View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_low_57 (Length: 305)
Name: NF19520_low_57
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_low_57 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 1144749 - 1145017
Alignment:
| Q |
18 |
gaaacatgagaatcatcaattcattgatttttcctcatttggttagtgagagaagaatttgattgttcaaatgaactaaatgaagccaaaaccaaagttc |
117 |
Q |
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| T |
1144749 |
gaaacatgagaatcatcaattcattgatttttcctcatttggttagtgagagaagaatttgattgttcaaatgaactaa-tgaagccaaaaccaaagttc |
1144847 |
T |
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| Q |
118 |
caagcaaatttaaaggcaaagttcaaacttttggtttttaaatatgcaaaaaacaaacttcatcaggcaattggaaatagcttacaaccaatcacaacaa |
217 |
Q |
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| T |
1144848 |
caagcaaatttaaaggcaaagttcaaacttttggtttttaaatatgcaaaaaacaaacttcatcaggcaattggaaatagcttacaaccaatcacaacaa |
1144947 |
T |
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| Q |
218 |
taattctgactagttnnnnnnncaactataatcaccaactggtctacgttaaaggctcttgggattctttt |
288 |
Q |
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| T |
1144948 |
taattctgactaatt-aaaaaacaactataatcaccaactggtctacgttaaaggttcttgggattctttt |
1145017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 23 - 232
Target Start/End: Complemental strand, 18280331 - 18280123
Alignment:
| Q |
23 |
atgagaatcatcaattcattgatttttcctcatttggttagtgagagaagaatttgattgttcaaatgaactaaatgaagccaaaaccaaagttccaagc |
122 |
Q |
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| T |
18280331 |
atgaggatcatcaattcattgatttttc-tcagttggtccgttagagaagaatttgattggtataatgaactaaatgaagccaaaaccaaagtttcaagc |
18280233 |
T |
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| Q |
123 |
aaatttaaaggcaaagttcaaacttttggtttttaaatatgcaaaaaacaaacttcatcaggcaattggaaatagcttacaaccaatcacaacaataatt |
222 |
Q |
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| T |
18280232 |
aaatttaaagacaatgttcactcttttggtttttaaatatgcaaaaaccaaacttcatcaggcaattggaaatagcttacaaccaatcacaacaataatt |
18280133 |
T |
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| Q |
223 |
ctgactagtt |
232 |
Q |
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|||| ||||| |
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| T |
18280132 |
ctgattagtt |
18280123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 8296409 - 8296591
Alignment:
| Q |
18 |
gaaacatgagaatcatcaattcattgatttttcctcatttggttagtgagagaagaatttgattgttcaaatgaactaaatgaagccaaaaccaaagttc |
117 |
Q |
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|||||||||| |||| |||||||| ||||||| ||||||||| ||| ||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
8296409 |
gaaacatgaggatcaacaattcatatatttttc-tcatttggtaagttagagaagaatttgattgttataatgaactaaatgaaaccaaaaccaaagttt |
8296507 |
T |
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| Q |
118 |
caagcaaatttaaaggcaaagttcaaacttttggtttttaaatatgcaaaaaacaaacttcatcaggcaattggaaatagctta |
201 |
Q |
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| T |
8296508 |
caagcaaatttaaagacaaagttcactcttttggtttttaaatatgcaaaaaccaaacttcatcaggaaattggaaatagctta |
8296591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 122 - 201
Target Start/End: Original strand, 8300088 - 8300168
Alignment:
| Q |
122 |
caaatttaaaggcaaagttcaaacttttggtttttaaatatgcaaaaaacaaactt-catcaggcaattggaaatagctta |
201 |
Q |
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||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
8300088 |
caaatttaaagacaaagttcactcttttggtttttaaatatgcaaaaaccaaacttccatcaggcaattggaaatagctta |
8300168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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