View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19520_low_52 (Length: 338)

Name: NF19520_low_52
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19520_low_52
NF19520_low_52
[»] chr5 (4 HSPs)
chr5 (12-243)||(15216553-15216785)
chr5 (96-177)||(8151133-8151215)
chr5 (127-240)||(23418414-23418528)
chr5 (126-242)||(33793081-33793198)
[»] chr4 (6 HSPs)
chr4 (96-242)||(54273444-54273592)
chr4 (103-189)||(10777940-10778027)
chr4 (15-79)||(23805170-23805235)
chr4 (12-79)||(6355197-6355265)
chr4 (115-185)||(35232874-35232945)
chr4 (15-56)||(11694720-11694761)
[»] chr3 (5 HSPs)
chr3 (96-195)||(32072982-32073081)
chr3 (15-57)||(25979640-25979682)
chr3 (18-86)||(21080604-21080673)
chr3 (18-86)||(21085193-21085262)
chr3 (15-78)||(17914474-17914538)
[»] chr6 (4 HSPs)
chr6 (96-197)||(6267418-6267520)
chr6 (96-243)||(15837209-15837356)
chr6 (15-84)||(8754286-8754356)
chr6 (22-56)||(13737665-13737699)
[»] chr2 (6 HSPs)
chr2 (96-165)||(16638427-16638496)
chr2 (16-55)||(39529780-39529819)
chr2 (15-68)||(23479762-23479816)
chr2 (18-86)||(45469533-45469602)
chr2 (18-86)||(45702558-45702627)
chr2 (32-79)||(6695362-6695410)
[»] chr8 (6 HSPs)
chr8 (101-242)||(45366779-45366922)
chr8 (174-242)||(11219469-11219537)
chr8 (12-58)||(9741523-9741569)
chr8 (96-177)||(35687916-35687998)
chr8 (126-197)||(13325747-13325819)
chr8 (15-59)||(14005778-14005822)
[»] chr7 (1 HSPs)
chr7 (99-156)||(20482887-20482945)
[»] chr1 (6 HSPs)
chr1 (12-54)||(14341550-14341592)
chr1 (141-242)||(26344569-26344671)
chr1 (18-86)||(26588736-26588805)
chr1 (96-133)||(33770146-33770183)
chr1 (122-186)||(50311133-50311198)
chr1 (174-243)||(25559532-25559601)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 12 - 243
Target Start/End: Complemental strand, 15216785 - 15216553
Alignment:
Q  12 gagatgatacatgtgggagccttgaagaagaaaagaaaatagactgg-agagaggacatgacaaacttctgaagaaaacatgtcctttctatgagtacta 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||| |||||    
T  15216785 gagatgatacatgtgggagccttgaagaagaaaagaaaatagactgggagagagatcatgacaaacttctgaagaaaacatgtcctttctatgaatacta 15216686  T
Q  111 ggttggtgacctaagtttaattactgtttctcttatgttgtggttttgttgggttgctaacataaaaccgcaaaccgaaccgaaccacatggttgagtnn 210  Q
    ||||||||||||||||||||||| |||||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||||||||||||||      
T  15216685 ggttggtgacctaagtttaattagtgtttctcttatgttgcgattttgtttggctgctaacataaaaccgcaaaccgaaccgaaccacatggttgagtaa 15216586  T
Q  211 nnnnntgatccgaatacatccgaaccaaatgca 243  Q
         ||||||||||||||||||||||||||||    
T  15216585 aaaaatgatccgaatacatccgaaccaaatgca 15216553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 177
Target Start/End: Original strand, 8151133 - 8151215
Alignment:
Q  96 tttctatgagtactaggttgg-tgacctaagtttaattactgtttctcttatgttgtggttttgttgggttgctaacataaaa 177  Q
    ||||||||||||||||||||| ||||  ||||||||||| | |||||||||||||| | ||| ||| | ||||||| ||||||    
T  8151133 tttctatgagtactaggttgggtgacacaagtttaattagtatttctcttatgttgcgatttggttcgattgctaaaataaaa 8151215  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 240
Target Start/End: Original strand, 23418414 - 23418528
Alignment:
Q  127 ttaattactgtttctcttatgttgtggttttgttgggttgctaacataaaa-ccgcaaaccgaaccgaaccacatggttgagtnnnnnnntgatccgaat 225  Q
    ||||||| ||||| |||||||||| ||||| ||| ||| | ||| |||||| || ||||||||||| ||||||  ||||||||       ||||||||||    
T  23418414 ttaattaatgtttttcttatgttgcggtttggttcggtcggtaaaataaaaacctcaaaccgaaccaaaccacgcggttgagtaataaaatgatccgaat 23418513  T
Q  226 acatccgaaccaaat 240  Q
    | |||||||||||||    
T  23418514 atatccgaaccaaat 23418528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 242
Target Start/End: Original strand, 33793081 - 33793198
Alignment:
Q  126 tttaattactgtttctcttatgttgtggttttgttgggttgctaacat-aaaaccgcaaaccgaaccgaaccacatggttgagtnnnnnnntgatccgaa 224  Q
    |||||||| ||||| |||||| |||  |||| ||| ||||| ||| || ||||||||||||| || | ||||||| ||||||||       ||||| |||    
T  33793081 tttaattagtgtttttcttatattgcagtttggtttggttgataaaatcaaaaccgcaaaccaaatcaaaccacacggttgagtaaaaaaatgatctgaa 33793180  T
Q  225 tacatccgaaccaaatgc 242  Q
    ||||||||||||||||||    
T  33793181 tacatccgaaccaaatgc 33793198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 96 - 242
Target Start/End: Complemental strand, 54273592 - 54273444
Alignment:
Q  96 tttctatgagtactaggttggtgacctaagtttaattactgtttctcttatgttgtggttttgttgggttgctaacat-aaaaccgcaaaccgaaccgaa 194  Q
    ||||| ||||||||||| |||||| ||||||||| ||| |||||||||||||||| ||||| ||| ||||||||| || ||||||||||||| |||||||    
T  54273592 tttctctgagtactaggctggtgaactaagtttagttagtgtttctcttatgttgcggtttggttcggttgctaaaataaaaaccgcaaaccaaaccgaa 54273493  T
Q  195 ccacatggttgagt-nnnnnnntgatccgaatacatccgaaccaaatgc 242  Q
     ||   ||||||||        |||||||||||||||||||||||||||    
T  54273492 tcatgcggttgagtaaaaaaaatgatccgaatacatccgaaccaaatgc 54273444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 103 - 189
Target Start/End: Complemental strand, 10778027 - 10777940
Alignment:
Q  103 gagtactaggttggtgacctaagtttaattactgtttctcttatgttgtggttttgttgggttgctaacat-aaaaccgcaaaccgaa 189  Q
    |||||||||||| |||| ||||||||||||| ||||| |||||||||||||||| ||| ||||||||| || |||||||||| |||||    
T  10778027 gagtactaggtttgtgatctaagtttaattagtgtttatcttatgttgtggtttggttcggttgctaaaataaaaaccgcaagccgaa 10777940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 23805235 - 23805170
Alignment:
Q  15 atgatacatgtgggagccttgaagaagaaaagaaaatagactgg-agagaggacatgacaaacttc 79  Q
    ||||||||||||| ||||||||||||| ||||||||||||| || | |||||||| ||||||||||    
T  23805235 atgatacatgtggaagccttgaagaaggaaagaaaatagaccggaaaagaggacaagacaaacttc 23805170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 6355265 - 6355197
Alignment:
Q  12 gagatgatacatgtgggagccttgaagaagaaaagaaaatagactgg-agagaggacatgacaaacttc 79  Q
    |||||||||||||  |||||||||||||| |||||||||||||| || ||||| |||| |||| |||||    
T  6355265 gagatgatacatgcaggagccttgaagaacaaaagaaaatagaccggaagagaagacaagacagacttc 6355197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 35232945 - 35232874
Alignment:
Q  115 ggtgacctaagtttaattactgtttctcttatgttgtggttttgttgggttgctaacat-aaaaccgcaaac 185  Q
    |||||| |||||||||||| ||||| |||||||||| ||||| ||| ||||| ||| || ||||||||||||    
T  35232945 ggtgacataagtttaattagtgtttttcttatgttgcggtttagttcggttgataaaataaaaaccgcaaac 35232874  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 11694720 - 11694761
Alignment:
Q  15 atgatacatgtgggagccttgaagaagaaaagaaaatagact 56  Q
    ||||||||||||||||||||| ||||| ||||||| ||||||    
T  11694720 atgatacatgtgggagccttgtagaaggaaagaaagtagact 11694761  T

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Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 96 - 195
Target Start/End: Complemental strand, 32073081 - 32072982
Alignment:
Q  96 tttctatgagtactaggttggtgacctaagtttaattactgtttctcttatgttgtggttttgttgggttgctaacataaaaccgcaaaccgaaccgaac 195  Q
    ||||||||||||||||||| ||| ||||| |||||||| ||||| |||| ||||| | ||| |||  |||||||| ||||||||||||||||||||||||    
T  32073081 tttctatgagtactaggtttgtgtcctaaatttaattagtgtttttcttgtgttgcgatttggttcagttgctaaaataaaaccgcaaaccgaaccgaac 32072982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 25979640 - 25979682
Alignment:
Q  15 atgatacatgtgggagccttgaagaagaaaagaaaatagactg 57  Q
    |||||||||| | |||||||||||||| |||||||||||||||    
T  25979640 atgatacatgagagagccttgaagaaggaaagaaaatagactg 25979682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 21080673 - 21080604
Alignment:
Q  18 atacatgtgggagccttgaagaagaaaagaaaatagactgg-agagaggacatgacaaacttctgaagaa 86  Q
    |||||||  ||||||||||||||| ||||||||||||| || | |||||||| |||||| ||| ||||||    
T  21080673 atacatgcaggagccttgaagaaggaaagaaaatagaccggtaaagaggacaagacaaaattcggaagaa 21080604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 21085262 - 21085193
Alignment:
Q  18 atacatgtgggagccttgaagaagaaaagaaaatagactgg-agagaggacatgacaaacttctgaagaa 86  Q
    |||||||  ||||||||||||||| ||||||||||||| || | |||||||| |||||| ||| ||||||    
T  21085262 atacatgcaggagccttgaagaaggaaagaaaatagaccggtaaagaggacaagacaaaattcggaagaa 21085193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 17914474 - 17914538
Alignment:
Q  15 atgatacatgtgggagccttgaagaagaaaagaaaatagactgg-agagaggacatgacaaactt 78  Q
    ||||||| || |||||| ||||||||| ||||||||||||| || |||||||||| |||| ||||    
T  17914474 atgatacctgcgggagctttgaagaaggaaagaaaatagaccggaagagaggacaagacagactt 17914538  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 197
Target Start/End: Original strand, 6267418 - 6267520
Alignment:
Q  96 tttctatgagtactaggttggtgacctaagtttaattactgtttctcttatgttgtggttttgttgggttgctaacat-aaaaccgcaaaccgaaccgaa 194  Q
    ||||||||||||||||||| |||||||||||||| ||| |||||||||||||||| ||||| ||| ||||  ||| || ||||||||||||| |||| ||    
T  6267418 tttctatgagtactaggtttgtgacctaagtttagttaatgtttctcttatgttgcggtttggtttggtttttaaaataaaaaccgcaaaccaaaccaaa 6267517  T
Q  195 cca 197  Q
    |||    
T  6267518 cca 6267520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 96 - 243
Target Start/End: Complemental strand, 15837356 - 15837209
Alignment:
Q  96 tttctatgagtactaggttggtgacctaagtttaattactgtttctcttatgttgtggttttgttgggttgctaacat-aaaaccgcaaaccgaaccgaa 194  Q
    ||||||||| |||||||||| |  |||||||||||||| ||||| |||||||||| ||||| ||| ||||||||| || |||||| |||||| |||||||    
T  15837356 tttctatgaatactaggttg-tatcctaagtttaattaatgtttttcttatgttgcggtttggttcggttgctaaaataaaaaccacaaaccaaaccgaa 15837258  T
Q  195 ccacatggttgagtnnnnnnntgatccgaatacatccgaaccaaatgca 243  Q
    |||  ||||| ||        |||||| ||| |||||||||||||||||    
T  15837257 ccatgtggttaaggaaaaatatgatccaaattcatccgaaccaaatgca 15837209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 8754286 - 8754356
Alignment:
Q  15 atgatacatgtgggagccttgaagaagaaaagaaaatagactgg-agagaggacatgacaaacttctgaag 84  Q
    ||||||| || |||||||||||||||  ||||||||||||| || |||||||||| |||| ||||| ||||    
T  8754286 atgatacctgcgggagccttgaagaaagaaagaaaatagaccggaagagaggacaagacagacttcagaag 8754356  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 13737665 - 13737699
Alignment:
Q  22 atgtgggagccttgaagaagaaaagaaaatagact 56  Q
    |||||||||||||||||||| ||||||||||||||    
T  13737665 atgtgggagccttgaagaaggaaagaaaatagact 13737699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 16638427 - 16638496
Alignment:
Q  96 tttctatgagtactaggttggtgacctaagtttaattactgtttctcttatgttgtggttttgttgggtt 165  Q
    |||||| |||||||||||  ||||||||| |||||||| |||||||||||||||| ||||||||| ||||    
T  16638427 tttctaggagtactaggtctgtgacctaaatttaattagtgtttctcttatgttgcggttttgtttggtt 16638496  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 39529780 - 39529819
Alignment:
Q  16 tgatacatgtgggagccttgaagaagaaaagaaaatagac 55  Q
    |||||||||||||||||||||||||| ||||||| |||||    
T  39529780 tgatacatgtgggagccttgaagaaggaaagaaagtagac 39529819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 23479816 - 23479762
Alignment:
Q  15 atgatacatgtgggagccttgaagaagaaaagaaaatagact-ggagagaggaca 68  Q
    ||||||||||  ||||||||||||||| |||||||||||| | ||||||||||||    
T  23479816 atgatacatgcaggagccttgaagaaggaaagaaaatagattgggagagaggaca 23479762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 45469533 - 45469602
Alignment:
Q  18 atacatgtgggagccttgaagaagaaaagaaaatagactgg-agagaggacatgacaaacttctgaagaa 86  Q
    |||| ||| ||||||||||||||| ||||||| || || || ||||||||||||| ||||||| ||||||    
T  45469533 atacctgtaggagccttgaagaaggaaagaaagtaaaccggaagagaggacatgaaaaacttcagaagaa 45469602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 45702558 - 45702627
Alignment:
Q  18 atacatgtgggagccttgaagaagaaaagaaaatagactgg-agagaggacatgacaaacttctgaagaa 86  Q
    |||| ||| ||||||||||||||| ||||||| || || || ||||||||||||||| ||||| ||||||    
T  45702558 atacctgtaggagccttgaagaaggaaagaaagtaaaccggaagagaggacatgacagacttcagaagaa 45702627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 6695410 - 6695362
Alignment:
Q  32 cttgaagaagaaaagaaaatagactgg-agagaggacatgacaaacttc 79  Q
    |||||||||||||| || ||||||||| ||||||||||||||| |||||    
T  6695410 cttgaagaagaaaacaagatagactggtagagaggacatgacacacttc 6695362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 242
Target Start/End: Original strand, 45366779 - 45366922
Alignment:
Q  101 atgagtactaggttggtgacctaag-tttaattactgtttctcttatgttgtggttttgttgggttgctaacat-aaaaccgcaaaccgaaccgaaccac 198  Q
    ||||||| |||| |||||||||||| |||||||| |||||||||||||  | ||||| ||| ||||| ||| || |||| | ||||||||||| ||| |     
T  45366779 atgagtattaggatggtgacctaagttttaattagtgtttctcttatgccgcggtttagtttggttgttaaaataaaaatcacaaaccgaaccaaactat 45366878  T
Q  199 atggttgagtnnnnnnntgatccgaatacatccgaaccaaatgc 242  Q
     | |||||||       ||| |||||||||||||||||||||||    
T  45366879 gttgttgagtaaaaaaatgacccgaatacatccgaaccaaatgc 45366922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 11219469 - 11219537
Alignment:
Q  174 aaaaccgcaaaccgaaccgaaccacatggttgagtnnnnnnntgatccgaatacatccgaaccaaatgc 242  Q
    |||||||||||||||||| |||||  || ||||||       |||||||||||||||||||||||||||    
T  11219469 aaaaccgcaaaccgaaccaaaccatgtgattgagtaaaaaaatgatccgaatacatccgaaccaaatgc 11219537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 9741523 - 9741569
Alignment:
Q  12 gagatgatacatgtgggagccttgaagaagaaaagaaaatagactgg 58  Q
    ||||| ||||||||||| |||||||||||| |||||||||| |||||    
T  9741523 gagattatacatgtgggggccttgaagaaggaaagaaaataaactgg 9741569  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 177
Target Start/End: Complemental strand, 35687998 - 35687916
Alignment:
Q  96 tttctatgagtactaggttggtgacctaagtttaattactgtttctc-ttatgttgtggttttgttgggttgctaacataaaa 177  Q
    |||||||||||||| |||| ||  |||||||||||||| ||||| || |||||||| ||||| ||| |||| |||| ||||||    
T  35687998 tttctatgagtacttggtttgtatcctaagtttaattagtgtttttctttatgttgcggtttggttcggttactaaaataaaa 35687916  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 13325747 - 13325819
Alignment:
Q  126 tttaattactgtttctcttatgttgtggttttgttgggttgctaacat-aaaaccgcaaaccgaaccgaacca 197  Q
    |||||||| ||||| |||||| ||| ||||| ||| ||||| ||| || |||||||||||||||||| |||||    
T  13325747 tttaattattgtttttcttatattgcggtttggtttggttgataaaatcaaaaccgcaaaccgaaccaaacca 13325819  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 14005822 - 14005778
Alignment:
Q  15 atgatacatgtgggagccttgaagaagaaaagaaaatagactgga 59  Q
    ||||||| |||| |||| ||||||||| |||||||||||||||||    
T  14005822 atgatacttgtgagagctttgaagaaggaaagaaaatagactgga 14005778  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 20482945 - 20482887
Alignment:
Q  99 ctatgagtactaggttg-gtgacctaagtttaattactgtttctcttatgttgtggttt 156  Q
    ||||||||||||||||| ||||  |||||||||||| |||||||||||| ||| |||||    
T  20482945 ctatgagtactaggttgagtgatataagtttaattagtgtttctcttatattgcggttt 20482887  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 14341550 - 14341592
Alignment:
Q  12 gagatgatacatgtgggagccttgaagaagaaaagaaaataga 54  Q
    |||||||||||||||||||||||||| ||| ||||||| ||||    
T  14341550 gagatgatacatgtgggagccttgaaaaaggaaagaaagtaga 14341592  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 242
Target Start/End: Complemental strand, 26344671 - 26344569
Alignment:
Q  141 tcttatgttgtggttttgttgggttgctaacat-aaaaccgcaaaccgaaccgaaccacatggttgagtnnnnnnntgatccgaatacatccgaaccaaa 239  Q
    |||||| ||| ||||| ||| ||||| ||| || ||||| |||||||||||| |||||   ||||||||       ||||||||||||||||||||||||    
T  26344671 tcttatattgcggtttggttcggttggtaaaatcaaaactgcaaaccgaaccaaaccatgcggttgagtaaaaaattgatccgaatacatccgaaccaaa 26344572  T
Q  240 tgc 242  Q
    |||    
T  26344571 tgc 26344569  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 26588805 - 26588736
Alignment:
Q  18 atacatgtgggagccttgaagaagaaaagaaaatagact-ggagagaggacatgacaaacttctgaagaa 86  Q
    |||||||  ||||||||||||||||||| ||||||||||   ||||||||||||||  ||||| ||||||    
T  26588805 atacatgcaggagccttgaagaagaaaacaaaatagactaaaagagaggacatgacctacttcagaagaa 26588736  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 33770146 - 33770183
Alignment:
Q  96 tttctatgagtactaggttggtgacctaagtttaatta 133  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  33770146 tttctatgagtactaggtttgtgacctacgtttaatta 33770183  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 50311133 - 50311198
Alignment:
Q  122 taagtttaattactgtttctcttatgttgtggttttgttgggttgctaacat-aaaaccgcaaacc 186  Q
    |||||||||||| ||||||| ||||||||  |||| ||| ||||||||| || |||||||||||||    
T  50311133 taagtttaattagtgtttcttttatgttgcagtttggttcggttgctaaaataaaaaccgcaaacc 50311198  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 243
Target Start/End: Complemental strand, 25559601 - 25559532
Alignment:
Q  174 aaaaccgcaaaccgaaccgaaccacatggttgagtnnnnnnntgatccgaatacatccgaaccaaatgca 243  Q
    |||||| ||||||||||| ||||| | ||||||||       ||||||||||| ||||||||||||||||    
T  25559601 aaaaccacaaaccgaaccaaaccatacggttgagtaaaaaaatgatccgaatatatccgaaccaaatgca 25559532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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