View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19520_low_67 (Length: 267)

Name: NF19520_low_67
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19520_low_67
NF19520_low_67
[»] scaffold0291 (2 HSPs)
scaffold0291 (100-182)||(5527-5609)
scaffold0291 (100-180)||(5322-5402)
[»] chr8 (2 HSPs)
chr8 (100-183)||(35050147-35050230)
chr8 (100-183)||(35049554-35049637)
[»] chr5 (2 HSPs)
chr5 (100-179)||(40974608-40974687)
chr5 (100-182)||(40973077-40973159)
[»] chr7 (1 HSPs)
chr7 (100-182)||(21704112-21704193)


Alignment Details
Target: scaffold0291 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 5527 - 5609
Alignment:
Q  100 aataaattaaatgaggtgtaatatttttattggttgtttgtaaataatgacatgttacttacgttcccatctaagaatttctc 182  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||    
T  5527 aataaattaaatgaggtgtaatatttttattggttgtttataaatgatgatatgttacttacgttcccatctaagaatttctc 5609  T

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Target: scaffold0291; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 5402 - 5322
Alignment:
Q  100 aataaattaaatgaggtgtaatatttttattggttgtttgtaaataatgacatgttacttacgttcccatctaagaatttc 180  Q
    |||||||||||||||||||||| |||| |||||||||||||||||  |||||||||||||||||||||||| |||||||||    
T  5402 aataaattaaatgaggtgtaatgttttgattggttgtttgtaaatgctgacatgttacttacgttcccatccaagaatttc 5322  T

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Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 35050147 - 35050230
Alignment:
Q  100 aataaattaaatgaggtgtaatatttttattggttgtttgtaaataatgacatgttacttacgttcccatctaagaatttctcg 183  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  35050147 aataaattaattgaggtgtaatgtttttattggttgtttgtaaatcctgacatgttagttacgttcccatctaagaatttctcg 35050230  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 100 - 183
Target Start/End: Complemental strand, 35049637 - 35049554
Alignment:
Q  100 aataaattaaatgaggtgtaatatttttattggttgtttgtaaataatgacatgttacttacgttcccatctaagaatttctcg 183  Q
    ||||||||||||||||||||| |||||||||  ||||||||||||  |||||||||| ||||||| ||||||||||||||||||    
T  35049637 aataaattaaatgaggtgtaaaatttttatttattgtttgtaaatgctgacatgttagttacgtttccatctaagaatttctcg 35049554  T

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Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 100 - 179
Target Start/End: Original strand, 40974608 - 40974687
Alignment:
Q  100 aataaattaaatgaggtgtaatatttttattggttgtttgtaaataatgacatgttacttacgttcccatctaagaattt 179  Q
    |||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||    
T  40974608 aataaattaaatgaggtgtaatctttttattggttgtttgtaaatgctgacatgttacttacgttcccatccaagaattt 40974687  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 40973159 - 40973077
Alignment:
Q  100 aataaattaaatgaggtgtaatatttttattggttgtttgtaaataatgacatgttacttacgttcccatctaagaatttctc 182  Q
    ||||||||||||||||| |||| ||||||||| | ||||||||||  |||||||||||||||||||| |||||||||||||||    
T  40973159 aataaattaaatgaggtttaatgtttttattgatcgtttgtaaatgctgacatgttacttacgttccaatctaagaatttctc 40973077  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 21704193 - 21704112
Alignment:
Q  100 aataaattaaatgaggtgtaatatttttattggttgtttgtaaataatgacatgttacttacgttcccatctaagaatttctc 182  Q
    |||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  21704193 aataaattaaatgaggtgtaatgtttt-attggttgtttgtaaatactgacatgttacttacattcccatctaagaatttctc 21704112  T

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