View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_low_76 (Length: 239)
Name: NF19520_low_76
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_low_76 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 35220751 - 35220965
Alignment:
| Q |
4 |
aggctcgcacatcggtaacgttattccacacattgttgttgcgttgcttccaaatactccaaaggatacaagcaaacagcgatgcatctccacttgaaaa |
103 |
Q |
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||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35220751 |
aggctcgcacatctttaacgttattccacac---gttgttgcgttgcttccaaatactccaaaggatacaagcaaacagcgatgcatctccacttgaaaa |
35220847 |
T |
|
| Q |
104 |
gtcctgcaaaatgcgaaaaatacaagctttgtagtccacctcttcacttgcaacagacatgacagcagtggatatagtagacaaattccatacattgatg |
203 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35220848 |
gtcctgcaaaatgcgaaaaatacaagctttgcagtccacctcttcacttgcaacagacatgacagcagtggatatagcagacaaattccatacattgatg |
35220947 |
T |
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| Q |
204 |
ctatttggacaggaaaat |
221 |
Q |
| |
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|||||||||||||||||| |
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| T |
35220948 |
ctatttggacaggaaaat |
35220965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 5562223 - 5562430
Alignment:
| Q |
13 |
catcggtaacgttattccacacattgttgttgcgttgcttccaaatactccaaaggatacaagcaaacagcgatgcatctccacttgaaaagtcctgcaa |
112 |
Q |
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|||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
5562223 |
catctgtaacattatttcacaccttgttgttgcgttgcttccaaatactccaaagaatacaagcaaacaatgatgcatctccacttgacaagtcctgcaa |
5562322 |
T |
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| Q |
113 |
aatgcgaaaaatacaagctttgtagtccacctcttcacttgcaacagacatgacagcagtggatatagtagacaaattccatacattgatgctatttgga |
212 |
Q |
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||| |||||||||||||| || |||| | ||||||||||| ||||| ||||| ||||||||| || ||||||||||||||||||| ||||||||||| |
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| T |
5562323 |
aattcgaaaaatacaagccatgcagtctatctcttcacttgtaacagcattgacaacagtggatacagcagacaaattccatacattgctgctatttgga |
5562422 |
T |
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| Q |
213 |
caggaaaa |
220 |
Q |
| |
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|| ||||| |
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| T |
5562423 |
caagaaaa |
5562430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 43640043 - 43640002
Alignment:
| Q |
26 |
attccacacattgttgttgcgttgcttccaaatactccaaag |
67 |
Q |
| |
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|||||| || |||||||| ||||||||||||||||||||||| |
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| T |
43640043 |
attccagaccttgttgttccgttgcttccaaatactccaaag |
43640002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 1939578 - 1939538
Alignment:
| Q |
39 |
ttgttgcgttgcttccaaatactccaaaggatacaagcaaa |
79 |
Q |
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|||||||||||||||||||||||||| | ||||||||||| |
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| T |
1939578 |
ttgttgcgttgcttccaaatactccacaaaatacaagcaaa |
1939538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 29991867 - 29991660
Alignment:
| Q |
13 |
catcggtaacgttattccacacattgttgttgcgttgcttccaaatactccaaaggatacaagcaaacagcgatgcatctccacttgaaaagtcctgcaa |
112 |
Q |
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|||| ||||||||||| ||||| |||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||| |||||| ||||||||||| |
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| T |
29991867 |
catctgtaacgttatttcacaccttgttgttgcgttgcttcaaaatactccaaagaatacaagcaaacagtgatgcatctatacttgacaagtcctgcaa |
29991768 |
T |
|
| Q |
113 |
aatgcgaaaaatacaagctttgtagtccacctcttcacttgcaacagacatgacagcagtggatatagtagacaaattccatacattgatgctatttgga |
212 |
Q |
| |
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||| |||||||||||||| ||| |||| | ||||||||||| ||||| ||||||||||||||| | ||||||||||||||||||| ||||||||||| |
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| T |
29991767 |
aattcgaaaaatacaagccttgcagtctatctcttcacttgtaacagcactgacagcagtggatacaatagacaaattccatacattactgctatttgga |
29991668 |
T |
|
| Q |
213 |
caggaaaa |
220 |
Q |
| |
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|| ||||| |
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|
| T |
29991667 |
caagaaaa |
29991660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 26510618 - 26510659
Alignment:
| Q |
26 |
attccacacattgttgttgcgttgcttccaaatactccaaag |
67 |
Q |
| |
|
|||||| || |||||||| ||||||||||||||||||||||| |
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| T |
26510618 |
attccagaccttgttgtttcgttgcttccaaatactccaaag |
26510659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 26381873 - 26381914
Alignment:
| Q |
26 |
attccacacattgttgttgcgttgcttccaaatactccaaag |
67 |
Q |
| |
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|||||| || |||||||| ||||||||||||||||||||||| |
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| T |
26381873 |
attccagaccttgttgttccgttgcttccaaatactccaaag |
26381914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 5634581 - 5634540
Alignment:
| Q |
26 |
attccacacattgttgttgcgttgcttccaaatactccaaag |
67 |
Q |
| |
|
|||||| || |||||||| ||||||||||||||||||||||| |
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| T |
5634581 |
attccagaccttgttgttccgttgcttccaaatactccaaag |
5634540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 5212647 - 5212606
Alignment:
| Q |
26 |
attccacacattgttgttgcgttgcttccaaatactccaaag |
67 |
Q |
| |
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|||||| || |||||||| ||||||||||||||||||||||| |
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| T |
5212647 |
attccagaccttgttgtttcgttgcttccaaatactccaaag |
5212606 |
T |
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