View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_low_50 (Length: 353)
Name: NF19520_low_50
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_low_50 |
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| [»] scaffold0632 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 36485989 - 36486218
Alignment:
| Q |
19 |
gttccaacctccatcatcacggccacttacctccactacatcagccaccatctccaacttgagaatcttcttcactcatgtttcaaggtattttttcatt |
118 |
Q |
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|||||| |||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36485989 |
gttccagcctctatcatcacagccgcttacctccactacatcagccaccatctccaacttgagaatcttcttcactcatgtttcaaggtcttttttcatt |
36486088 |
T |
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| Q |
119 |
tattaattaatgagcttaatttcactacaacttacaaaacgtttgatcagttatatagtatatatcttcatgaaaatggactagaacaaaaagaacaaga |
218 |
Q |
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| T |
36486089 |
tattaattcatgagcttaatttcactacaacttacaaaacgtttgatcagttatatagtatatatcttcatgaaaatggactagaacaaaaagaacaaga |
36486188 |
T |
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| Q |
219 |
aagtgaagagagtttgtagatgatatgtgttg |
250 |
Q |
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|||||| |||||||||||||||||||||||| |
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| T |
36486189 |
aagtga--agagtttgtagatgatatgtgttg |
36486218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 28539342 - 28539570
Alignment:
| Q |
20 |
ttccaacctccatcatcacggccacttacctccactacatcagccaccatctccaacttgagaatcttcttcactcatgtttcaaggtattttttcattt |
119 |
Q |
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||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
28539342 |
ttccagcctccatcatcacggccgcttacctccagtacatcagccaccatctccaacttgagaatcttcttcactcatgtttcaagatcttttttcattt |
28539441 |
T |
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| Q |
120 |
attaattaatgagcttaatttcactacaacttacaaaacgtttgatcagttatatagtatatatcttcatgaaaatggactagaacaaaaagaacaagaa |
219 |
Q |
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| T |
28539442 |
attaattcatgagcttaatttcactacaacttacaaaacgtttgatcagttatatagtatatatcttcatgaaaatggactagaataaaaagaacaagaa |
28539541 |
T |
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| Q |
220 |
agtgaagagagtttgtagatgatatgtgttg |
250 |
Q |
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| T |
28539542 |
agtga--agagtttgtagatgatatgtgttg |
28539570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 31600393 - 31600164
Alignment:
| Q |
19 |
gttccaacctccatcatcacggccacttacctccactacatcagccaccatctccaacttgagaatcttcttcactcatgtttcaaggtattttttcatt |
118 |
Q |
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|||||| |||| |||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31600393 |
gttccagcctcaatcatcacagacgcttacctccactacatcagccaccatctccaacttgagaatcttcttcactcatgtttcaaggtcttttttcatt |
31600294 |
T |
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| Q |
119 |
tattaattaatgagcttaatttcactacaacttacaaaacgtttgatcagttatatagtatatatcttcatgaaaatggactagaacaaaaagaacaaga |
218 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31600293 |
tattaattcatgagcttaatttcactacaacttacagaacgtttgatcagttatatagtatatatcttcatgaaaatggactagaacaaaaagaacaaga |
31600194 |
T |
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| Q |
219 |
aagtgaagagagtttgtagatgatatgtgttg |
250 |
Q |
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| T |
31600193 |
aagtga--agagtttgtagatgatatgtgttg |
31600164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0632 (Bit Score: 131; Significance: 7e-68; HSPs: 1)
Name: scaffold0632
Description:
Target: scaffold0632; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 49 - 202
Target Start/End: Original strand, 2518 - 2672
Alignment:
| Q |
49 |
ctccactacatcagccaccatctccaacttgagaatcttcttcactcatgtttcaaggtatttt-ttcatttattaattaatgagcttaatttcactaca |
147 |
Q |
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||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||| |
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| T |
2518 |
ctccactacatcagccaccatttccaacttgaggatcttcttcactcatgtttcaaggtctttttttcatttattaattcatgagcttaatttcactaca |
2617 |
T |
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| Q |
148 |
acttacaaaacgtttgatcagttatatagtatatatcttcatgaaaatggactag |
202 |
Q |
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| T |
2618 |
acttacaaaacgtttgatcagttatatagtatatatcttcatgaaaatggactag |
2672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 26 - 202
Target Start/End: Original strand, 956967 - 957139
Alignment:
| Q |
26 |
cctccatcatcacggccacttacctccactacatcagccaccatctccaacttgagaatcttcttcactcatgtttcaaggtattttttcatttattaat |
125 |
Q |
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||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||| ||| || |
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| T |
956967 |
cctccatcatcacggccgcttacctccgctacatcagccaccatctccaacttgaggctcttcttcactcctgtttcaaggtcttttttcgttt----at |
957062 |
T |
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| Q |
126 |
taatgagcttaatttcactacaacttacaaaacgtttgatcagttatatagtatatatcttcatgaaaatggactag |
202 |
Q |
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| |||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
957063 |
tcatgagcttaatttcactacaacttacaaaaaatttgatcagttatctagtttatatcttcatgaaaatggactag |
957139 |
T |
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