View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_low_45 (Length: 382)
Name: NF19520_low_45
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 16195973 - 16195601
Alignment:
| Q |
1 |
gttttaagttgttttattgtactaaattagtacattaagtacaccgatacaaatgatcacatttaactatttgactttcttaaattattattgtcaacgt |
100 |
Q |
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| T |
16195973 |
gttttaagttgttttactgtactaaattagtacattaagtacactaatacaagtgatcacatttaactatttgactttctcaaattattattgtcaacgt |
16195874 |
T |
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| Q |
101 |
atcagtgtcgtgttcagtatttatgtctctattaatacttcatataacactaatcattatat-------aaaatgaacaaactaccaaaaatattatttt |
193 |
Q |
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| T |
16195873 |
gttattgtcgtatttagtatttgtgtctgaattaatacttcatatgacactaatcattatatgactgataaaatgaacaaactaccaaaaatattatttt |
16195774 |
T |
|
| Q |
194 |
aaatacttaaaatttgcaaattcttgattgaactgaaatattaatatttatgttggattactaaccttgaatgaagttgtactcctaaaaccaaacttag |
293 |
Q |
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| T |
16195773 |
aaatacttaaaatttgcaaattcttgattgaactgaaatattaatgtttatgttggattactaaccttgaatgaagttgtactcctaaaaccaaacttag |
16195674 |
T |
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| Q |
294 |
gcattttatgatccacaggttttaatatctgaaaagaacacataagtgtctcatcaacactcatcattgctcc |
366 |
Q |
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| T |
16195673 |
gcattttatgatccacaggttttaatatctgaaaagaacacataagtgtctcatcaacactcatcattgctcc |
16195601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 360
Target Start/End: Complemental strand, 35517940 - 35517894
Alignment:
| Q |
314 |
tttaatatctgaaaagaacacataagtgtctcatcaacactcatcat |
360 |
Q |
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| T |
35517940 |
tttaatatttggaaagagcacattagtgtctcatcaacactcatcat |
35517894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 360
Target Start/End: Complemental strand, 48003202 - 48003156
Alignment:
| Q |
314 |
tttaatatctgaaaagaacacataagtgtctcatcaacactcatcat |
360 |
Q |
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| T |
48003202 |
tttaatatttggaaagagcacattagtgtctcatcaacactcatcat |
48003156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 505081 - 505130
Alignment:
| Q |
41 |
acaccgatacaaatgatcacatttaactatttgactttcttaaattatta |
90 |
Q |
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| T |
505081 |
acaccgatacaaatggttacatttaattatttcattttcttaaattatta |
505130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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