View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_low_66 (Length: 271)
Name: NF19520_low_66
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_low_66 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 54952170 - 54951913
Alignment:
| Q |
1 |
tctgcaaaatacaaatcatcttcaagttcaacagcaacctccatatctgtgtataatcaatcttgttataggcttaaaaaattatctacttttgcatgaa |
100 |
Q |
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| T |
54952170 |
tctgcaaaatacaaatcatcttcaagttcaacagcaacctccatatttgtgtataatcaatcttgttataggcttaaaaaattatctactttggcatgaa |
54952071 |
T |
|
| Q |
101 |
acaaagtatattcta-tttataattataacatgctaatctcttttctcaaccttgatg-nnnnnnnctctcatgtgttgtcccaaagatatactatatat |
198 |
Q |
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||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
54952070 |
acaaagtatattctagtttatagttataacatgctaatctcttttctcaactttgatgttttttttttctcatgtgttgtcccaaagatatactatatat |
54951971 |
T |
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| Q |
199 |
atagctttgataacaaaaggaagaattattaaggttaacaaaaaaggtgagttgaaat |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54951970 |
atagctttgataacaaaaggaagaattattaaggttaacaaaaaaggtgagttgaaat |
54951913 |
T |
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