View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_low_41 (Length: 401)
Name: NF19520_low_41
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 358
Target Start/End: Complemental strand, 30358847 - 30358511
Alignment:
| Q |
17 |
aggaatcacgtttgggtgattttaaaattataaggaattgtgctcatgaatccattctgtccaatatagatataagaacacaccgtcccaaaattgaaaa |
116 |
Q |
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| T |
30358847 |
aggaatcacgtttgggtgattttaaaattataaggaattgtgctcatgaatccattctgtccaatatagatataagaacacacc----caaaattgaaaa |
30358752 |
T |
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| Q |
117 |
gtgaaaaatttaannnnnnnnnagtagaaaaaattaattttttattatcttgaaatagattcttatctaatattaaatttaatctgatagaaataaaact |
216 |
Q |
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| T |
30358751 |
gtgaaaaatttaatttttttt-agtagaaaaaattaattttttattatcttgaaatagattcttatctaatattaaatttaatctgatagaaataaaact |
30358653 |
T |
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| Q |
217 |
tatataagcatttgtataannnnnnnnatttgtaaaatatccataaatttcaattcaatctaatacaaatcaaacttatatctgcatgtatataatttta |
316 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30358652 |
tatataagcatttgtataattttttttatttgtaaaatatccataaatttcaattcaatctaatacaaatcaaatttatatctgcatgtatataatttta |
30358553 |
T |
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| Q |
317 |
tttatttatctataaaataatcatacaaaatgaaatataagt |
358 |
Q |
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| T |
30358552 |
tttatttatctataaaataatcatacaaaatgaaatataagt |
30358511 |
T |
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