View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_low_43 (Length: 394)
Name: NF19520_low_43
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_low_43 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 394
Target Start/End: Complemental strand, 3911757 - 3911381
Alignment:
| Q |
18 |
tttccttctagaaccacttcttcaaaaacagccacaataagagaaaaagaacaaaagggtgttcttattttcttatactagactccttcttcaactgtag |
117 |
Q |
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| T |
3911757 |
tttccttctagaaccacttcttaaaaaacagccacaataagagaaaaagaacaaaagggtgttcttattttcttatactagactccttcttcaactgtag |
3911658 |
T |
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| Q |
118 |
cactcagtaggaaccattgaaagggtaaggtgaagtgagttaaagagtattcttctgtgtattctccaaataatatagctttttatgtgaaatgaagaaa |
217 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3911657 |
tactcactaggaaccattgaaagggtaaggtgaagtgagttaaagagtattcttctgtgtattctccaaataatatagctttttatgtgaaatgaagaaa |
3911558 |
T |
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| Q |
218 |
gagttggattttcaaagcttctgaaattattatgaatgagtaataataataataagctttagatgttcaatcacatcattgtttctgccatacaaacata |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3911557 |
gagttggattttcaaagcttctgaaattattatgaatgagtaataataataataagctttagatgttcaatcacatcattgtttctgccatacaaacata |
3911458 |
T |
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| Q |
318 |
acatagctactagctagcaccaaagaaaaatgagagcaaaaaataatttcacatgtaaagttaaaaaaccatctgcc |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3911457 |
acatagctactagctagcaccaaagaaaaatgagagcaaaaaataatttcacatgtaaagttaaaaaaccatctgcc |
3911381 |
T |
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