View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_low_55 (Length: 319)
Name: NF19520_low_55
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_low_55 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 308
Target Start/End: Complemental strand, 43070687 - 43070383
Alignment:
| Q |
16 |
catgatttgcagttgagaagcatctcttagaaggagagacttctcaacttgaccaacaagagtaatagattgatacttaattttaaaagcaatggtagtt |
115 |
Q |
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| T |
43070687 |
catgatttgcagttgagaagcatctcttagaaggagagacttctcaacttgaccaacaagagtaatagattgatacttaattttaaaagcaatggtagtt |
43070588 |
T |
|
| Q |
116 |
tagaagaaaataattaatgtgtgctgtaaag-nnnnnnnnncacaatcacatgagttagtgatcatgtc-----------ttnnnnnnnnngcccttatg |
203 |
Q |
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|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||| |
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| T |
43070587 |
tagaagaaaaaaattaatgtgtgctgtaaagaaaaaaaaaacacaatcacatgagttagtgatcatgtcttaaaaaaactttaaaaaaaaagcccttatg |
43070488 |
T |
|
| Q |
204 |
tctctaaaacatgtatctctttgtcttttgtcttgatccgttaatgatttaagactcaagaacaagaattaattaaagcatggatgagtctatcttcacc |
303 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43070487 |
tctctaaaacatgtatctctttgtcttttgtctgcatccgttaatgattaaagactcaagaacaagaattaattaaagcatggatgagtctatcttcacc |
43070388 |
T |
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| Q |
304 |
ccttt |
308 |
Q |
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||||| |
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| T |
43070387 |
ccttt |
43070383 |
T |
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