - 429
Target Start/End: Complemental strand, 39351184 - 39350937
Alignment:
Q  188 atgataaaagttttaata--tttaaccatggatcattagatacaaattataacatatcatcggtaataaagaaggaataagaaattgtgtacgtgtagga 285  Q
    ||||||||||||||| ||  |||| ||||||||||||||||| ||||||||  ||||||  |  || ||||||| ||||||| ||||||||| | || ||    
T  39351184 atgataaaagttttagtaattttagccatggatcattagatataaattatagtatatcaa-gacaacaaagaagaaataagagattgtgtacctttaaga 39351086  T
Q  286 tttaggattcatgaaggatagttgtcggaaggatgagagggatgactaccctcatttcgtttag--cagcaaaatgt---tcagaatgattaaccgtctg 380  Q
    |||| |||||||||| ||||| |||| ||||||||||||||||||||||||||||| | |||||    |||  ||||   | ||||   |||||||||||    
T  39351085 tttatgattcatgaatgatagctgtcagaaggatgagagggatgactaccctcattccatttaggtttgcaccatgtcagtaagaaaatttaaccgtctg 39350986  T
Q  381 ataggatgacgtttaaatagctaaacggctgagggcagagacctctcat 429  Q
    || ||||||||||||||||||||||||| ||||||||| ||||||||||    
T  39350985 atgggatgacgtttaaatagctaaacggttgagggcagggacctctcat 39350937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 315 - 467
Target Start/End: Original strand, 39039695 - 39039855
Alignment:
Q  315 aggatgagagggatgactaccctcatttcgtttagcagcaaaatgttcagaat---ga------ttaaccgtctgataggatgacgtttaaatagctaaa 405  Q
    |||||||||||||| |||||||||||| | ||||||| |  ||||||||||||   ||      |||||||||||||  |||||||||||||||||||||    
T  39039695 aggatgagagggataactaccctcattccctttagcacctgaatgttcagaattcagaatagttttaaccgtctgatgcgatgacgtttaaatagctaaa 39039794  T
Q  406 cggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    || |||||||||| |||||||||| |||||||||||| ||||| ||||||||||||||||||    
T  39039795 cgactgagggcag-gacctctcattgggcttagctaaatggtccaacccatcacggtccatt 39039855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 365 - 467
Target Start/End: Complemental strand, 11458274 - 11458172
Alignment:
Q  365 aatgattaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtcc 464  Q
    |||| ||||||||||||| | ||||||||||||||||||||||||| ||||||  |||||||||| |||||||| ||| |||||||| ||||||||||||    
T  11458274 aatgcttaaccgtctgatggtatgacgtttaaatagctaaacggctaagggcatggacctctcattgggcttagttaaatggtcaaatccatcacggtcc 11458175  T
Q  465 att 467  Q
    |||    
T  11458174 att 11458172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 358 - 466
Target Start/End: Complemental strand, 46611967 - 46611859
Alignment:
Q  358 tgttcagaatgattaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatc 457  Q
    |||| |||||| ||||||||||||| | |||||||||||||| |||||||||||||||||| ||||||| || |||||||||||| ||||| ||| ||||    
T  46611967 tgttgagaatgtttaaccgtctgatggcatgacgtttaaataactaaacggctgagggcagtgacctcttattgggcttagctaaatggtccaactcatc 46611868  T
Q  458 acggtccat 466  Q
    ||| |||||    
T  46611867 acgatccat 46611859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 389 - 467
Target Start/End: Original strand, 10626311 - 10626389
Alignment:
Q  389 acgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    |||||||||||||||||||||||||||||| |||| ||||| |||||||||||| ||||| ||||||||||||||||||    
T  10626311 acgtttaaatagctaaacggctgagggcagggaccactcattgggcttagctaaatggtccaacccatcacggtccatt 10626389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 370 - 467
Target Start/End: Complemental strand, 38445783 - 38445686
Alignment:
Q  370 ttaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    |||||||||||||  ||||||||||||||||||||||| | |||||||||||||||| || || ||||||||| ||||  ||||||||||||| ||||    
T  38445783 ttaaccgtctgatgagatgacgtttaaatagctaaacgaccgagggcagagacctctaattggacttagctaaatggttcaacccatcacggttcatt 38445686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 361 - 467
Target Start/End: Complemental strand, 41273111 - 41273005
Alignment:
Q  361 tcagaatgattaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacg 460  Q
    |||||||| |||||||||| || ||||||||||||||||| ||||||||||||||||| ||||||||||    ||||||||| ||||  |||| |||| |    
T  41273111 tcagaatgtttaaccgtctaatgggatgacgtttaaatagataaacggctgagggcagggacctctcattaaacttagctaaatggttcaacctatcatg 41273012  T
Q  461 gtccatt 467  Q
    |||||||    
T  41273011 gtccatt 41273005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 205 - 328
Target Start/End: Original strand, 30006661 - 30006782
Alignment:
Q  205 atttaaccatggatcattagatacaaattataacatatcatcggtaataaagaaggaataagaaattgtgtacgtgtaggatttaggattcatgaaggat 304  Q
    ||||| |||||||| |||||||||||||||||||||||||| |  ||||||||||||| |||| ||||||||| | ||  | ||||| || |||||||||    
T  30006661 atttagccatggattattagatacaaattataacatatcat-gacaataaagaaggaacaagagattgtgtaccttta-caattaggtttgatgaaggat 30006758  T
Q  305 agttgtcggaaggatgagagggat 328  Q
    ||||||   |||||||||||||||    
T  30006759 agttgttaaaaggatgagagggat 30006782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 191 - 277
Target Start/End: Complemental strand, 46612145 - 46612061
Alignment:
Q  191 ataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataaagaaggaataagaaattgtgtac 277  Q
    ||||||||||||  |||||||||| |||||||||||||||||  || |||||||||||||| ||||||| ||||| |||||||||||    
T  46612145 ataaaagttttagaatttaaccatagatcattagatacaaat--tagcatatcatcggtaacaaagaagaaataaaaaattgtgtac 46612061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 188 - 467
Target Start/End: Complemental strand, 50158492 - 50158215
Alignment:
Q  188 atgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataaagaaggaataagaaattgtgtacgtgta-ggat 286  Q
    |||||||||||||||  ||||| | |||||||||||||||||| ||||| |||||||  |  ||||||||||| |||||| ||||||||| | || ||||    
T  50158492 atgataaaagttttagaatttagc-atggatcattagatacaagttatagcatatcaa-gacaataaagaagggataagagattgtgtacctttaaggat 50158395  T
Q  287 ttaggattc----atgaaggatagttgtcggaaggatgagagggatgactaccctcatttcgtttagcagcaaaatgttcagaat-gattaaccgtctga 381  Q
    | |||||||    || ||  |||| |||| |||||||||| || ||||||||||||||| | |      |  ||  ||||||||| | ||||||||||||    
T  50158394 taaggattcgttcataaaaaatagctgtcagaaggatgagcggaatgactaccctcattccct------gagaagagttcagaatagtttaaccgtctga 50158301  T
Q  382 taggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    |  ||| || |||||||||| |||||||||||||||   |||| |||| |  ||||| ||| ||||| ||||||||||||||||||    
T  50158300 tgtgatcacatttaaatagccaaacggctgagggcatgaacctttcattgaacttagttaaatggtccaacccatcacggtccatt 50158215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 270
Target Start/End: Complemental strand, 11458440 - 11458360
Alignment:
Q  189 tgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataaagaaggaataagaaat 270  Q
    ||||||||||||||| | ||| |||| |||||| ||||||||||||||||||||||||  ||| | ||||||||||||||||    
T  11458440 tgataaaagttttaacacttagccatagatcat-agatacaaattataacatatcatcaataagagagaaggaataagaaat 11458360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 474 - 518
Target Start/End: Complemental strand, 41272982 - 41272938
Alignment:
Q  474 catattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||    
T  41272982 catattcatcaactaattagtgcttaacacaatagaccataattt 41272938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 468 - 518
Target Start/End: Complemental strand, 3469875 - 3469825
Alignment:
Q  468 atcactcatattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    ||||| |||||||||||| |||||||||| |||||||||||| ||||||||    
T  3469875 atcacacatattcatcaattaattagtgcttaacacaatagaccataattt 3469825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 468 - 518
Target Start/End: Original strand, 19240631 - 19240681
Alignment:
Q  468 atcactcatattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    ||||| ||||||||||||||||||||||| |||||||||| | ||||||||    
T  19240631 atcacacatattcatcaactaattagtgcttaacacaatataccataattt 19240681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 468 - 518
Target Start/End: Original strand, 29961038 - 29961088
Alignment:
Q  468 atcactcatattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    ||||| ||||||||||||||||||| ||| |||||||||||| ||||||||    
T  29961038 atcacacatattcatcaactaattaatgcttaacacaatagaccataattt 29961088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 468 - 518
Target Start/End: Original strand, 30010243 - 30010293
Alignment:
Q  468 atcactcatattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    ||||| ||||||||||||||||||| ||| |||||||||||| ||||||||    
T  30010243 atcacacatattcatcaactaattaatgcttaacacaatagaccataattt 30010293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 468 - 517
Target Start/End: Original strand, 39032860 - 39032909
Alignment:
Q  468 atcactcatattcatcaactaattagtgcctaacacaatagatcataatt 517  Q
    ||||| ||||||||||||||||||||||| ||||| |||||| |||||||    
T  39032860 atcacacatattcatcaactaattagtgcttaacagaatagaccataatt 39032909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 518
Target Start/End: Original strand, 10626406 - 10626456
Alignment:
Q  468 atcactcatattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    ||||| ||||| |||| |||||||||||| |||||||||||| ||||||||    
T  10626406 atcacacatatccatctactaattagtgcttaacacaatagaccataattt 10626456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 518
Target Start/End: Original strand, 11172128 - 11172178
Alignment:
Q  468 atcactcatattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    ||||| ||||||||||||||||||||||| || || |||||| ||||||||    
T  11172128 atcacacatattcatcaactaattagtgcttatcagaatagaccataattt 11172178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 476 - 518
Target Start/End: Complemental strand, 31112395 - 31112353
Alignment:
Q  476 tattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    ||||||||||||||||||| | |||||||||||| ||||||||    
T  31112395 tattcatcaactaattagtacttaacacaatagaccataattt 31112353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 32280567 - 32280622
Alignment:
Q  188 atgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcat 245  Q
    |||||||||||||||  |||||| ||||||||  ||||||||||||||| ||||||||    
T  32280567 atgataaaagttttagaatttaatcatggatc--tagatacaaattatagcatatcat 32280622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 189 - 277
Target Start/End: Complemental strand, 41273275 - 41273190
Alignment:
Q  189 tgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataaagaaggaataagaaattgtgtac 277  Q
    ||||||||||||||  ||| |||||| ||||| |||||||||  ||||||||||||   |||| || ||||||| ||||| ||||||||    
T  41273275 tgataaaagttttagaattcaaccatagatcagtagatacaaggtataacatatca---gtaacaaggaaggaagaagaatttgtgtac 41273190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 277
Target Start/End: Original strand, 39032555 - 39032646
Alignment:
Q  189 tgataaaagttttaatatttaaccatggatcattagatacaaattataacatatc---atcggtaataaagaaggaataagaaattgtgtac 277  Q
    ||||||||||||||  ||| | |||||||||| ||||||||| ||||| ||||||   ||| |||  |||||||||| ||||| ||||||||    
T  39032555 tgataaaagttttataattaagccatggatcagtagatacaagttatagcatatcagtatcagtatcaaagaaggaagaagaatttgtgtac 39032646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 517
Target Start/End: Original strand, 39039872 - 39039921
Alignment:
Q  468 atcactcatattcatcaactaattagtgcctaacacaatagatcataatt 517  Q
    ||||| ||||||||||||||||||||||  ||||| |||||| |||||||    
T  39039872 atcacacatattcatcaactaattagtgtttaacagaatagaccataatt 39039921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 97; Significance: 3e-47; HSPs: 4)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 189 - 467
Target Start/End: Complemental strand, 9252 - 8977
Alignment:
Q  189 tgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataaagaaggaataagaaattgtgtacgtgtaggattt 288  Q
    |||||||||||||| | |||| ||||||||||||||||||| |||||| |||||||  |  || |||||||| |||||| ||||||||| |  ||||||     
T  9252 tgataaaagttttagtgtttagccatggatcattagatacagattatagcatatcaa-gacaacaaagaagggataagagattgtgtaccta-aggattc 9155  T
Q  289 aggattcatgaaggatagttgtcggaaggatgagagggatgactaccctcatttcgtttagcagcaaaatg--ttcagaatgatt-aaccgtctgatagg 385  Q
        ||||| || ||||| |||  |||| |||||||||||||||||||||||| ||||||||| || ||    ||||||||| || ||||||||||| ||    
T  9154 g---ttcataaatgatagatgtaagaag-atgagagggatgactaccctcattccgtttagcaccagaagaatttcagaatggtttaaccgtctgatggg 9059  T
Q  386 atgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||  ||||||||||||||||||    
T  9058 atgacgtttaaatagctaaacggctgagggcagggacctctcattgggcttagctaaatggttcaacccatcacggtccatt 8977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 189 - 467
Target Start/End: Complemental strand, 4552 - 4277
Alignment:
Q  189 tgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataaagaaggaataagaaattgtgtacgtgtaggattt 288  Q
    |||||||||||||| | |||| ||||||||||||||||||| |||||| |||||||  |  || |||||||| |||||| ||||||||| |  ||||||     
T  4552 tgataaaagttttagtgtttagccatggatcattagatacagattatagcatatcaa-gacaacaaagaagggataagagattgtgtaccta-aggattc 4455  T
Q  289 aggattcatgaaggatagttgtcggaaggatgagagggatgactaccctcatttcgtttagcagcaaaatg--ttcagaatgatt-aaccgtctgatagg 385  Q
        ||||| || ||||| |||  |||| |||||||||||||||||||||||| ||||||||| || ||    ||||||||| || ||||||||||| ||    
T  4454 g---ttcataaatgatagatgtaagaag-atgagagggatgactaccctcattccgtttagcaccagaagaatttcagaatggtttaaccgtctgatggg 4359  T
Q  386 atgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    ||||||||||||||||| ||||| ||||||||| |||||||||| |||||||||||| ||||  ||||||||||||||||||    
T  4358 atgacgtttaaatagctgaacggttgagggcagggacctctcattgggcttagctaaatggttcaacccatcacggtccatt 4277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 468 - 518
Target Start/End: Complemental strand, 8960 - 8910
Alignment:
Q  468 atcactcatattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    ||||| ||||||||| ||||||||||||| |||||||||||| ||||||||    
T  8960 atcacacatattcataaactaattagtgcttaacacaatagaccataattt 8910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 518
Target Start/End: Complemental strand, 4260 - 4210
Alignment:
Q  468 atcactcatattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    ||||| ||||||||| ||||||||||||  |||||||||||| ||||||||    
T  4260 atcacacatattcataaactaattagtgtttaacacaatagaccataattt 4210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 1e-43; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 189 - 467
Target Start/End: Complemental strand, 33367082 - 33366798
Alignment:
Q  189 tgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataa---agaaggaataagaaattgtgtacgt-gtagg 284  Q
    |||||||| ||||||| |||| |||||||||| ||||||||||||||| ||||||||| ||| |||   |||||||||||||||||||| || | ||| |    
T  33367082 tgataaaatttttaatgtttagccatggatcactagatacaaattatagcatatcatcagtagtaacaaagaaggaataagaaattgtgaaccttgtatg 33366983  T
Q  285 atttaggattcatgaaggata---gttgtcggaaggatgagagggatgactaccctcatttcgtttagcagcaaaatg-ttcagaatgattaaccgtctg 380  Q
     ||||| ||||||||||||||   |||||| ||||||||||||||||||||||| ||||| | | ||||| || ||   |||| ||| || |     | |    
T  33366982 -tttag-attcatgaaggataactgttgtcagaaggatgagagggatgactaccttcattccatgtagcaccagaagaattcacaataataatttaaccg 33366885  T
Q  381 ataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    || ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| ||||||||||| ||||||    
T  33366884 atgggatgacgtttaaatagctaaacggctgagggcagggacctctcattgggcttagctaaatggtccaacccatcacgatccatt 33366798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 189 - 467
Target Start/End: Original strand, 42567458 - 42567745
Alignment:
Q  189 tgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcg---gtaataaagaag-gaataagaaattgtgtacgt-gtag 283  Q
    |||||||||||| |   |||| |||||||||| |||||||| |||||| |||||||||    ||||| || ||  |||||||||||||||||| | |||     
T  42567458 tgataaaagtttaagggtttagccatggatcactagatacagattatagcatatcatcacaagtaattaacaaaagaataagaaattgtgtaccttgtat 42567557  T
Q  284 gatttaggattcatgaaggatagttgtcggaaggatgagag------ggatgactaccctcatttcgtttagcagcaaaatgttcagaat-gattaaccg 376  Q
    | |||||| |||||||||||||  |||| ||||||||||||      ||||||||||||||||| ||||||||| || |||||||| ||| | |||||||    
T  42567558 g-tttagg-ttcatgaaggataactgtcagaaggatgagagtgagagggatgactaccctcatt-cgtttagcaccagaatgttcataatagtttaaccg 42567654  T
Q  377 tctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    |||||| ||||||||||||||||| ||||| ||||||||||| |||||||||| |||||||||||| ||||| ||| ||||||||||||||    
T  42567655 tctgatgggatgacgtttaaatagttaaacagctgagggcagggacctctcattgggcttagctaaatggtccaactcatcacggtccatt 42567745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 189 - 434
Target Start/End: Complemental strand, 54256571 - 54256331
Alignment:
Q  189 tgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataaagaaggaataagaaattgtgtacgtgtaggattt 288  Q
    |||||||| ||| | |||||| || ||||||||||||||||||||||| |||||||  |  || ||| ||||||||||| ||||||||| | || |||||    
T  54256571 tgataaaaatttaagtatttagccgtggatcattagatacaaattatagcatatcaa-gacaacaaaaaaggaataagagattgtgtacctttatgattt 54256473  T
Q  289 aggattcatgaaggatagttgtcggaaggatgagagggat-gactaccctcatttcgtttagcagcaaaatgttcag---aatgattaaccgtctgatag 384  Q
    |||||||||| |||||||||||| |||||||||||||||| |||||||||||||        || || |||||||||   | |  ||||||||||||| |    
T  54256472 aggattcatgcaggatagttgtcagaaggatgagagggatagactaccctcatt--------caccagaatgttcaggatagtttttaaccgtctgatgg 54256381  T
Q  385 gatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggc 434  Q
    |||||||||||||||||||||| ||||||||||  |||||||||| ||||    
T  54256380 gatgacgtttaaatagctaaactgctgagggcatggacctctcattgggc 54256331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 358 - 467
Target Start/End: Complemental strand, 36049039 - 36048930
Alignment:
Q  358 tgttcagaatgattaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatc 457  Q
    |||||||||| ||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||    
T  36049039 tgttcagaataattaatcgtatgatgggatgacgtttaaatagctaaacggctgagggcagagacctctcattgggcttagctaaatggtccaacccatc 36048940  T
Q  458 acggtccatt 467  Q
    ||||||||||    
T  36048939 acggtccatt 36048930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 345 - 518
Target Start/End: Original strand, 35904965 - 35905155
Alignment:
Q  345 tttagcagcaaaatgttcagaat-gattaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaat 443  Q
    ||||||| || |||||||||||| | ||||| |||||||  |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||     
T  35904965 tttagcaccataatgttcagaatagtttaactgtctgatgagatgacgtttaaatagctaaacggctaagggcagagacctctcattgggcttagctaaa 35905064  T
Q  444 tggtcaaacccatcacggtccatt----------------atcactcatattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    ||||  ||||||||||||||||||                ||||| ||||||||||||||||||||||| |||||||||||| ||||||||    
T  35905065 tggttcaacccatcacggtccatttagaaagaatagttcaatcacccatattcatcaactaattagtgcttaacacaatagaccataattt 35905155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 370 - 467
Target Start/End: Complemental strand, 6262342 - 6262245
Alignment:
Q  370 ttaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    ||||||||||||| |||| |||||||||||||||||||||| |||||||| ||||||||| |||||||||||| ||||| ||||||||||| ||||||    
T  6262342 ttaaccgtctgatgggataacgtttaaatagctaaacggctaagggcagacacctctcattgggcttagctaaatggtccaacccatcacgatccatt 6262245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 318 - 467
Target Start/End: Original strand, 24423153 - 24423304
Alignment:
Q  318 atgagagggatgactaccctcatttcgtttagcagcaaaatgttcagaatgatt--aaccgtctgataggatgacgtttaaatagctaaacggctgaggg 415  Q
    |||||||| || |||||||||||| ||||||||| || ||||||||||||  ||  |||||||||||  |||||| |||||||||||||||| |||||||    
T  24423153 atgagaggaataactaccctcattccgtttagcaccagaatgttcagaatagttttaaccgtctgatgagatgacatttaaatagctaaacgactgaggg 24423252  T
Q  416 cagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
     || |||||||||| |||||||| ||| ||||| ||||||| ||| ||||||    
T  24423253 aagggacctctcattgggcttagttaaatggtccaacccattacgatccatt 24423304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 358 - 467
Target Start/End: Original strand, 13393666 - 13393775
Alignment:
Q  358 tgttcagaatgattaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatc 457  Q
    ||||||||||| |||||||||||||  ||||| ||||||||||||||| ||||||||| |  |||||||||| |||||||||||| ||||| ||| ||||    
T  13393666 tgttcagaatgtttaaccgtctgatgagatgaagtttaaatagctaaatggctgagggaaaggacctctcattgggcttagctaaatggtccaactcatc 13393765  T
Q  458 acggtccatt 467  Q
    ||||||||||    
T  13393766 acggtccatt 13393775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 358 - 467
Target Start/End: Original strand, 13396805 - 13396914
Alignment:
Q  358 tgttcagaatgattaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatc 457  Q
    ||||||||||| |||||||||||||  ||||| ||||||||||||||| ||||||||| |  |||||||||| |||||||||||| ||||| ||| ||||    
T  13396805 tgttcagaatgtttaaccgtctgatgagatgaagtttaaatagctaaatggctgagggaaaggacctctcattgggcttagctaaatggtccaactcatc 13396904  T
Q  458 acggtccatt 467  Q
    ||||||||||    
T  13396905 acggtccatt 13396914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 379 - 467
Target Start/End: Original strand, 18891116 - 18891204
Alignment:
Q  379 tgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||| ||||| |||||||||| |||||||    
T  18891116 tgatgggatgacgtttaaatagctaaacggctgagggcagggacctctcattgggcttaactaaatggtctaacccatcacagtccatt 18891204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 370 - 467
Target Start/End: Complemental strand, 2228994 - 2228897
Alignment:
Q  370 ttaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    |||||||||||||  |||||||||||||||| ||||||| ||||||| ||||||||| || |||||||| ||| ||||  ||||||||||||||||||    
T  2228994 ttaaccgtctgatgagatgacgtttaaatagttaaacggttgagggctgagacctctaattgggcttagttaaatggttcaacccatcacggtccatt 2228897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 189 - 351
Target Start/End: Complemental strand, 33361937 - 33361764
Alignment:
Q  189 tgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatc---ggtaataaagaag------gaataagaaattgtgtac-g 278  Q
    |||||||||||| ||| |||| |||| ||||| ||||||||||||||| |||||||||    |||| |||||||      ||||||||||||||||||      
T  33361937 tgataaaagtttaaatgtttagccatcgatcactagatacaaattatagcatatcatcatgagtaacaaagaaggaataagaataagaaattgtgtactt 33361838  T
Q  279 tgtaggatttaggattcatgaaggata---gttgtcggaaggatgagagggatgactaccctcatttcgtttagca 351  Q
    |||| | |||||| |||||||||||||   |||||| ||||||||||||||||||||||||||||| ||| |||||    
T  33361837 tgtatg-tttagg-ttcatgaaggataactgttgtcagaaggatgagagggatgactaccctcattccgtgtagca 33361764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 358 - 460
Target Start/End: Original strand, 44160709 - 44160811
Alignment:
Q  358 tgttcagaatgattaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatc 457  Q
    ||||| ||||| || |||||||||| |||||||||||||||||||||||||| |||||||  || ||||| | |||||||||||| ||||  |||||| |    
T  44160709 tgttctgaatgcttgaccgtctgatgggatgacgtttaaatagctaaacggccgagggcaaggatctctcgttgggcttagctaaatggttcaacccacc 44160808  T
Q  458 acg 460  Q
    |||    
T  44160809 acg 44160811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 24423029 - 24423087
Alignment:
Q  188 atgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatc 246  Q
    |||||||||||||||||||||| ||||| |||| ||||||||| |||||||||||||||    
T  24423029 atgataaaagttttaatatttagccatgaatcaatagatacaagttataacatatcatc 24423087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 192 - 276
Target Start/End: Original strand, 44160532 - 44160616
Alignment:
Q  192 taaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataaagaaggaataagaaattgtgta 276  Q
    ||||||||||| ||||||  || |||||||||||||||||||||| |||||||||  ||| |||||| || ||| ||||||||||    
T  44160532 taaaagttttagtatttagtcagggatcattagatacaaattatagcatatcatcaataacaaagaaagattaataaattgtgta 44160616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 399 - 467
Target Start/End: Complemental strand, 33361747 - 33361679
Alignment:
Q  399 agctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    ||||||||||||||||  || ||||||||||  | ||||||||| ||||| ||||||||||||||||||    
T  33361747 agctaaacggctgaggttagggacctctcattagacttagctaaatggtccaacccatcacggtccatt 33361679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 474 - 518
Target Start/End: Complemental strand, 54256261 - 54256217
Alignment:
Q  474 catattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    |||||||||||| |||||||||| |||||||||||||||||||||    
T  54256261 catattcatcaattaattagtgcttaacacaatagatcataattt 54256217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 437
Target Start/End: Complemental strand, 123969 - 123918
Alignment:
Q  386 atgacgtttaaatagctaaacggctgagggcagagacctctcatcgggctta 437  Q
    |||||| |||||||| ||||||| ||||| |||||||||||||||| |||||    
T  123969 atgacgcttaaatagttaaacggatgaggacagagacctctcatcgtgctta 123918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 518
Target Start/End: Complemental strand, 2228880 - 2228830
Alignment:
Q  468 atcactcatattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    ||||| |||||||||||||||||||||||  ||| ||||||| ||||||||    
T  2228880 atcacacatattcatcaactaattagtgctcaactcaatagaccataattt 2228830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 518
Target Start/End: Complemental strand, 6262228 - 6262178
Alignment:
Q  468 atcactcatattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    ||||| ||||||| |||| |||||||||| |||||||||||| ||||||||    
T  6262228 atcacacatattcgtcaattaattagtgcttaacacaatagaccataattt 6262178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 189 - 277
Target Start/End: Complemental strand, 6262475 - 6262390
Alignment:
Q  189 tgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataaagaaggaataagaaattgtgtac 277  Q
    |||||||||||||| |||| |  ||||||||| ||||||||| ||||| |||||||   |||  |||||||||| ||||| ||||||||    
T  6262475 tgataaaagttttactattcaggcatggatcagtagatacaacttatagcatatca---gtatcaaagaaggaagaagaatttgtgtac 6262390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 518
Target Start/End: Original strand, 13393792 - 13393842
Alignment:
Q  468 atcactcatattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    ||||| ||||||||||||||||||||||  |||| ||||||| ||||||||    
T  13393792 atcacgcatattcatcaactaattagtgtttaactcaatagaccataattt 13393842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 518
Target Start/End: Original strand, 13396931 - 13396981
Alignment:
Q  468 atcactcatattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    ||||| ||||||||||||||||||||||  |||| ||||||| ||||||||    
T  13396931 atcacgcatattcatcaactaattagtgtttaactcaatagaccataattt 13396981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 518
Target Start/End: Original strand, 44160834 - 44160884
Alignment:
Q  468 atcactcatattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    ||||| |||||||||||||||||| || | |||||||||||| ||||||||    
T  44160834 atcacacatattcatcaactaatttgtacttaacacaatagaccataattt 44160884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 357 - 467
Target Start/End: Original strand, 40132 - 40242
Alignment:
Q  357 atgttcagaatgattaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccat 456  Q
    ||||||| ||| |||||||||||||| |||||||| |||||||||| ||||||||||||||  ||||||||||||||||||||||| ||||| ||| ||     
T  40132 atgttcataataattaaccgtctgatgggatgacggttaaatagcttaacggctgagggcaatgacctctcatcgggcttagctaaatggtccaactcag 40231  T
Q  457 cacggtccatt 467  Q
    |||||||||||    
T  40232 cacggtccatt 40242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 276
Target Start/End: Original strand, 39953 - 40042
Alignment:
Q  188 atgataaaagttttaatatttaaccatggatcattagatacaaattataacatatcatcggtaataa-agaaggaataagaaattgtgta 276  Q
    ||||||||||||||| | ||||  ||||||| | ||||||||||||||| ||||||||   ||| || | ||||||||||||||||||||    
T  39953 atgataaaagttttagtgtttagtcatggataactagatacaaattatagcatatcattaataacaataaaaggaataagaaattgtgta 40042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 518
Target Start/End: Original strand, 40259 - 40309
Alignment:
Q  468 atcactcatattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
    ||||| ||||||||||||||||||||||| || |||| |||| ||||||||    
T  40259 atcacacatattcatcaactaattagtgcttagcacagtagaccataattt 40309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 357 - 467
Target Start/End: Original strand, 134537 - 134647
Alignment:
Q  357 atgttcagaatgattaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccat 456  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||  || |||||||||| ||||||| |||| ||||  |||||||    
T  134537 atgttcagaatgattaaccgtctgatggaatgacgtttaaatagctaaacgactgaggctagggacctctcattgggcttatctaaatggttcaacccat 134636  T
Q  457 cacggtccatt 467  Q
    |||||||||||    
T  134637 cacggtccatt 134647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1634 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold1634
Description:

Target: scaffold1634; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 370 - 467
Target Start/End: Original strand, 30 - 127
Alignment:
Q  370 ttaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt 467  Q
    |||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||  ||||||||||| ||||| ||||||||||| ||||||    
T  30 ttaatcgtctgatgggatgacgtttaaatagttaaacggctgagggcagggacctctcatttggcttagctaaatggtccaacccatcacgatccatt 127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 370 - 518
Target Start/End: Complemental strand, 30220 - 30056
Alignment:
Q  370 ttaaccgtctgataggatgacgtttaaatagctaaacggctgagggcagagacctctcatcgggcttagctaattggtcaaacccatcacggtccatt-- 467  Q
    ||||||||||||| | ||||||||||||||||||||||||||| || ||||||||||||| || ||||||||| ||||  || |||||||||||||||      
T  30220 ttaaccgtctgatggaatgacgtttaaatagctaaacggctgaaggtagagacctctcattggacttagctaaatggttcaatccatcacggtccattta 30121  T
Q  468 --------------atcactcatattcatcaactaattagtgcctaacacaatagatcataattt 518  Q
                  ||||| ||||||||||||||||||||||  |||||||||||||||||||||    
T  30120 gaaagaatagctcaatcacacatattcatcaactaattagtgtttaacacaatagatcataattt 30056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1074 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold1074
Description:

Target: scaffold1074; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 248 - 351
Target Start/End: Complemental strand, 129 - 25
Alignment:
Q  248 gtaataaagaaggaataagaaattgtgtacgt-gtaggatttaggattcatgaaggata---gttgtcggaaggatgagagggatgactaccctcatttc 343  Q
    ||||||||||||||| ||||| |||||||| | ||| | |||||| |||||||||||||   |||||||||||||||||| ||||||||| ||||||| |    
T  129 gtaataaagaaggaagaagaatttgtgtaccttgtatg-tttagg-ttcatgaaggataactgttgtcggaaggatgaga-ggatgactaacctcattcc 33  T
Q  344 gtttagca 351  Q
    || |||||    
T  32 gtgtagca 25  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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