View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19520_low_74 (Length: 242)

Name: NF19520_low_74
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19520_low_74
NF19520_low_74
[»] chr4 (6 HSPs)
chr4 (59-230)||(6116192-6116366)
chr4 (59-227)||(9883198-9883366)
chr4 (60-123)||(24715761-24715824)
chr4 (63-159)||(35150309-35150405)
chr4 (63-121)||(17743813-17743871)
chr4 (61-122)||(12285966-12286027)
[»] chr7 (1 HSPs)
chr7 (59-163)||(6414694-6414798)
[»] chr2 (1 HSPs)
chr2 (63-128)||(24386192-24386257)
[»] chr1 (2 HSPs)
chr1 (65-103)||(12900397-12900435)
chr1 (93-168)||(12893090-12893166)


Alignment Details
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 59 - 230
Target Start/End: Complemental strand, 6116366 - 6116192
Alignment:
Q  59 cttttgaagacttagacgatggtctgaagaaaggtcaacaaaaaataaaagctatgattagaagttgcattcaacattgaaga---ctctgatgaaagca 155  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||   |||||| |||||||||||||||   |||||||||||||     
T  6116366 cttttgaagacttagacgatggtctgaagaaaggtcaacaaaaagtaaaagctatgatccaaagttgtattcaacattgaagaagactctgatgaaagcc 6116267  T
Q  156 agttctgaaggaaacttgttctgatggacatgttagcagtcaacactctgaagagactttgaccaattttgtttt 230  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6116266 agttctgaaggaaacttgttctgatgggcatgttagcagtcaacactctgaagagactttgaccaattttgtttt 6116192  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 227
Target Start/End: Original strand, 9883198 - 9883366
Alignment:
Q  59 cttttgaagacttagacgatggtctgaagaaaggtcaacaaaaaataaaagctatgattagaagttgcattcaacattgaagactctgatgaaagcaagt 158  Q
    ||||||||||||| || |||| ||||||||||| | |||| ||| | | |||| | |||||||| | |||| | | ||||||||||| |||||||||| |    
T  9883198 cttttgaagacttggaagatgatctgaagaaagataaacataaattcagagctctaattagaaggttcatttacccttgaagactctaatgaaagcaaat 9883297  T
Q  159 tctgaaggaaacttgttctgatggacatgttagcagtcaacactctgaagagactttgaccaattttgt 227  Q
    || | ||||||| |||||| ||||||| || | ||||||||||||| |||| ||| |||| | ||||||    
T  9883298 tccgcaggaaacatgttctcatggacacgtcaacagtcaacactctaaagaaactctgactagttttgt 9883366  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 24715761 - 24715824
Alignment:
Q  60 ttttgaagacttagacgatggtctgaagaaaggtcaacaaaaaataaaagctatgattagaagt 123  Q
    ||||||||||||||| ||||||||||||||||||||| ||||| |||||||| |||||||||||    
T  24715761 ttttgaagacttagaagatggtctgaagaaaggtcaataaaaagtaaaagctttgattagaagt 24715824  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 63 - 159
Target Start/End: Original strand, 35150309 - 35150405
Alignment:
Q  63 tgaagacttagacgatggtctgaagaaaggtcaacaaaaaataaaagctatgattagaagttgcattcaacattgaagactctgatgaaagcaagtt 159  Q
    |||||||||||| |||| | |||||||||||||||||||||| |||| | |||||||||| |||||  ||| |||||||| ||||||| | ||||||    
T  35150309 tgaagacttagaagatgatatgaagaaaggtcaacaaaaaattaaagttctgattagaagatgcatcaaactttgaagaccctgatgagatcaagtt 35150405  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 17743871 - 17743813
Alignment:
Q  63 tgaagacttagacgatggtctgaagaaaggtcaacaaaaaataaaagctatgattagaa 121  Q
    |||||||||||  |||| |||||||||||||||||||||| | |||||| |||| ||||    
T  17743871 tgaagacttagcagatgatctgaagaaaggtcaacaaaaagtcaaagctctgatcagaa 17743813  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 12285966 - 12286027
Alignment:
Q  61 tttgaagacttagacgatggtctgaagaaaggtcaacaaaaaataaaagctatgattagaag 122  Q
    |||||||||||||| |||| | |||||||||||||| ||||| | |||| ||| ||||||||    
T  12285966 tttgaagacttagaagatgatatgaagaaaggtcaataaaaagtcaaagttattattagaag 12286027  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 163
Target Start/End: Complemental strand, 6414798 - 6414694
Alignment:
Q  59 cttttgaagacttagacgatggtctgaagaaaggtcaacaaaaaataaaagctatgattagaagttgcattcaacattgaagactctgatgaaagcaagt 158  Q
    |||||||||||||| | |||  | ||||| |||||||||||||||| ||||||||||| |||||||||||  |   || ||||||||||||| | |||||    
T  6414798 cttttgaagacttacaagattatatgaagtaaggtcaacaaaaaatcaaagctatgatcagaagttgcatcaagtcttaaagactctgatgagatcaagt 6414699  T
Q  159 tctga 163  Q
    |||||    
T  6414698 tctga 6414694  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 24386257 - 24386192
Alignment:
Q  63 tgaagacttagacgatggtctgaagaaaggtcaacaaaaaataaaagctatgattagaagttgcat 128  Q
    ||||||||||||| ||| ||| ||| |||||||||||||| ||||||||||||| |||| ||||||    
T  24386257 tgaagacttagaccatgatctaaaggaaggtcaacaaaaattaaaagctatgatcagaatttgcat 24386192  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 103
Target Start/End: Original strand, 12900397 - 12900435
Alignment:
Q  65 aagacttagacgatggtctgaagaaaggtcaacaaaaaa 103  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  12900397 aagacttagaagatgatctgaagaaaggtcaacaaaaaa 12900435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 12893090 - 12893166
Alignment:
Q  93 tcaacaaaaaa-taaaagctatgattagaagttgcattcaacattgaagactctgatgaaagcaagttctgaaggaa 168  Q
    ||||||||||| |||||||| | |||||||| || ||| |   |||||||||||||||||| |||||||||| ||||    
T  12893090 tcaacaaaaaagtaaaagctcttattagaagatgtattaagttttgaagactctgatgaaaacaagttctgatggaa 12893166  T

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