View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19520_low_70 (Length: 252)

Name: NF19520_low_70
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19520_low_70
NF19520_low_70
[»] chr4 (5 HSPs)
chr4 (14-252)||(28290025-28290266)
chr4 (102-238)||(28281774-28281910)
chr4 (137-198)||(28302889-28302949)
chr4 (14-55)||(28281950-28281991)
chr4 (14-57)||(28302978-28303021)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 28290266 - 28290025
Alignment:
Q  14 aatactagtatacaaacataatacaccaaacatggtgagggtcatac----tagatcaccatgcacgtagcgaagtacaaacatatcatgacctttaagt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28290266 aatactagtatacaaacataatacaccaaacatggtgagggtcatacatactagatcaccatgcacgtagcgaagtacaaacatatcatgacctttaagt 28290167  T
Q  110 catcaacactcttgattagaagttcacaaaaatgtaaaatatctaacctgtgagaacagcattcagcaagagaacgccctgaaattaaatcaaagctgtg 209  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28290166 caccaacactcttgattagaagttcacaaaaatgtaaaatatctaacctgtgagaacagcattcagcaagagaacgccctgaaatt-aatcaaagctgtg 28290068  T
Q  210 agcaaagaatagtttttgaaaaacaaaatttacgaattaaagt 252  Q
    | || ||||||||||||||||||||||||||||||||||||||    
T  28290067 atcagagaatagtttttgaaaaacaaaatttacgaattaaagt 28290025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 102 - 238
Target Start/End: Complemental strand, 28281910 - 28281774
Alignment:
Q  102 ctttaagtcatcaacactcttgattagaagttcacaaaaatgtaaaatatctaacctgtgagaacagcattcagcaagagaacgccctgaaattaaatca 201  Q
    |||||||||| ||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  28281910 ctttaagtcaccaatactattgattaaaagttcacaaaaatgtaaaatatctaacctgtgagaacagcattcagcaagagaacgccctgaaattaagtta 28281811  T
Q  202 aagctgtgagcaaagaatagtttttgaaaaacaaaat 238  Q
    ||| ||||  || ||||||||||||||||||||||||    
T  28281810 aagttgtggtcagagaatagtttttgaaaaacaaaat 28281774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 28302949 - 28302889
Alignment:
Q  137 aaaaatgtaaaatatctaacctgtgagaacagcattcagcaagagaacgccctgaaattaaa 198  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28302949 aaaaatgtaaa-tatctaacctgtgagaacagcattcagtaagagaacgccctgaaattaaa 28302889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 28281991 - 28281950
Alignment:
Q  14 aatactagtatacaaacataatacaccaaacatggtgagggt 55  Q
    ||||||||||||||||||||||||||||||||| || |||||    
T  28281991 aatactagtatacaaacataatacaccaaacatagtaagggt 28281950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 28303021 - 28302978
Alignment:
Q  14 aatactagtatacaaacataatacaccaaacatggtgagggtca 57  Q
    ||||||||||||||| ||||||||||||||||| || |||||||    
T  28303021 aatactagtatacaagcataatacaccaaacatagtcagggtca 28302978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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