View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_low_8 (Length: 735)
Name: NF19520_low_8
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 255 - 649
Target Start/End: Complemental strand, 37446008 - 37445614
Alignment:
| Q |
255 |
tgtctaccttttcatgtgtgatcaaatagagagtctaaattgtgttgatataactgcatttggtataattttttgtacataacacctcccatgattgtgt |
354 |
Q |
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| T |
37446008 |
tgtctaccttttcatgtgtgaccaaatagagagtctaaattatgttgatataactgcatttggtataattttttgtacataacacctcccatgattgtgt |
37445909 |
T |
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| Q |
355 |
tggtataactgctgttgaaatatgatctctaggtaagtttatgtcatttataagttttcttgtatgcatgtgagagttggtgtgtatgaatatccaatgc |
454 |
Q |
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| T |
37445908 |
tggtataactgctgttgaaatatgatctctaggtaagtttatgtcatttataagttttcttgtatgcatgtgagagttggtgtttatgaatatccaatgc |
37445809 |
T |
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| Q |
455 |
taaatattcgatgtcatatagcaccttttgcttgcggaacacacaaagaatctcttaatacggttcactctactcgctccttaaacaattcttttaaaac |
554 |
Q |
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| T |
37445808 |
taaatatttaatgtcatatagcaccttttgcttgcggagcacgcaaagaatctcttaatacgattcactctactcgctccttaaacaattcttttaaaac |
37445709 |
T |
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| Q |
555 |
tcacacagtaatttgcatttaagatagagtgatgtggtgtctttgtcctcttccctattttctctcaaactaaggatctatctagccatagattt |
649 |
Q |
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| T |
37445708 |
tcacacagtaatttgcatttaagatagagtgatgtggtgtctttgtcctcttccctattttctctcaaactaaggatctatctagccatagattt |
37445614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 37446251 - 37446070
Alignment:
| Q |
18 |
ctatcttcgtgacaatttttctctttttcaatagggagacccgcacattagagagagtgtgtgcgcctctataaggagttatctc-------aggcgatt |
110 |
Q |
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| T |
37446251 |
ctatcttcgtgacaatttttctctttttcaatagggagacccgcacattagagag--tgtgtgcgcctctataaggagttatctctttttataggcgatc |
37446154 |
T |
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| Q |
111 |
tatttttcttcataatcaaatggaggtgtgaaccaactcttggatgaacgtaagaatttagactatttatttgatcacacacat |
194 |
Q |
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| T |
37446153 |
tatttttcttcataatcaaatggaggtgtgaaccaactcttggatgaacgcaagaatttagaccatttatttgatcacacacat |
37446070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 634 - 728
Target Start/End: Complemental strand, 37445601 - 37445507
Alignment:
| Q |
634 |
atctagccatagatttgtcacaactaaagtattgttgatggcataagttcggtagttaatgcatttttacatataactcccacccacctatgcta |
728 |
Q |
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| T |
37445601 |
atctagccatagatttgtcacaactaaagtattgttgatggcataagttcggtagttaatgcatttttacatataactcccacccacctatgcta |
37445507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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