View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19520_low_5 (Length: 802)

Name: NF19520_low_5
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19520_low_5
NF19520_low_5
[»] chr3 (15 HSPs)
chr3 (20-514)||(50760267-50760761)
chr3 (274-514)||(44295160-44295401)
chr3 (572-785)||(50759996-50760209)
chr3 (655-785)||(44294503-44294635)
chr3 (20-163)||(44295554-44295697)
chr3 (186-271)||(44295428-44295513)
chr3 (572-651)||(44295024-44295103)
chr3 (39-113)||(44014717-44014791)
chr3 (39-113)||(50211812-50211886)
chr3 (46-111)||(35903093-35903158)
chr3 (190-229)||(139923-139962)
chr3 (39-125)||(2413598-2413684)
chr3 (46-112)||(41057233-41057299)
chr3 (133-162)||(14548736-14548765)
chr3 (41-78)||(36887638-36887675)
[»] chr5 (15 HSPs)
chr5 (190-274)||(18857493-18857577)
chr5 (39-162)||(17368702-17368823)
chr5 (39-163)||(499650-499776)
chr5 (39-160)||(11104946-11105056)
chr5 (181-237)||(3951878-3951934)
chr5 (187-234)||(13224362-13224409)
chr5 (208-255)||(42849876-42849923)
chr5 (190-260)||(5390160-5390230)
chr5 (194-260)||(9106732-9106798)
chr5 (39-85)||(26004916-26004962)
chr5 (46-112)||(32849256-32849322)
chr5 (39-113)||(17369284-17369354)
chr5 (133-162)||(37526214-37526243)
chr5 (133-162)||(37588375-37588404)
chr5 (133-162)||(37690651-37690680)
[»] chr4 (10 HSPs)
chr4 (190-260)||(39178343-39178414)
chr4 (190-258)||(53422271-53422339)
chr4 (40-108)||(51808810-51808878)
chr4 (36-87)||(10172165-10172216)
chr4 (33-112)||(37575849-37575928)
chr4 (74-125)||(50742790-50742841)
chr4 (45-87)||(32420983-32421025)
chr4 (133-162)||(14011260-14011289)
chr4 (133-162)||(19429735-19429764)
chr4 (190-235)||(21593104-21593149)
[»] chr8 (13 HSPs)
chr8 (181-258)||(34522140-34522217)
chr8 (35-113)||(2487923-2488001)
chr8 (190-255)||(926399-926464)
chr8 (39-113)||(16162837-16162911)
chr8 (36-113)||(34770945-34771022)
chr8 (39-109)||(1664450-1664520)
chr8 (35-77)||(38874818-38874860)
chr8 (71-113)||(42215041-42215083)
chr8 (94-162)||(10120782-10120853)
chr8 (133-162)||(11183571-11183600)
chr8 (133-162)||(11795118-11795147)
chr8 (34-87)||(18331817-18331870)
chr8 (190-260)||(44426494-44426566)
[»] chr1 (16 HSPs)
chr1 (39-158)||(33723301-33723422)
chr1 (45-161)||(10199333-10199451)
chr1 (51-162)||(31517671-31517784)
chr1 (39-87)||(32958740-32958788)
chr1 (192-256)||(33527242-33527306)
chr1 (45-113)||(51929387-51929455)
chr1 (188-231)||(172277-172320)
chr1 (40-87)||(6659783-6659830)
chr1 (181-260)||(10199492-10199571)
chr1 (190-260)||(2831647-2831717)
chr1 (51-88)||(2832074-2832111)
chr1 (186-235)||(3052772-3052821)
chr1 (181-234)||(4699696-4699749)
chr1 (64-113)||(5421888-5421937)
chr1 (45-155)||(29723522-29723634)
chr1 (191-256)||(34619472-34619537)
[»] chr7 (9 HSPs)
chr7 (36-113)||(23214932-23215009)
chr7 (208-260)||(7644393-7644445)
chr7 (192-256)||(41668205-41668269)
chr7 (192-256)||(41668883-41668947)
chr7 (45-112)||(3836608-3836675)
chr7 (35-78)||(34083523-34083566)
chr7 (186-237)||(46945839-46945890)
chr7 (51-113)||(8094383-8094445)
chr7 (190-256)||(12110271-12110337)
[»] chr2 (18 HSPs)
chr2 (39-155)||(787365-787483)
chr2 (51-154)||(43530042-43530147)
chr2 (39-84)||(37448696-37448741)
chr2 (45-113)||(28803455-28803523)
chr2 (45-113)||(39622028-39622096)
chr2 (38-113)||(13866955-13867030)
chr2 (32-87)||(15370235-15370290)
chr2 (188-235)||(41039737-41039784)
chr2 (189-260)||(41817075-41817146)
chr2 (190-260)||(4090256-4090326)
chr2 (209-255)||(6887373-6887419)
chr2 (45-160)||(8820217-8820334)
chr2 (39-113)||(11513973-11514047)
chr2 (41-87)||(35809970-35810016)
chr2 (39-89)||(43259936-43259986)
chr2 (99-161)||(1647263-1647327)
chr2 (35-76)||(6772448-6772489)
chr2 (133-162)||(24098128-24098157)
[»] scaffold0590 (1 HSPs)
scaffold0590 (181-237)||(1158-1214)
[»] scaffold0275 (1 HSPs)
scaffold0275 (181-237)||(2761-2817)
[»] chr6 (8 HSPs)
chr6 (46-113)||(4308646-4308713)
chr6 (45-84)||(12111073-12111112)
chr6 (78-162)||(31686321-31686407)
chr6 (45-87)||(3738204-3738246)
chr6 (41-87)||(5977032-5977078)
chr6 (188-237)||(1810391-1810440)
chr6 (133-162)||(4420669-4420698)
chr6 (133-162)||(32171493-32171522)
[»] scaffold0199 (1 HSPs)
scaffold0199 (39-109)||(6891-6961)
[»] scaffold0022 (1 HSPs)
scaffold0022 (191-237)||(143155-143201)


Alignment Details
Target: chr3 (Bit Score: 468; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 20 - 514
Target Start/End: Complemental strand, 50760761 - 50760267
Alignment:
Q  20 tgtctctcataccaaggcatgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttca 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50760761 tgtctctcataccaaggcatgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttca 50760662  T
Q  120 tgacatttacaatctgttttcagcttatttccataagctctccgtagattatnnnnnnnnntagtgtgattttattttatcttgagtcatagaaatagct 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||    
T  50760661 tgacatttacaatctgttttcagcttatttccataagctctccgtagattataaaaaaaaatagtgtgattttattttatcttgagtcatagaaatagct 50760562  T
Q  220 tattcataagcacttatactacaagctgcaaaataagttgtcaatcaaaacaagctcctaaagttctcataatgcagatagtccccacaagttgatgtta 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50760561 tattcataagcacttatactacaagctgcaaaataagttgtcaatcaaaacaagctcctaaagttctcataatgcagatagtccccacaagttgatgtta 50760462  T
Q  320 tctttttctttctagatttcttaaactatgagcaaaattgctcctattaacatactctagtcactcttcagtcttaagtttagaagtactgtatgctaaa 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50760461 tctttttctttctagatttcttaaactatgagcaaaattgctcctattaacatactctagtcactcttcagtcttaagtttagaagtactgtatgctaaa 50760362  T
Q  420 acaagacacttacagtttcatctggtacaactgcatatctctcaaccaaggaggccaaggtttttcctatttagggggaaaatacaacagttagc 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50760361 acaagacacttacagtttcatctggtacaactgcatatctctcaaccaaggaggccaaggtttttcctatttagggggaaaatacaacagttagc 50760267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 274 - 514
Target Start/End: Complemental strand, 44295401 - 44295160
Alignment:
Q  274 ctcctaaagttctcataatgcagatagtccccacaagttgatg-ttatctttttctttctagatttcttaaactatgagcaaaattgctcctattaacat 372  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  44295401 ctcctaaagttctcataatacagatagtccccacaagttgatggttatctttttctttctagatttcttaaactatgagcaaaattgttcctactaacat 44295302  T
Q  373 actctagtcactcttcagtcttaagtttagaagtactgtatgctaaaacaagacacttacagtttcatctggtacaactgcatatctctcaaccaaggag 472  Q
    ||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| | ||||||    
T  44295301 actttagtcacccttcagtcttaagtttagaagtactgtatgctaaaacgagacacttacagcttcatctggtacaactgcatatctctcagctaaggag 44295202  T
Q  473 gccaaggtttttcctatttagggggaaaatacaacagttagc 514  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  44295201 gccaaggtttttcctatttaggggaaaaatacaacagttagc 44295160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 572 - 785
Target Start/End: Complemental strand, 50760209 - 50759996
Alignment:
Q  572 tacactatgaaatggtactaatatcaggtcaaggnnnnnnntatgatacaaaggaaaatatcattgatgagcagaataaatcacttttgtttggtttgac 671  Q
    ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50760209 tacactatgaaatggtactaatatcaggtcaaggaaaaaaatatgatacaaaggaaaatatcattgatgagcagaataaatcacttttgtttggtttgac 50760110  T
Q  672 agaaagtagctcaaatctcatgtggttggagacacaattgctgttactggaaaagacaatgtatattcttggggaagaggcgcgaatgggcaacttggaa 771  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  50760109 agaaagtagctcaaatctcatgtggttggagacacaattgctgttactggaaaagacaatgtatattcttggggaagaggcacgaatgggcaacttggaa 50760010  T
Q  772 ttggggacaccatt 785  Q
    ||||||||||||||    
T  50760009 ttggggacaccatt 50759996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 655 - 785
Target Start/End: Original strand, 44294503 - 44294635
Alignment:
Q  655 cttttgtttggtttgacagaaagtagctcaaatctcatgtggttggagacac--aattgctgttactggaaaagacaatgtatattcttggggaagaggc 752  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||    
T  44294503 cttttgtttggtttgacagaaagtagctcaaatctcatgtggttggagacacacaattgctgttactgaaaaagacaatgtatattcttggggaagaggc 44294602  T
Q  753 gcgaatgggcaacttggaattggggacaccatt 785  Q
     ||||||||||||||||||||||||||||||||    
T  44294603 acgaatgggcaacttggaattggggacaccatt 44294635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 44295697 - 44295554
Alignment:
Q  20 tgtctctcataccaaggcatgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttca 119  Q
    |||||||||| |||||| |||||||||||||||| |||||||| |||||||||||||||||||||||| ||   ||||||||||||||||||||| ||||    
T  44295697 tgtctctcatgccaaggaatgtttagattgacttgtttgagcttatctacaagcataagcacttgtgatactatttgagagaacttatgaaaactattca 44295598  T
Q  120 tgacatttacaatctgttttcagcttatttccataagctctccg 163  Q
    ||||||||| | ||||||||||||||||||||||||||||||||    
T  44295597 tgacatttatattctgttttcagcttatttccataagctctccg 44295554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 186 - 271
Target Start/End: Complemental strand, 44295513 - 44295428
Alignment:
Q  186 tgattttattttatcttgagtcatagaaatagcttattcataagcacttatactacaagctgcaaaataagttgtcaatcaaaaca 271  Q
    ||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||    
T  44295513 tgattttattttatcttgagttatagaaatagcttattcacaagcgcttatactacaagctgcaaaataagatgtcaatcaaaaca 44295428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 572 - 651
Target Start/End: Complemental strand, 44295103 - 44295024
Alignment:
Q  572 tacactatgaaatggtactaatatcaggtcaaggnnnnnnntatgatacaaaggaaaatatcattgatgagcagaataaa 651  Q
    ||||| ||||||||||||||||||||||||||||       ||| ||||||||||||| |||||||||||||||||||||    
T  44295103 tacacaatgaaatggtactaatatcaggtcaaggcaaaaaatataatacaaaggaaaacatcattgatgagcagaataaa 44295024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 44014717 - 44014791
Alignment:
Q  39 tgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 113  Q
    ||||| ||||| |||||||||| | |||||| ||||||| ||||||||| || | |||||| |||||||||||||    
T  44014717 tgtttggattggcttatttgagtttatctactagcataaacacttgtgagactgtttgagaaaacttatgaaaac 44014791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 50211886 - 50211812
Alignment:
Q  39 tgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 113  Q
    ||||| |||| |||||||| |||| |||||| | ||||||||||||| | || | ||||||||||||||||||||    
T  50211886 tgtttggattaacttattttagcttatctactaacataagcacttgtaagactgtttgagagaacttatgaaaac 50211812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 35903093 - 35903158
Alignment:
Q  46 attgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaa 111  Q
    ||||||||||||||| ||||| || | ||||||||||| |||||| | || |||||||||||||||    
T  35903093 attgacttatttgagttcatcaactaacataagcacttatgacactgtttcagagaacttatgaaa 35903158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 139962 - 139923
Alignment:
Q  190 tttattttatcttgagtcatagaaatagcttattcataag 229  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  139962 tttattttatcttgtgtaatagaaatagcttattcataag 139923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 125
Target Start/End: Original strand, 2413598 - 2413684
Alignment:
Q  39 tgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgacat 125  Q
    ||||| |||| |||||||||| ||||||||  ||||||| ||||||| |  | | |||||||| ||||||||||| | |||||||||    
T  2413598 tgtttggatttacttatttgaactcatctattagcataatcacttgtaagtctgtttgagagagcttatgaaaacggctcatgacat 2413684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 41057299 - 41057233
Alignment:
Q  46 attgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaa 112  Q
    |||| |||||||||||| ||||||| |||||||||||||||| || | ||| ||||| || ||||||    
T  41057299 attggcttatttgagcttatctacatgcataagcacttgtgagactgtttgggagaatttgtgaaaa 41057233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 162
Target Start/End: Original strand, 14548736 - 14548765
Alignment:
Q  133 ctgttttcagcttatttccataagctctcc 162  Q
    ||||||||||||||||||||||||||||||    
T  14548736 ctgttttcagcttatttccataagctctcc 14548765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 78
Target Start/End: Complemental strand, 36887675 - 36887638
Alignment:
Q  41 tttagattgacttatttgagctcatctacaagcataag 78  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  36887675 tttagattggcttatttgagcttatctacaagcataag 36887638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 190 - 274
Target Start/End: Original strand, 18857493 - 18857577
Alignment:
Q  190 tttattttatcttgagtcatagaaatagcttattcataagcacttatactacaagctgcaaaataagttgtcaatcaaaacaagc 274  Q
    ||||||||||| || || || |||||||||||||||||| |||||| ||||||||||||||||||||||||  ||| ||||||||    
T  18857493 tttattttatcgtgtgttattgaaatagcttattcataaacacttacactacaagctgcaaaataagttgtttatccaaacaagc 18857577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 162
Target Start/End: Complemental strand, 17368823 - 17368702
Alignment:
Q  39 tgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgacatttaca-at-ctgt 136  Q
    ||||| ||||||||||||| | || ||||||  ||||||||||||||||||||    ||||||||||||||||||   | ||||||| | || || | ||    
T  17368823 tgtttggattgacttatttaaacttatctactggcataagcacttgtgacacc----gagagaacttatgaaaacaacttatgacatgttcatatgcagt 17368728  T
Q  137 tttcagcttatttccataagctctcc 162  Q
    ||||||||||||||||||| ||||||    
T  17368727 tttcagcttatttccataacctctcc 17368702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 499650 - 499776
Alignment:
Q  39 tgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgacattt--acaatctgt 136  Q
    ||||| |||||||||||||||||| | ||||   ||||||||| ||| |  | | ||| |||||||||||||||| | | ||||||| |  ||||  |||    
T  499650 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatgaaaacagcttatgacatgttaacaagttgt 499749  T
Q  137 tttcagcttatttccataagctctccg 163  Q
    ||||||||||||||||||| |||||||    
T  499750 tttcagcttatttccataaactctccg 499776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 11105056 - 11104946
Alignment:
Q  39 tgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgacatttacaatctgttt 138  Q
    ||||| |||||| ||||||||||| ||| || ||||||||||||||||| ||   ||| |||||||||||||||| ||| |||           ||||||    
T  11105056 tgtttggattgatttatttgagcttatcaaccagcataagcacttgtgatactatttgggagaacttatgaaaacagtttatg-----------ctgttt 11104968  T
Q  139 tcagcttatttccataagctct 160  Q
    ||||||||||||||||||||||    
T  11104967 tcagcttatttccataagctct 11104946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 3951878 - 3951934
Alignment:
Q  181 tagtgtgattttattttatcttgagtcatagaaatagcttattcataagcacttata 237  Q
    |||| |||||| ||||||||||  || ||| ||||||||||||||||||||||||||    
T  3951878 tagtctgatttcattttatcttttgttatataaatagcttattcataagcacttata 3951934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 13224409 - 13224362
Alignment:
Q  187 gattttattttatcttgagtcatagaaatagcttattcataagcactt 234  Q
    ||||||||||||||||  || ||||||||||||||| |||||||||||    
T  13224409 gattttattttatcttttgttatagaaatagcttatacataagcactt 13224362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 42849923 - 42849876
Alignment:
Q  208 atagaaatagcttattcataagcacttatactacaagctgcaaaataa 255  Q
    ||||||||||||||| ||||||||||||| | | ||||||||||||||    
T  42849923 atagaaatagcttatacataagcacttatgccataagctgcaaaataa 42849876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 5390160 - 5390230
Alignment:
Q  190 tttattttatcttgagtcatagaaatagcttattcataagcacttatactacaagctgcaaaataagttgt 260  Q
    |||||||||||||| ||  ||||||||| ||||||||| ||  |||| ||| |||||||||| ||||||||    
T  5390160 tttattttatcttgcgtagtagaaatagtttattcatacgcgtttatgctataagctgcaaattaagttgt 5390230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 9106798 - 9106732
Alignment:
Q  194 ttttatcttgagtcatagaaatagcttattcataagcacttatactacaagctgcaaaataagttgt 260  Q
    |||||||||| || |||||||| ||||||||||||   ||||| ||  |||||||||||||||||||    
T  9106798 ttttatcttgggttatagaaattgcttattcataaatgcttatgctttaagctgcaaaataagttgt 9106732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 26004916 - 26004962
Alignment:
Q  39 tgtttagattgacttatttgagctcatctacaagcataagcacttgt 85  Q
    ||||| ||||||||||||| |||| |||||| |||||||||||||||    
T  26004916 tgtttggattgacttattttagcttatctactagcataagcacttgt 26004962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 32849322 - 32849256
Alignment:
Q  46 attgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaa 112  Q
    |||||||||||| |||| |||||| | |||||||||||||||  | | ||| |||||||||||||||    
T  32849322 attgacttatttaagcttatctactatcataagcacttgtgaggctgtttgggagaacttatgaaaa 32849256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 17369354 - 17369284
Alignment:
Q  39 tgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 113  Q
    ||||| ||||||||||||||| || ||||||   ||||| ||||||||||||    |||||||||||||||||||    
T  17369354 tgtttggattgacttatttgaacttatctactgacataatcacttgtgacac----tgagagaacttatgaaaac 17369284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 162
Target Start/End: Original strand, 37526214 - 37526243
Alignment:
Q  133 ctgttttcagcttatttccataagctctcc 162  Q
    ||||||||||||||||||||||||||||||    
T  37526214 ctgttttcagcttatttccataagctctcc 37526243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 162
Target Start/End: Original strand, 37588375 - 37588404
Alignment:
Q  133 ctgttttcagcttatttccataagctctcc 162  Q
    ||||||||||||||||||||||||||||||    
T  37588375 ctgttttcagcttatttccataagctctcc 37588404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 162
Target Start/End: Original strand, 37690651 - 37690680
Alignment:
Q  133 ctgttttcagcttatttccataagctctcc 162  Q
    ||||||||||||||||||||||||||||||    
T  37690651 ctgttttcagcttatttccataagctctcc 37690680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 39178343 - 39178414
Alignment:
Q  190 tttattttatcttgagtcatagaaatagcttat-tcataagcacttatactacaagctgcaaaataagttgt 260  Q
    ||||||||||||||||| ||||||||||||||| | |||||||||||||||| |||||| ||||||||||||    
T  39178343 tttattttatcttgagttatagaaatagcttatatgataagcacttatactataagctgtaaaataagttgt 39178414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 53422339 - 53422271
Alignment:
Q  190 tttattttatcttgagtcatagaaatagcttattcataagcacttatactacaagctgcaaaataagtt 258  Q
    |||||||||||||| ||  |||||||||||||||||||||  ||||| ||| |||||||||||| ||||    
T  53422339 tttattttatcttgtgttgtagaaatagcttattcataagagcttatgctataagctgcaaaattagtt 53422271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 51808810 - 51808878
Alignment:
Q  40 gtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatg 108  Q
    |||||||||||||||||||| || |||||| || | ||||||||| || || ||||| |||||||||||    
T  51808810 gtttagattgacttatttgaacttatctactagtagaagcacttgcgagactgcttgggagaacttatg 51808878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 10172216 - 10172165
Alignment:
Q  36 gcatgtttagattgacttatttgagctcatctacaagcataagcacttgtga 87  Q
    |||||||| |||||| ||||||||||| ||||| | ||||||||||||||||    
T  10172216 gcatgtttggattgatttatttgagcttatctatatgcataagcacttgtga 10172165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 37575849 - 37575928
Alignment:
Q  33 aaggcatgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaa 112  Q
    ||||| ||||| |||||||||||||||| | |||| | ||||||| | || ||||||  | |||||||||||||||||||    
T  37575849 aaggcttgtttggattgacttatttgagtttatctgctagcataaactctcgtgacattgtttgagagaacttatgaaaa 37575928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 50742790 - 50742841
Alignment:
Q  74 ataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgacat 125  Q
    |||||||||||| | || | |||||||||||||||||||| |||||||||||    
T  50742790 ataagcacttgttagactgtttgagagaacttatgaaaacagttcatgacat 50742841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 32420983 - 32421025
Alignment:
Q  45 gattgacttatttgagctcatctacaagcataagcacttgtga 87  Q
    |||||||||||||||||| | |||| |||||||||||||||||    
T  32420983 gattgacttatttgagcttacctactagcataagcacttgtga 32421025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 162
Target Start/End: Complemental strand, 14011289 - 14011260
Alignment:
Q  133 ctgttttcagcttatttccataagctctcc 162  Q
    ||||||||||||||||||||||||||||||    
T  14011289 ctgttttcagcttatttccataagctctcc 14011260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 162
Target Start/End: Complemental strand, 19429764 - 19429735
Alignment:
Q  133 ctgttttcagcttatttccataagctctcc 162  Q
    ||||||||||||||||||||||||||||||    
T  19429764 ctgttttcagcttatttccataagctctcc 19429735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 21593104 - 21593149
Alignment:
Q  190 tttattttatcttgagtcatagaaatagcttattcataagcactta 235  Q
    ||||||||||||| ||| |||||||||| |||| ||||||||||||    
T  21593104 tttattttatctttagttatagaaatagtttatacataagcactta 21593149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 8e-17; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 34522140 - 34522217
Alignment:
Q  181 tagtgtgattttattttatcttgagtcatagaaatagcttattcataagcacttatactacaagctgcaaaataagtt 258  Q
    |||| ||| |||||||||||||| |||||||||||||||||||||||||| ||||| ||  ||| |||||||||||||    
T  34522140 tagtttgactttattttatcttgtgtcatagaaatagcttattcataagcgcttatgctgtaagttgcaaaataagtt 34522217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 113
Target Start/End: Original strand, 2487923 - 2488001
Alignment:
Q  35 ggcatgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 113  Q
    ||||||||| ||||| |||||||||| ||||||||   ||||||||||||||| || | ||| ||||||||||||||||    
T  2487923 ggcatgtttggattggcttatttgagttcatctactgacataagcacttgtgagactgtttgggagaacttatgaaaac 2488001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 926464 - 926399
Alignment:
Q  190 tttattttatcttgagtcatagaaatagcttattcataagcacttatactacaagctgcaaaataa 255  Q
    |||||||||||||| || |||||||||||||||||||| || ||||| |||  |||||||||||||    
T  926464 tttattttatcttgtgttatagaaatagcttattcatatgcgcttatgctattagctgcaaaataa 926399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 16162911 - 16162837
Alignment:
Q  39 tgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 113  Q
    ||||| ||||| |||||||||| | |||||| ||||||| ||||||||| || | |||||| |||||||||||||    
T  16162911 tgtttggattggcttatttgagtttatctactagcataaacacttgtgagactgtttgagaaaacttatgaaaac 16162837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 34771022 - 34770945
Alignment:
Q  36 gcatgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 113  Q
    |||||||| | |||||||||||||| | |||| | ||||||||||||||||| || | |||||||| | |||||||||    
T  34771022 gcatgtttggtttgacttatttgagtttatctgctagcataagcacttgtgaaactgtttgagagatcctatgaaaac 34770945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 1664520 - 1664450
Alignment:
Q  39 tgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatga 109  Q
    ||||||||| |||||||||||| | |||||| ||||||| ||||||||| || | ||| |||| |||||||    
T  1664520 tgtttagatggacttatttgagtttatctactagcataaacacttgtgagactgtttgggagagcttatga 1664450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 38874860 - 38874818
Alignment:
Q  35 ggcatgtttagattgacttatttgagctcatctacaagcataa 77  Q
    |||||||||||||||||||||||||||| || ||| |||||||    
T  38874860 ggcatgtttagattgacttatttgagcttatttactagcataa 38874818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 42215041 - 42215083
Alignment:
Q  71 agcataagcacttgtgacaccgcttgagagaacttatgaaaac 113  Q
    |||||||||||||||||||| | ||| ||||||||||||||||    
T  42215041 agcataagcacttgtgacactgtttgggagaacttatgaaaac 42215083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 10120853 - 10120782
Alignment:
Q  94 ttgagagaacttatgaaaactgttcatgacatttacaat---ctgttttcagcttatttccataagctctcc 162  Q
    |||||||||||||||||||| | | ||||||||||  ||   ||||||||||||||||| |||||| |||||    
T  10120853 ttgagagaacttatgaaaacagcttatgacatttatcatatgctgttttcagcttattttcataagttctcc 10120782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 162
Target Start/End: Complemental strand, 11183600 - 11183571
Alignment:
Q  133 ctgttttcagcttatttccataagctctcc 162  Q
    ||||||||||||||||||||||||||||||    
T  11183600 ctgttttcagcttatttccataagctctcc 11183571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 162
Target Start/End: Complemental strand, 11795147 - 11795118
Alignment:
Q  133 ctgttttcagcttatttccataagctctcc 162  Q
    ||||||||||||||||||||||||||||||    
T  11795147 ctgttttcagcttatttccataagctctcc 11795118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 18331870 - 18331817
Alignment:
Q  34 aggcatgtttagattgacttatttgagctcatctacaagcataagcacttgtga 87  Q
    |||| ||||| ||||||||||||||| || |||||| | |||||||||||||||    
T  18331870 aggcttgtttggattgacttatttgatcttatctactaacataagcacttgtga 18331817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 44426494 - 44426566
Alignment:
Q  190 tttattttatcttgagtcatagaaatagcttatt--cataagcacttatactacaagctgcaaaataagttgt 260  Q
    |||||||| ||||  || ||||||| ||||||||  ||||||||||||| ||| |||||||||| ||||||||    
T  44426494 tttattttgtcttttgtaatagaaacagcttattttcataagcacttatgctataagctgcaaattaagttgt 44426566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 158
Target Start/End: Original strand, 33723301 - 33723422
Alignment:
Q  39 tgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgacatttaca--atctgt 136  Q
    ||||| ||||||||||||||| || |||||| | ||||| ||||||||| || ||||| || |||||||| |||| | ||||||||| | ||  |  |||    
T  33723301 tgtttggattgacttatttgaacttatctactaccataaacacttgtgagactgcttgggaaaacttatggaaacagctcatgacatgttcatgagatgt 33723400  T
Q  137 tttcagcttatttccataagct 158  Q
    ||||||||||||||||||||||    
T  33723401 tttcagcttatttccataagct 33723422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 161
Target Start/End: Original strand, 10199333 - 10199451
Alignment:
Q  45 gattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgaca--tttacaatctgttttcag 142  Q
    |||||||||||||||||| |||||| | ||||||||||||||||||   ||| ||||||| |||||||  | | ||||||  || | ||  |||||||||    
T  10199333 gattgacttatttgagcttatctactaacataagcacttgtgacactatttgggagaactcatgaaaatagcttatgacatgttcataagttgttttcag 10199432  T
Q  143 cttatttccataagctctc 161  Q
    ||||||| |||||||||||    
T  10199433 cttattttcataagctctc 10199451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 162
Target Start/End: Original strand, 31517671 - 31517784
Alignment:
Q  51 cttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgaca--tttacaatctgttttcagcttatt 148  Q
    |||||||||||| || |||  |||||||||||||||| || | ||| |||||||||| |||||   ||||||||  || | || ||||||||||||||||    
T  31517671 cttatttgagcttatttactggcataagcacttgtgagactgtttgggagaacttatcaaaacaactcatgacatgttcataagctgttttcagcttatt 31517770  T
Q  149 tccataagctctcc 162  Q
    | ||||||||||||    
T  31517771 ttcataagctctcc 31517784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 32958788 - 32958740
Alignment:
Q  39 tgtttagattgacttatttgagctcatctacaagcataagcacttgtga 87  Q
    |||||||||||||||||||||||| ||||||   |||||||||||||||    
T  32958788 tgtttagattgacttatttgagcttatctactgtcataagcacttgtga 32958740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 33527242 - 33527306
Alignment:
Q  192 tattttatcttgagtcatagaaatagcttattcataagcacttatactacaagctgcaaaataag 256  Q
    |||||||||||  ||  |||||||||||||||||||||| ||||| ||  |||||||||||||||    
T  33527242 tattttatcttttgttttagaaatagcttattcataagcgcttatgctctaagctgcaaaataag 33527306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 51929387 - 51929455
Alignment:
Q  45 gattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 113  Q
    ||||||||| |||||||| ||||||   ||||||||| |||||||| | || |||||||||||||||||    
T  51929387 gattgacttttttgagcttatctactgacataagcacctgtgacactgtttaagagaacttatgaaaac 51929455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 172320 - 172277
Alignment:
Q  188 attttattttatcttgagtcatagaaatagcttattcataagca 231  Q
    ||||||||||||||| ||| ||||||||||||||| ||||||||    
T  172320 attttattttatctttagttatagaaatagcttatacataagca 172277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 6659830 - 6659783
Alignment:
Q  40 gtttagattgacttatttgagctcatctacaagcataagcacttgtga 87  Q
    |||| ||||||||||||| |||| |||||| |||||||||||||||||    
T  6659830 gtttggattgacttattttagcttatctactagcataagcacttgtga 6659783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 260
Target Start/End: Original strand, 10199492 - 10199571
Alignment:
Q  181 tagtgtgattttattttatcttgagtcatagaaatagcttattcataagcacttatactacaagctgcaaaataagttgt 260  Q
    |||| ||| |||||||||||||| || ||||||||| |||||  |||||   |||| ||| |||||||||||||||||||    
T  10199492 tagtttgactttattttatcttgggttatagaaataacttatctataagtgtttatgctataagctgcaaaataagttgt 10199571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 2831717 - 2831647
Alignment:
Q  190 tttattttatcttgagtcatagaaatagcttattcataagcacttatactacaagctgcaaaataagttgt 260  Q
    ||||||||| |||| || || ||||||||||||||| |||| ||||| ||| |||| |||||| |||||||    
T  2831717 tttattttagcttgtgttattgaaatagcttattcacaagcgcttatgctataagcagcaaaacaagttgt 2831647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 2832111 - 2832074
Alignment:
Q  51 cttatttgagctcatctacaagcataagcacttgtgac 88  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  2832111 cttatttgagcttatctactagcataagcacttgtgac 2832074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 3052772 - 3052821
Alignment:
Q  186 tgattttattttatcttgagtcatagaaatagcttattcataagcactta 235  Q
    ||||||||||||||||| ||| ||||||||||||||  ||||||| ||||    
T  3052772 tgattttattttatctttagttatagaaatagcttacacataagcgctta 3052821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 4699696 - 4699749
Alignment:
Q  181 tagtgtgattttattttatcttgagtcatagaaatagcttattcataagcactt 234  Q
    |||| ||| ||||||| |||||| ||  ||||||||||||||||||||||||||    
T  4699696 tagtttgactttatttaatcttgtgttgtagaaatagcttattcataagcactt 4699749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 5421888 - 5421937
Alignment:
Q  64 atctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 113  Q
    |||| ||||||||||||||||||| |||| ||| |||||||||| |||||    
T  5421888 atcttcaagcataagcacttgtgagaccgtttgtgagaacttataaaaac 5421937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 155
Target Start/End: Complemental strand, 29723634 - 29723522
Alignment:
Q  45 gattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgacattt--acaatctgttttcag 142  Q
    |||||||| ||||||||| || ||| ||||||||||||||||| || | |||| |||||| ||| |||| | | ||||||| |  | || |||||||||     
T  29723634 gattgactaatttgagcttatttactagcataagcacttgtgatacagtttgaaagaactaatggaaacagcttatgacatgtccataaactgttttcaa 29723535  T
Q  143 cttatttccataa 155  Q
    ||||||| |||||    
T  29723534 cttatttacataa 29723522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 34619472 - 34619537
Alignment:
Q  191 ttattttatcttgagtcatagaaatagcttattcataagcacttatactacaagctgcaaaataag 256  Q
    ||||||||||||  || |||||||| |||||| |||||||| |||| ||| |||||||||| ||||    
T  34619472 ttattttatcttttgttatagaaatggcttatacataagcaattatgctataagctgcaaattaag 34619537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 23215009 - 23214932
Alignment:
Q  36 gcatgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 113  Q
    |||||||| ||||||||||||||| || |||||| ||||||| ||||| ||| || | ||||||||| ||||||||||    
T  23215009 gcatgtttggattgacttatttgaccttatctactagcataaacacttatgagactgtttgagagaatttatgaaaac 23214932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 7644393 - 7644445
Alignment:
Q  208 atagaaatagcttattcataagcacttatactacaagctgcaaaataagttgt 260  Q
    ||||||||||||||||||||||||||||| ||| |||| | ||||||||||||    
T  7644393 atagaaatagcttattcataagcacttatgctataagccgaaaaataagttgt 7644445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 41668205 - 41668269
Alignment:
Q  192 tattttatcttgagtcatagaaatagcttattcataagcacttatactacaagctgcaaaataag 256  Q
    |||||||||||| || ||||||||||||||||||||||| ||||| |||   |||||||||||||    
T  41668205 tattttatcttgggttatagaaatagcttattcataagcgcttatgctatcggctgcaaaataag 41668269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 41668883 - 41668947
Alignment:
Q  192 tattttatcttgagtcatagaaatagcttattcataagcacttatactacaagctgcaaaataag 256  Q
    |||||||||||| || ||||||||||||||||||||||| ||||| |||   |||||||||||||    
T  41668883 tattttatcttgggttatagaaatagcttattcataagcgcttatgctatcggctgcaaaataag 41668947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 3836608 - 3836675
Alignment:
Q  45 gattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaa 112  Q
    ||||| |||||||||||| ||||||  || ||||||||||||| || | ||| |||||||||||||||    
T  3836608 gattgccttatttgagcttatctactggcttaagcacttgtgaaactgtttgggagaacttatgaaaa 3836675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 34083523 - 34083566
Alignment:
Q  35 ggcatgtttagattgacttatttgagctcatctacaagcataag 78  Q
    ||||||||| |||||||||||||||||||||||||  |||||||    
T  34083523 ggcatgtttggattgacttatttgagctcatctacttgcataag 34083566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 46945890 - 46945839
Alignment:
Q  186 tgattttattttatcttgagtcatagaaatagcttattcataagcacttata 237  Q
    |||||| ||||||||||| || ||| |||||||||||||||||||| |||||    
T  46945890 tgatttgattttatcttgtgttatacaaatagcttattcataagcatttata 46945839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 113
Target Start/End: Complemental strand, 8094445 - 8094383
Alignment:
Q  51 cttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 113  Q
    |||||||||||| |||||| ||||||||||||||||| ||   ||||||||  ||||||||||    
T  8094445 cttatttgagcttatctactagcataagcacttgtgagactatttgagagattttatgaaaac 8094383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 12110337 - 12110271
Alignment:
Q  190 tttattttatcttgagtcatagaaatagcttattcataagcacttatactacaagctgcaaaataag 256  Q
    |||||||||||||| || |||||||||| |||||||||||  ||||| ||| ||| |||||| ||||    
T  12110337 tttattttatcttgtgtaatagaaataggttattcataagtgcttatgctataagttgcaaattaag 12110271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000008; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 155
Target Start/End: Complemental strand, 787483 - 787365
Alignment:
Q  39 tgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgacattt--acaatctgt 136  Q
    ||||| |||||  ||||| ||||  ||||||  ||||||||||||||||||| | ||| |||||||||||||||| | | ||||||| |  | || ||||    
T  787483 tgtttggattggattattcgagcatatctactggcataagcacttgtgacactgtttgtgagaacttatgaaaacagcttatgacatgtccataagctgt 787384  T
Q  137 tttcagcttatttccataa 155  Q
    ||||||||||| |||||||    
T  787383 tttcagcttatctccataa 787365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 154
Target Start/End: Original strand, 43530042 - 43530147
Alignment:
Q  51 cttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgaca--tttacaatctgttttcagcttatt 148  Q
    |||||||||||| |||||| | |||| |||||||||| |  ||||| |||||||||||||||| | | ||||||  || |||| || |||||| ||||||    
T  43530042 cttatttgagctaatctactaacatatgcacttgtgagagtgcttgggagaacttatgaaaacagattatgacatgttcacaagctattttcaacttatt 43530141  T
Q  149 tccata 154  Q
    ||||||    
T  43530142 tccata 43530147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 37448696 - 37448741
Alignment:
Q  39 tgtttagattgacttatttgagctcatctacaagcataagcacttg 84  Q
    |||||||||||||||||||||||| |||||| |||||||| |||||    
T  37448696 tgtttagattgacttatttgagcttatctaccagcataagaacttg 37448741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 28803455 - 28803523
Alignment:
Q  45 gattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 113  Q
    |||||||||||||||||| ||||||  |||||||||| ||||| || | |||||||||| |||| ||||    
T  28803455 gattgacttatttgagcttatctaccggcataagcacatgtgagactgtttgagagaacatatggaaac 28803523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 39622096 - 39622028
Alignment:
Q  45 gattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 113  Q
    |||| |||||||||| || ||||||  | ||||||||||| ||||| | ||||||||||||||||||||    
T  39622096 gatttacttatttgaacttatctacttgtataagcacttgcgacactgtttgagagaacttatgaaaac 39622028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 13867030 - 13866955
Alignment:
Q  38 atgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 113  Q
    |||||| ||||||| |||||||||| ||||||   ||||| ||||||||| || | ||||||||||||| ||||||    
T  13867030 atgtttggattgacctatttgagcttatctactgccataaacacttgtgagactgtttgagagaacttaagaaaac 13866955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 15370235 - 15370290
Alignment:
Q  32 caaggcatgtttagattgacttatttgagctcatctacaagcataagcacttgtga 87  Q
    |||||| ||||| |||||||||||||||||| ||||||  ||||||||| ||||||    
T  15370235 caaggcctgtttggattgacttatttgagcttatctactggcataagcatttgtga 15370290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 41039737 - 41039784
Alignment:
Q  188 attttattttatcttgagtcatagaaatagcttattcataagcactta 235  Q
    |||||||||||||||  |||| ||||||||||||| ||||||||||||    
T  41039737 attttattttatcttttgtcacagaaatagcttatacataagcactta 41039784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 260
Target Start/End: Complemental strand, 41817146 - 41817075
Alignment:
Q  189 ttttattttatcttgagtcatagaaatagcttattcataagcacttatactacaagctgcaaaataagttgt 260  Q
    ||||| ||| ||||| || |||||||||||||||||||||||| ||||  || |||  ||||||||||||||    
T  41817146 ttttaatttctcttgtgttatagaaatagcttattcataagcatttatgttataagtggcaaaataagttgt 41817075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 4090326 - 4090256
Alignment:
Q  190 tttattttatcttgagtcatagaaatagcttattcataagcacttatactacaagctgcaaaataagttgt 260  Q
    |||||||||||||| || || |||||||||||||||||  | ||||| ||  ||||| |||||||||||||    
T  4090326 tttattttatcttgtgttatggaaatagcttattcatacacccttatgctttaagcttcaaaataagttgt 4090256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 6887373 - 6887419
Alignment:
Q  209 tagaaatagcttattcataagcacttatactacaagctgcaaaataa 255  Q
    |||||||||||||||||||||| |||||  || ||||||||||||||    
T  6887373 tagaaatagcttattcataagcgcttattatataagctgcaaaataa 6887419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 160
Target Start/End: Original strand, 8820217 - 8820334
Alignment:
Q  45 gattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgacattt--acaatctgttttcag 142  Q
    ||||||||||||||||   |||||| |  ||||||||||  || || |||| ||||| |||||| |||| | |  |||||| |  |||| ||||||||||    
T  8820217 gattgacttatttgagtatatctactaatataagcactttcgagactgcttaagagaccttatggaaacagcttctgacatgttcacaagctgttttcag 8820316  T
Q  143 cttatttccataagctct 160  Q
    ||||||||||||||||||    
T  8820317 cttatttccataagctct 8820334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 11514047 - 11513973
Alignment:
Q  39 tgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 113  Q
    ||||| |||||  ||||||||| | |||||| ||||||||||||||||| || | || ||||| |||||||||||    
T  11514047 tgtttggattggtttatttgagattatctactagcataagcacttgtgagactgttttagagagcttatgaaaac 11513973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 35810016 - 35809970
Alignment:
Q  41 tttagattgacttatttgagctcatctacaagcataagcacttgtga 87  Q
    |||||||||||||||||||||| ||||||  ||||||||| ||||||    
T  35810016 tttagattgacttatttgagcttatctaccggcataagcagttgtga 35809970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 43259986 - 43259936
Alignment:
Q  39 tgtttagattgacttatttgagctcatctacaagcataagcacttgtgaca 89  Q
    ||||| ||||| ||||||||| || |||||| |||||||||||||||||||    
T  43259986 tgtttggattggcttatttgaacttatctactagcataagcacttgtgaca 43259936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 161
Target Start/End: Complemental strand, 1647327 - 1647263
Alignment:
Q  99 agaacttatgaaaactgttcatgacat--ttacaatctgttttcagcttatttccataagctctc 161  Q
    ||||||||||||||| | | |||||||  | | || |||||||||||||||||||||||||||||    
T  1647327 agaacttatgaaaacagcttatgacatgctcataagctgttttcagcttatttccataagctctc 1647263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 6772448 - 6772489
Alignment:
Q  35 ggcatgtttagattgacttatttgagctcatctacaagcata 76  Q
    ||||||||| |||||||||||||||||| ||||||| |||||    
T  6772448 ggcatgtttggattgacttatttgagcttatctacaggcata 6772489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 162
Target Start/End: Complemental strand, 24098157 - 24098128
Alignment:
Q  133 ctgttttcagcttatttccataagctctcc 162  Q
    ||||||||||||||||||||||||||||||    
T  24098157 ctgttttcagcttatttccataagctctcc 24098128  T

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Target: scaffold0590 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 1158 - 1214
Alignment:
Q  181 tagtgtgattttattttatcttgagtcatagaaatagcttattcataagcacttata 237  Q
    |||| ||| |||||||||||||  || ||||||||||||||| ||||||||||||||    
T  1158 tagtttgactttattttatcttttgttatagaaatagcttatacataagcacttata 1214  T

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Target: scaffold0275 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 2817 - 2761
Alignment:
Q  181 tagtgtgattttattttatcttgagtcatagaaatagcttattcataagcacttata 237  Q
    |||| ||| |||||||||||||  || ||||||||||||||| ||||||||||||||    
T  2817 tagtttgactttattttatcttttgttatagaaatagcttatacataagcacttata 2761  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 4308713 - 4308646
Alignment:
Q  46 attgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 113  Q
    ||||||||||||||| | || |||  ||||||||||| ||||||| | ||| ||||||||||||||||    
T  4308713 attgacttatttgagttaatttactggcataagcactagtgacactgtttgggagaacttatgaaaac 4308646  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 84
Target Start/End: Complemental strand, 12111112 - 12111073
Alignment:
Q  45 gattgacttatttgagctcatctacaagcataagcacttg 84  Q
    |||||||||||||||||| |||||| ||||||||||||||    
T  12111112 gattgacttatttgagcttatctactagcataagcacttg 12111073  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 31686321 - 31686407
Alignment:
Q  78 gcacttgtgacaccgcttgagagaacttatgaaaactgttcatgaca--tttacaatctgttttcagcttatttccataagctctcc 162  Q
    ||||||||||||  | |||||||||||||| |||||   | ||||||  |||| |||||||||||||||||| ||| ||||||||||    
T  31686321 gcacttgtgacattgtttgagagaacttatcaaaacaacttatgacaagtttataatctgttttcagcttatgtccgtaagctctcc 31686407  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 3738246 - 3738204
Alignment:
Q  45 gattgacttatttgagctcatctacaagcataagcacttgtga 87  Q
    |||||||||||||||| | |||||| |||||||||||||||||    
T  3738246 gattgacttatttgagtttatctactagcataagcacttgtga 3738204  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 5977078 - 5977032
Alignment:
Q  41 tttagattgacttatttgagctcatctacaagcataagcacttgtga 87  Q
    |||||||||||||||| ||||| |||||| |||||||||| ||||||    
T  5977078 tttagattgacttattcgagcttatctactagcataagcatttgtga 5977032  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 1810391 - 1810440
Alignment:
Q  188 attttattttatcttgagtcatagaaatagcttattcataagcacttata 237  Q
    |||||||||||||||  || ||||||||||||| | ||||||||||||||    
T  1810391 attttattttatcttttgttatagaaatagcttttgcataagcacttata 1810440  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 162
Target Start/End: Complemental strand, 4420698 - 4420669
Alignment:
Q  133 ctgttttcagcttatttccataagctctcc 162  Q
    ||||||||||||||||||||||||||||||    
T  4420698 ctgttttcagcttatttccataagctctcc 4420669  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 162
Target Start/End: Complemental strand, 32171522 - 32171493
Alignment:
Q  133 ctgttttcagcttatttccataagctctcc 162  Q
    ||||||||||||||||||||||||||||||    
T  32171522 ctgttttcagcttatttccataagctctcc 32171493  T

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Target: scaffold0199 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 6961 - 6891
Alignment:
Q  39 tgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatga 109  Q
    ||||||||| |||||||||||| | |||||| ||||||| ||||||||| || | ||| |||| |||||||    
T  6961 tgtttagatggacttatttgagtttatctactagcataaacacttgtgagactgtttgggagagcttatga 6891  T

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Target: scaffold0022 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 143155 - 143201
Alignment:
Q  191 ttattttatcttgagtcatagaaatagcttattcataagcacttata 237  Q
    ||||||||||||| || |||||||||||| |||||||||| ||||||    
T  143155 ttattttatcttgtgttatagaaatagctaattcataagcgcttata 143201  T

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