View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19520_low_49 (Length: 372)

Name: NF19520_low_49
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19520_low_49
NF19520_low_49
[»] scaffold0433 (1 HSPs)
scaffold0433 (148-372)||(402-626)
[»] chr4 (13 HSPs)
chr4 (148-372)||(3860051-3860275)
chr4 (148-372)||(3868808-3869032)
chr4 (327-372)||(40487705-40487750)
chr4 (327-372)||(41470372-41470417)
chr4 (327-372)||(51967289-51967334)
chr4 (328-372)||(56424022-56424066)
chr4 (327-372)||(6487364-6487409)
chr4 (327-372)||(9972785-9972830)
chr4 (334-372)||(8084221-8084259)
chr4 (334-372)||(29469175-29469213)
chr4 (325-362)||(8563402-8563439)
chr4 (327-372)||(54561231-54561276)
chr4 (327-372)||(21486527-21486572)
[»] chr7 (8 HSPs)
chr7 (52-137)||(43518896-43518981)
chr7 (327-372)||(14732338-14732383)
chr7 (334-372)||(14741438-14741476)
chr7 (335-372)||(4639925-4639962)
chr7 (327-372)||(21024078-21024123)
chr7 (327-372)||(6268513-6268558)
chr7 (327-372)||(34656617-34656662)
chr7 (327-372)||(35313569-35313614)
[»] chr2 (12 HSPs)
chr2 (325-372)||(12877698-12877745)
chr2 (327-372)||(3991785-3991830)
chr2 (327-372)||(19948550-19948595)
chr2 (327-372)||(38413498-38413543)
chr2 (325-372)||(41978849-41978896)
chr2 (334-372)||(18899979-18900017)
chr2 (327-372)||(13898488-13898533)
chr2 (327-372)||(14039105-14039150)
chr2 (327-372)||(33262865-33262910)
chr2 (330-372)||(11153397-11153439)
chr2 (327-372)||(24025860-24025905)
chr2 (330-362)||(40829658-40829690)
[»] scaffold0246 (2 HSPs)
scaffold0246 (327-372)||(25644-25689)
scaffold0246 (328-372)||(1379-1423)
[»] chr6 (6 HSPs)
chr6 (327-372)||(8779624-8779669)
chr6 (327-372)||(7835407-7835452)
chr6 (327-372)||(31996291-31996336)
chr6 (334-372)||(1463721-1463759)
chr6 (334-372)||(6788112-6788150)
chr6 (327-372)||(10113823-10113868)
[»] chr5 (8 HSPs)
chr5 (327-372)||(25868811-25868856)
chr5 (325-372)||(33892884-33892931)
chr5 (327-372)||(2675118-2675163)
chr5 (327-372)||(21238803-21238848)
chr5 (334-372)||(7125216-7125254)
chr5 (327-372)||(34909604-34909649)
chr5 (334-372)||(24258534-24258572)
chr5 (334-372)||(28623218-28623256)
[»] chr1 (13 HSPs)
chr1 (327-372)||(1108385-1108430)
chr1 (327-372)||(7798533-7798578)
chr1 (327-372)||(33886903-33886948)
chr1 (327-372)||(33957302-33957347)
chr1 (327-372)||(18954498-18954543)
chr1 (327-362)||(34751615-34751650)
chr1 (334-372)||(1243356-1243394)
chr1 (334-372)||(4005100-4005138)
chr1 (334-372)||(8147350-8147388)
chr1 (334-372)||(9192057-9192095)
chr1 (334-372)||(41353454-41353492)
chr1 (338-372)||(11579154-11579188)
chr1 (334-372)||(51106925-51106963)
[»] chr3 (6 HSPs)
chr3 (327-372)||(9818608-9818653)
chr3 (334-372)||(8598671-8598709)
chr3 (334-372)||(49296128-49296166)
chr3 (323-362)||(16155186-16155225)
chr3 (328-372)||(2118482-2118526)
chr3 (336-372)||(53835974-53836010)
[»] chr8 (3 HSPs)
chr8 (325-372)||(41252176-41252223)
chr8 (334-372)||(19484227-19484265)
chr8 (327-372)||(1527948-1527993)
[»] scaffold1128 (1 HSPs)
scaffold1128 (330-362)||(951-983)


Alignment Details
Target: scaffold0433 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 148 - 372
Target Start/End: Complemental strand, 626 - 402
Alignment:
Q  148 ccttatatagttgaaatggaagtattgttagattttttaattttgggcacatattgaccggtcgattacatagtttttgctattttgaatctttctatta 247  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  626 ccttatatagttgaaatggaaatattgttagattttttaattttgggcacatattgacctgtcgattacatagtttttgatattttgaatctttctatta 527  T
Q  248 atatatcagaagagcattctgaattggagccataaatttcacatttaaggacgttgatatcctcttttgattaagttatcaaaaaccgagtttacctccg 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  526 atatatcagaagagcattctgaattggagccataaatttcacatttaaggacattgatatcctcttttgattaagttatcaaaaaccgagtttacctccg 427  T
Q  348 agttaacacgtttttaccacctaaa 372  Q
    ||||||||||||||| |||| ||||    
T  426 agttaacacgtttttgccacataaa 402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 148 - 372
Target Start/End: Original strand, 3860051 - 3860275
Alignment:
Q  148 ccttatatagttgaaatggaagtattgttagattttttaattttgggcacatattgaccggtcgattacatagtttttgctattttgaatctttctatta 247  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  3860051 ccttatatagttgaaatggaaatattgttagattttttaattttgggcacatattgacctgtcgattacatagtttttgatattttgaatctttctatta 3860150  T
Q  248 atatatcagaagagcattctgaattggagccataaatttcacatttaaggacgttgatatcctcttttgattaagttatcaaaaaccgagtttacctccg 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3860151 atatatcagaagagcattctgaattggagccataaatttcacatttaaggacattgatatcctcttttgattaagttatcaaaaaccgagtttacctccg 3860250  T
Q  348 agttaacacgtttttaccacctaaa 372  Q
    ||||||||||||||| |||| ||||    
T  3860251 agttaacacgtttttgccacataaa 3860275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 148 - 372
Target Start/End: Original strand, 3868808 - 3869032
Alignment:
Q  148 ccttatatagttgaaatggaagtattgttagattttttaattttgggcacatattgaccggtcgattacatagtttttgctattttgaatctttctatta 247  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  3868808 ccttatatagttgaaatggaaatattgttagattttttaattttgggcacatattgacctgtcgattacatagtttttgatattttgaatctttctatta 3868907  T
Q  248 atatatcagaagagcattctgaattggagccataaatttcacatttaaggacgttgatatcctcttttgattaagttatcaaaaaccgagtttacctccg 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3868908 atatatcagaagagcattctgaattggagccataaatttcacatttaaggacattgatatcctcttttgattaagttatcaaaaaccgagtttacctccg 3869007  T
Q  348 agttaacacgtttttaccacctaaa 372  Q
    ||||||||||||||| |||| ||||    
T  3869008 agttaacacgtttttgccacataaa 3869032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 40487705 - 40487750
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  40487705 caaaaaccgagtttacctccgagttaacacgtttttgccacctaaa 40487750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 41470372 - 41470417
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  41470372 caaaaaccgagtttacctccgagttaacacgtttttgccacctaaa 41470417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 51967334 - 51967289
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  51967334 caaaaaccgagtttacctccgagttaacacgtttttgccacctaaa 51967289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 328 - 372
Target Start/End: Original strand, 56424022 - 56424066
Alignment:
Q  328 aaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  56424022 aaaaaccgagtttacctccgagttaacacgtttttgccacctaaa 56424066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 6487364 - 6487409
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||    
T  6487364 caaaaatcgagtttacctccgagttaacacgtttttgccacctaaa 6487409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 9972830 - 9972785
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||    
T  9972830 caaaaaccgagtttacctccgagtttacacgtttttgccacctaaa 9972785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 334 - 372
Target Start/End: Complemental strand, 8084259 - 8084221
Alignment:
Q  334 cgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  8084259 cgagtttacctccgagttaacacgtttttagcacctaaa 8084221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 334 - 372
Target Start/End: Complemental strand, 29469213 - 29469175
Alignment:
Q  334 cgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  29469213 cgagtttacctccgagttaacacgtttttagcacctaaa 29469175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 325 - 362
Target Start/End: Original strand, 8563402 - 8563439
Alignment:
Q  325 atcaaaaaccgagtttacctccgagttaacacgttttt 362  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  8563402 atcaaaaaccgagtttatctccgagttaacacgttttt 8563439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 54561276 - 54561231
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    ||||||||||||||||||||||||| ||| |||||| |||||||||    
T  54561276 caaaaaccgagtttacctccgagtttacatgtttttgccacctaaa 54561231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 21486572 - 21486527
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||| |||||| ||||| |||| |||||||||    
T  21486572 caaaaaccgagtttaccttcgagtttacacggttttgccacctaaa 21486527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 52 - 137
Target Start/End: Original strand, 43518896 - 43518981
Alignment:
Q  52 ggacgatattcacaacacaagaatctctttaattgtttattatctattttaatcatgaaaaatctaattgacgccaaattagaagg 137  Q
    |||| ||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||    
T  43518896 ggaccatattcacaacacaagaatctatttgattgtttgttatctattttaatcatgaaaaatctaattgatgccaaatcagaagg 43518981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 14732338 - 14732383
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||    
T  14732338 caaaaaccaagtttacctccgagttaacacgtttttgccacctaaa 14732383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 334 - 372
Target Start/End: Complemental strand, 14741476 - 14741438
Alignment:
Q  334 cgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  14741476 cgagtttacctccgagttaacacgtttttagcacctaaa 14741438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 335 - 372
Target Start/End: Original strand, 4639925 - 4639962
Alignment:
Q  335 gagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  4639925 gagtttacctccgagttaacacgtttttagcacctaaa 4639962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 21024123 - 21024078
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||| |||||||||||||||||  ||||||||    
T  21024123 caaaaaccgagtttaccttcgagttaacacgtttttgtcacctaaa 21024078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 6268558 - 6268513
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||| ||||||| |||||||||||||||||||  ||||||||    
T  6268558 caaaaacctagtttacatccgagttaacacgtttttgacacctaaa 6268513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 34656662 - 34656617
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||| ||||| ||||| || ||||||||||||||||||||    
T  34656662 caaaaaccgaatttacttccgaatttacacgtttttaccacctaaa 34656617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 35313614 - 35313569
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||| |||||||||||||||||||| |||| ||| |||||    
T  35313614 caaaaaccgaatttacctccgagttaacacggttttgccatctaaa 35313569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 325 - 372
Target Start/End: Complemental strand, 12877745 - 12877698
Alignment:
Q  325 atcaaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  12877745 atcaaaaaccgagtttacctccgagttaacacgtttttgccacctaaa 12877698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 3991830 - 3991785
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  3991830 caaaaaccgagtttacctccgagttaacacgtttttgccacctaaa 3991785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 19948595 - 19948550
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||    
T  19948595 caaaaactgagtttacctccgagttaacacgtttttgccacctaaa 19948550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 38413498 - 38413543
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||    
T  38413498 caaaaaccgagtttacctccgagtttacacgtttttgccacctaaa 38413543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 325 - 372
Target Start/End: Complemental strand, 41978896 - 41978849
Alignment:
Q  325 atcaaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||||||||| |||||| |||||| |||||||||    
T  41978896 atcaaaaaccgagtttacctccgaattaacatgtttttgccacctaaa 41978849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 334 - 372
Target Start/End: Original strand, 18899979 - 18900017
Alignment:
Q  334 cgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  18899979 cgagtttacctccgagttaacacgtttttagcacctaaa 18900017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 13898533 - 13898488
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||| ||||||||||||||||||||||||||||| || ||||||    
T  13898533 caaaaatcgagtttacctccgagttaacacgtttttgccgcctaaa 13898488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 14039150 - 14039105
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||| ||||||||||||||||||||||||||||| || ||||||    
T  14039150 caaaaatcgagtttacctccgagttaacacgtttttgccgcctaaa 14039105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 33262910 - 33262865
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||| |||||| |||||||||| |||||||||    
T  33262910 caaaaaccgagtttaccttcgagtttacacgtttttgccacctaaa 33262865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 330 - 372
Target Start/End: Original strand, 11153397 - 11153439
Alignment:
Q  330 aaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||||||||||||| ||| | ||||||||    
T  11153397 aaaccgagtttacctccgagttaacacgatttcagcacctaaa 11153439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 24025905 - 24025860
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    ||||||||||||||| |||| |||||||||||||||  ||||||||    
T  24025905 caaaaaccgagtttatctccaagttaacacgtttttgacacctaaa 24025860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 362
Target Start/End: Complemental strand, 40829690 - 40829658
Alignment:
Q  330 aaaccgagtttacctccgagttaacacgttttt 362  Q
    |||||||||||||||||||||||||||| ||||    
T  40829690 aaaccgagtttacctccgagttaacacgatttt 40829658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 25644 - 25689
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  25644 caaaaaccgagtttacctccgagttaacacgtttttgccacctaaa 25689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 372
Target Start/End: Complemental strand, 1423 - 1379
Alignment:
Q  328 aaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    ||||||||||||||||||| |||||||| |||||| |||||||||    
T  1423 aaaaaccgagtttacctccaagttaacatgtttttgccacctaaa 1379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 8779624 - 8779669
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  8779624 caaaaaccgagtttacctccgagttaacacgtttttgccacctaaa 8779669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 7835407 - 7835452
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||    
T  7835407 caaaaaccgagtttacctccgacttaacacgtttttgccacctaaa 7835452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 31996291 - 31996336
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||    
T  31996291 caaaaatcgagtttacctccgagttaacacgtttttgccacctaaa 31996336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 334 - 372
Target Start/End: Original strand, 1463721 - 1463759
Alignment:
Q  334 cgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  1463721 cgagtttacctccgagttaacacgtttttagcacctaaa 1463759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 334 - 372
Target Start/End: Complemental strand, 6788150 - 6788112
Alignment:
Q  334 cgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  6788150 cgagtttacctccgagttaacacgtttttagcacctaaa 6788112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 10113823 - 10113868
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||| ||||||||||||||||||||||||||||||  |||||||    
T  10113823 caaaaaacgagtttacctccgagttaacacgtttttaggacctaaa 10113868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 25868856 - 25868811
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  25868856 caaaaaccgagtttacctccgagttaacacgtttttgccacctaaa 25868811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 325 - 372
Target Start/End: Original strand, 33892884 - 33892931
Alignment:
Q  325 atcaaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||    
T  33892884 atcaaaaatcgagtttacctccgagttaacacgtttttgccacctaaa 33892931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 2675118 - 2675163
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||    
T  2675118 caaaaatcgagtttacctccgagttaacacgtttttgccacctaaa 2675163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 21238803 - 21238848
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||    
T  21238803 caaaaaccgagtttacctccgagttaacacgtttttgccatctaaa 21238848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 334 - 372
Target Start/End: Original strand, 7125216 - 7125254
Alignment:
Q  334 cgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  7125216 cgagtttacctccgagttaacacgtttttagcacctaaa 7125254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 34909649 - 34909604
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||| ||||||||||||||||| ||||||||||||| |||||||||    
T  34909649 caaagaccgagtttacctccgaattaacacgtttttgccacctaaa 34909604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 334 - 372
Target Start/End: Original strand, 24258534 - 24258572
Alignment:
Q  334 cgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  24258534 cgagtttacctccgagtttacacgtttttgccacctaaa 24258572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 334 - 372
Target Start/End: Original strand, 28623218 - 28623256
Alignment:
Q  334 cgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  28623218 cgagtttatctccgagttaacacgtttttagcacctaaa 28623256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 1108430 - 1108385
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  1108430 caaaaaccgagtttacctccgagtttacacgtttttaccacctaaa 1108385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 7798578 - 7798533
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  7798578 caaaaaccgagtttacctccgagttaacacgtttttgccacctaaa 7798533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 33886903 - 33886948
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  33886903 caaaaaccgagtttacctccgagttaacacgtttttgccacctaaa 33886948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 33957347 - 33957302
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  33957347 caaaaaccgagtttacctccgagttaacacgtttttgccacctaaa 33957302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 18954543 - 18954498
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||    
T  18954543 caaaaaccgagtttacgtccgagttaacacgtttttgccacctaaa 18954498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 327 - 362
Target Start/End: Original strand, 34751615 - 34751650
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgttttt 362  Q
    ||||||||||||||||||||||||||||||||||||    
T  34751615 caaaaaccgagtttacctccgagttaacacgttttt 34751650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 334 - 372
Target Start/End: Original strand, 1243356 - 1243394
Alignment:
Q  334 cgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  1243356 cgagtttacctccgagttaacacgtttttagcacctaaa 1243394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 334 - 372
Target Start/End: Complemental strand, 4005138 - 4005100
Alignment:
Q  334 cgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  4005138 cgagtttacctccgagttaacacgtttttagcacctaaa 4005100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 334 - 372
Target Start/End: Complemental strand, 8147388 - 8147350
Alignment:
Q  334 cgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  8147388 cgagtttacctccgagttaacacgtttttagcacctaaa 8147350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 334 - 372
Target Start/End: Complemental strand, 9192095 - 9192057
Alignment:
Q  334 cgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  9192095 cgagtttacctccgagttaacacgtttttagcacctaaa 9192057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 334 - 372
Target Start/End: Complemental strand, 41353492 - 41353454
Alignment:
Q  334 cgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  41353492 cgagtttacctccgagttaacacgtttttagcacctaaa 41353454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 372
Target Start/End: Original strand, 11579154 - 11579188
Alignment:
Q  338 tttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||||||||||| ||||||||    
T  11579154 tttacctccgagttaacacgtttttagcacctaaa 11579188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 334 - 372
Target Start/End: Complemental strand, 51106963 - 51106925
Alignment:
Q  334 cgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  51106963 cgagttttcctccgagttaacacgtttttagcacctaaa 51106925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 9818608 - 9818653
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||    
T  9818608 caaaaatcgagtttacctccgagttaacacgtttttgccacctaaa 9818653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 334 - 372
Target Start/End: Complemental strand, 8598709 - 8598671
Alignment:
Q  334 cgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  8598709 cgagtttacctccgagttaacacgtttttagcacctaaa 8598671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 334 - 372
Target Start/End: Complemental strand, 49296166 - 49296128
Alignment:
Q  334 cgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  49296166 cgagtttacctccgagttaacacgtttttagcacctaaa 49296128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 323 - 362
Target Start/End: Complemental strand, 16155225 - 16155186
Alignment:
Q  323 ttatcaaaaaccgagtttacctccgagttaacacgttttt 362  Q
    ||||||||||||||||||||||| ||||||||||| ||||    
T  16155225 ttatcaaaaaccgagtttacctcagagttaacacgatttt 16155186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 372
Target Start/End: Original strand, 2118482 - 2118526
Alignment:
Q  328 aaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    ||||| ||||||||||| |||||||||||||||||  ||||||||    
T  2118482 aaaaatcgagtttaccttcgagttaacacgttttttgcacctaaa 2118526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 336 - 372
Target Start/End: Complemental strand, 53836010 - 53835974
Alignment:
Q  336 agtttacctccgagttaacacgtttttaccacctaaa 372  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  53836010 agtttacctccaagttaacacgtttttagcacctaaa 53835974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 325 - 372
Target Start/End: Complemental strand, 41252223 - 41252176
Alignment:
Q  325 atcaaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||| ||||||||| ||||||||||||||||||| |||||||||    
T  41252223 atcaaaaatcgagtttacttccgagttaacacgtttttgccacctaaa 41252176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 334 - 372
Target Start/End: Complemental strand, 19484265 - 19484227
Alignment:
Q  334 cgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  19484265 cgagtttacctccgagttaacacgtttttagcacctaaa 19484227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 1527948 - 1527993
Alignment:
Q  327 caaaaaccgagtttacctccgagttaacacgtttttaccacctaaa 372  Q
    |||||| ||||||||||||||||||||||||||||| |||| ||||    
T  1527948 caaaaatcgagtttacctccgagttaacacgtttttgccacttaaa 1527993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1128 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1128
Description:

Target: scaffold1128; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 362
Target Start/End: Original strand, 951 - 983
Alignment:
Q  330 aaaccgagtttacctccgagttaacacgttttt 362  Q
    |||||||||||||||||||||||||||| ||||    
T  951 aaaccgagtttacctccgagttaacacgatttt 983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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