View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19520_low_80 (Length: 207)
Name: NF19520_low_80
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19520_low_80 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 3e-99; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 52699553 - 52699367
Alignment:
| Q |
1 |
tgatttgaattcttcgacttgtgtcactgtgcatacactccatctgttactaactgtgtctttttctgttataactgctgctttgtcaaaaaacctgcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52699553 |
tgatttgaattcttcgacttgtgtcactgtgcatacactccatctgttgctaactgtgtctttttctgttataactgctgctttgtcaaaaaacctgcaa |
52699454 |
T |
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| Q |
101 |
aattaatttgctccaatcttatagacccaaataaaactaagactaaattacacttctggttatattaaggtttgacttcgttcccta |
187 |
Q |
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| T |
52699453 |
aattaatttgctccaatcttatagacccaaataaaactaagactaaattacacttctggttatattaaggtttgacttcgttcccta |
52699367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 52722849 - 52722728
Alignment:
| Q |
1 |
tgatttgaattcttcgacttgtgtcactgtgcatacactccatctgttactaactgtgtctttttctgttataactgctgctttgtcaaaaaacctgcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52722849 |
tgatttgaattcttcgacttgtgtcactgtgcatacactccatctgttgctaactgtgtctttttctgttataactgctgctttgtcaaaaaacctgcaa |
52722750 |
T |
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| Q |
101 |
aattaatttgctccaatcttat |
122 |
Q |
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|||||||||||||||||||||| |
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| T |
52722749 |
aattaatttgctccaatcttat |
52722728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 52713827 - 52713706
Alignment:
| Q |
1 |
tgatttgaattcttcgacttgtgtcactgtgcatacactccatctgttactaactgtgtctttttctgttataactgctgctttgtcaaaaaacctgcaa |
100 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||||||||| || | |||||| |||||||| ||||||||||||||||||||||| |||||| |
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| T |
52713827 |
tgatttgaactcttccacttgtgtcactgtgcatacactccatctgttgctgagtgtgtccttttctgtaataactgctgctttgtcaaaaaatctgcaa |
52713728 |
T |
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| Q |
101 |
aattaatttgctccaatcttat |
122 |
Q |
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|||||||||||||| ||||||| |
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| T |
52713727 |
aattaatttgctccgatcttat |
52713706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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