View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_low_56 (Length: 315)
Name: NF19520_low_56
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 19433324 - 19433028
Alignment:
| Q |
1 |
tgtaccatgctataaaaaaggactgtttgaaaatgcatttaaacaaaatggctctacttagaagattaactttttaatctcaaatgtctaaactgaacca |
100 |
Q |
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| T |
19433324 |
tgtaccatgctataaaaaaggactgtttgaaaatgcatttaaacaaaatggctctacttagaagattaactttttaacctcaaatgtctaaactgaacca |
19433225 |
T |
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| Q |
101 |
atattttaggtggtccatatataaaagacttcattaagtttttaatattatccattgaacattttttgtnnnnnnntaaatcattggattttgaagctct |
200 |
Q |
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| T |
19433224 |
atattttaggtggtccatatataaaagacttcattaagtttttaatattatccattgaacattttttgtaaaaaaataaatcattggattttgaagctct |
19433125 |
T |
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| Q |
201 |
actagatctaataatgcttcattgacatatttttctttcctactcttgcagaacttcataattcaatcgtttattttttatccaaagtgatcgaatg |
297 |
Q |
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| T |
19433124 |
actagatctaataatgcttcattgacatatttttctttcctactgttgcagaacttcataattcaatcgtttattttttatccaaagtgatcgaatg |
19433028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 19387430 - 19387385
Alignment:
| Q |
177 |
taaatcattggattttgaagctctactagatctaataatgcttcat |
222 |
Q |
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| T |
19387430 |
taaatcattggattttgaaggtctgctagatctaataatgcttcat |
19387385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 19387604 - 19387444
Alignment:
| Q |
1 |
tgtaccatgctataaaaaaggactgtttgaaaatgcatttaaacaaaatggctctacttagaagattaactttttaatctcaaatgtctaaactgaacca |
100 |
Q |
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| T |
19387604 |
tgtaccatggtataaaaaaggactatctgatgatgtatttaaacaaaatggctttatttgaaatattaac-tttaaagctcaaatgtctaaggtggatca |
19387506 |
T |
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| Q |
101 |
atattttaggtggtccatatataaaagacttcattaagtttttaatattatccattgaacattttt |
166 |
Q |
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|||||||| || | || | | ||| |||||||| |||||||||||| |||||||| |||||| |
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| T |
19387505 |
atattttaaatgctacacacaaaaa----ttcattaattttttaatattaaccattgaatattttt |
19387444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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