View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_low_54 (Length: 328)
Name: NF19520_low_54
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_low_54 |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 288
Target Start/End: Original strand, 888773 - 889044
Alignment:
| Q |
20 |
ggtgagataaatgcaaataacatgttcttcagattggactcaagttactaccgttataacataagaaaccaaacaaacacttcatctgaaaactgaaaat |
119 |
Q |
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| T |
888773 |
ggtgagataaatgcaaataacatgttcttcagattggactcaagttactaccgttataacataagaaaccaaacaaacacttcatctgaaaactgaaaat |
888872 |
T |
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| Q |
120 |
tcaaaaaccaacagaaatttaatctgtttgcatattactctcactaatcatgcaatgcagagggatattcaattacataacctaatacaataaagagaca |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
888873 |
tcaaaaaccaacagaaatttaatctgtttgcatattactctcactaatcatgcaatgcagagggatattcaattacataacctaatacagtaaaaagaca |
888972 |
T |
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| Q |
220 |
gtgtcattactcattaactacacaattaccggtacc---gagtctttatcattactaaatagattcaaccat |
288 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
888973 |
gtgtcattactcattaactacacaattaccggtacccatgtgtctttatcattactaaatagattcaaccat |
889044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 288
Target Start/End: Complemental strand, 913643 - 913372
Alignment:
| Q |
20 |
ggtgagataaatgcaaataacatgttcttcagattggactcaagttactaccgttataacataagaaaccaaacaaacacttcatctgaaaactgaaaat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
913643 |
ggtgagataaatgcaaataacatgttcttcagattggactcaagttactaccgttataacataagaaaccaaacaaacacttcatctgaaaactgaaaat |
913544 |
T |
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| Q |
120 |
tcaaaaaccaacagaaatttaatctgtttgcatattactctcactaatcatgcaatgcagagggatattcaattacataacctaatacaataaagagaca |
219 |
Q |
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| T |
913543 |
tcaaaaaccaacagaaatttaatctgtttgcatattactctcactaatcatgcaatgcagagggatattcaattacataacctaatacagtaaaaagaca |
913444 |
T |
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| Q |
220 |
gtgtcattactcattaactacacaattaccggtacc---gagtctttatcattactaaatagattcaaccat |
288 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
913443 |
gtgtcattactcattaactacacaattaccggtacccatgtgtctttatcattactaaatagattcaaccat |
913372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 1002487 - 1002403
Alignment:
| Q |
20 |
ggtgagataaatgcaaataacatgttcttcagattggactcaagttactaccgttataacataagaaaccaaacaaacacttcat |
104 |
Q |
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|||||||| || |||||||||||| || ||||||||||| | ||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
1002487 |
ggtgagatgaaagcaaataacatgatcatcagattggacgcgagttactaccgttataatataagaaaccaaacaagcacttcat |
1002403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 257
Target Start/End: Complemental strand, 1002189 - 1002155
Alignment:
| Q |
223 |
tcattactcattaactacacaattaccggtaccga |
257 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
1002189 |
tcattactcattaactacacaattaccggtaccga |
1002155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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